data_5YIV # _entry.id 5YIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YIV pdb_00005yiv 10.2210/pdb5yiv/pdb WWPDB D_1300005309 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YIV _pdbx_database_status.recvd_initial_deposition_date 2017-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, X.' 1 ? 'Zhang, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 3245 _citation.page_last 3256 _citation.title 'Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky161 _citation.pdbx_database_id_PubMed 29514271 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, X.' 1 ? primary 'Haakonsen, D.L.' 2 ? primary 'Sanderlin, A.G.' 3 ? primary 'Liu, Y.J.' 4 ? primary 'Shen, L.' 5 ? primary 'Zhuang, N.' 6 ? primary 'Laub, M.T.' 7 ? primary 'Zhang, Y.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YIV _cell.details ? _cell.formula_units_Z ? _cell.length_a 124.017 _cell.length_a_esd ? _cell.length_b 131.704 _cell.length_b_esd ? _cell.length_c 77.664 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YIV _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell cycle regulatory protein GcrA' 5317.199 4 ? ? 'DNA-binding domain (DBD)' ? 2 polymer syn ;DNA (5'-D(*CP*CP*TP*GP*(6MA)P*TP*TP*CP*G)-3') ; 2720.811 4 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*CP*GP*(6MA)P*AP*TP*CP*AP*G)-3') ; 2738.839 4 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL A,B,C,D ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DT)(DG)(6MA)(DT)(DT)(DC)(DG)' CCTGATTCG E,G,I,K ? 3 polydeoxyribonucleotide no yes '(DC)(DC)(DG)(6MA)(DA)(DT)(DC)(DA)(DG)' CCGAATCAG F,H,J,L ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 MET n 1 6 SER n 1 7 TRP n 1 8 THR n 1 9 ASP n 1 10 GLU n 1 11 ARG n 1 12 VAL n 1 13 SER n 1 14 THR n 1 15 LEU n 1 16 LYS n 1 17 LYS n 1 18 LEU n 1 19 TRP n 1 20 LEU n 1 21 ASP n 1 22 GLY n 1 23 LEU n 1 24 SER n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 ILE n 1 29 ALA n 1 30 LYS n 1 31 GLN n 1 32 LEU n 1 33 GLY n 1 34 GLY n 1 35 VAL n 1 36 THR n 1 37 ARG n 1 38 ASN n 1 39 ALA n 1 40 VAL n 1 41 ILE n 1 42 GLY n 1 43 LYS n 1 44 VAL n 1 45 HIS n 1 46 ARG n 1 47 LEU n 1 48 GLY n 1 49 LEU n 2 1 DC n 2 2 DC n 2 3 DT n 2 4 DG n 2 5 6MA n 2 6 DT n 2 7 DT n 2 8 DC n 2 9 DG n 3 1 DC n 3 2 DC n 3 3 DG n 3 4 6MA n 3 5 DA n 3 6 DT n 3 7 DC n 3 8 DA n 3 9 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 49 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gcrA, CCNA_02328' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NA1000 / CB15N' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus (strain NA1000 / CB15N)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 565050 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 9 'synthetic construct' ? 32630 ? 3 1 sample 1 9 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A0H3C9J4_CAUCN A0A0H3C9J4 ? 1 MSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL 1 2 PDB 5YIV 5YIV ? 2 ? 1 3 PDB 5YIV 5YIV ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YIV A 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 2 1 5YIV B 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 3 1 5YIV C 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 4 1 5YIV D 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 5 2 5YIV E 1 ? 9 ? 5YIV 1 ? 9 ? 1 9 6 3 5YIV F 1 ? 9 ? 5YIV -10 ? -2 ? -10 -2 7 2 5YIV G 1 ? 9 ? 5YIV 1 ? 9 ? 1 9 8 3 5YIV H 1 ? 9 ? 5YIV -10 ? -2 ? -10 -2 9 2 5YIV I 1 ? 9 ? 5YIV 1 ? 9 ? 1 9 10 3 5YIV J 1 ? 9 ? 5YIV -10 ? -2 ? -10 -2 11 2 5YIV K 1 ? 9 ? 5YIV 1 ? 9 ? 1 9 12 3 5YIV L 1 ? 9 ? 5YIV -10 ? -2 ? -10 -2 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YIV GLY A 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 1 1 5YIV ALA A 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 2 1 5YIV MET A 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 3 1 5YIV ASP A 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 4 2 5YIV GLY B 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 5 2 5YIV ALA B 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 6 2 5YIV MET B 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 7 2 5YIV ASP B 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 8 3 5YIV GLY C 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 9 3 5YIV ALA C 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 10 3 5YIV MET C 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 11 3 5YIV ASP C 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 12 4 5YIV GLY D 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 13 4 5YIV ALA D 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 14 4 5YIV MET D 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 15 4 5YIV ASP D 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6MA 'DNA linking' n "N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O6 P' 345.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YIV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 66.56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG 8000, 0.1M Sodium cacodylate, pH 6.5, 0.2M Ammonium surface' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-05-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 59.55 _reflns.entry_id 5YIV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.9 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13413 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.3 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.8 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.11 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.86 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.12 _reflns.pdbx_Rpim_I_all 0.05 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.95 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1010 _reflns_shell.percent_possible_all 92.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.71 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.50 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 49.47 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YIV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.914 _refine.ls_d_res_low 39.030 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11348 _refine.ls_number_reflns_R_free 603 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 79.61 _refine.ls_percent_reflns_R_free 5.31 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2028 _refine.ls_R_factor_R_free 0.2421 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2006 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5YIU _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.41 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.39 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1374 _refine_hist.pdbx_number_atoms_nucleic_acid 1416 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2792 _refine_hist.d_res_high 2.914 _refine_hist.d_res_low 39.030 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? 2984 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.728 ? 4308 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 26.578 ? 1144 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.030 ? 493 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.002 ? 296 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.9139 3.2070 . . 102 1671 51.00 . . . 0.3665 . 0.2963 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2070 3.6708 . . 137 2684 80.00 . . . 0.2797 . 0.2261 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6708 4.6236 . . 184 3188 95.00 . . . 0.2456 . 0.2096 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.6236 39.0330 . . 180 3202 92.00 . . . 0.2049 . 0.1677 . . . . . . . . . . # _struct.entry_id 5YIV _struct.title 'Caulobacter crescentus GcrA DNA-binding domain(DBD) in complex with methylated dsDNA(crystal form 1)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YIV _struct_keywords.text 'Caulobacter crescentus, GcrA, DNA-binding domain, transcription factor, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 2 ? J N N 3 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 8 ? GLY A 22 ? THR A 4 GLY A 18 1 ? 15 HELX_P HELX_P2 AA2 SER A 24 ? GLY A 33 ? SER A 20 GLY A 29 1 ? 10 HELX_P HELX_P3 AA3 THR A 36 ? GLY A 48 ? THR A 32 GLY A 44 1 ? 13 HELX_P HELX_P4 AA4 THR B 8 ? GLY B 22 ? THR B 4 GLY B 18 1 ? 15 HELX_P HELX_P5 AA5 SER B 24 ? GLY B 33 ? SER B 20 GLY B 29 1 ? 10 HELX_P HELX_P6 AA6 THR B 36 ? LEU B 47 ? THR B 32 LEU B 43 1 ? 12 HELX_P HELX_P7 AA7 THR C 8 ? GLY C 22 ? THR C 4 GLY C 18 1 ? 15 HELX_P HELX_P8 AA8 SER C 24 ? LEU C 32 ? SER C 20 LEU C 28 1 ? 9 HELX_P HELX_P9 AA9 THR C 36 ? LEU C 47 ? THR C 32 LEU C 43 1 ? 12 HELX_P HELX_P10 AB1 THR D 8 ? ASP D 21 ? THR D 4 ASP D 17 1 ? 14 HELX_P HELX_P11 AB2 SER D 24 ? LEU D 32 ? SER D 20 LEU D 28 1 ? 9 HELX_P HELX_P12 AB3 THR D 36 ? GLY D 48 ? THR D 32 GLY D 44 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? F DG 3 "O3'" ? ? ? 1_555 F 6MA 4 P ? ? F DG -8 F 6MA -7 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? F 6MA 4 "O3'" ? ? ? 1_555 F DA 5 P ? ? F 6MA -7 F DA -6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? E DG 4 "O3'" ? ? ? 1_555 E 6MA 5 P ? ? E DG 4 E 6MA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? E 6MA 5 "O3'" ? ? ? 1_555 E DT 6 P ? ? E 6MA 5 E DT 6 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale5 covale both ? H DG 3 "O3'" ? ? ? 1_555 H 6MA 4 P ? ? H DG -8 H 6MA -7 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale6 covale both ? H 6MA 4 "O3'" ? ? ? 1_555 H DA 5 P ? ? H 6MA -7 H DA -6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale7 covale both ? G DG 4 "O3'" ? ? ? 1_555 G 6MA 5 P ? ? G DG 4 G 6MA 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale8 covale both ? G 6MA 5 "O3'" ? ? ? 1_555 G DT 6 P ? ? G 6MA 5 G DT 6 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale9 covale both ? J DG 3 "O3'" ? ? ? 1_555 J 6MA 4 P ? ? J DG -8 J 6MA -7 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale10 covale both ? J 6MA 4 "O3'" ? ? ? 1_555 J DA 5 P ? ? J 6MA -7 J DA -6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale11 covale both ? I DG 4 "O3'" ? ? ? 1_555 I 6MA 5 P ? ? I DG 4 I 6MA 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale12 covale both ? I 6MA 5 "O3'" ? ? ? 1_555 I DT 6 P ? ? I 6MA 5 I DT 6 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale13 covale both ? L DG 3 "O3'" ? ? ? 1_555 L 6MA 4 P ? ? L DG -8 L 6MA -7 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale14 covale both ? L 6MA 4 "O3'" ? ? ? 1_555 L DA 5 P ? ? L 6MA -7 L DA -6 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale15 covale both ? K DG 4 "O3'" ? ? ? 1_555 K 6MA 5 P ? ? K DG 4 K 6MA 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale16 covale both ? K 6MA 5 "O3'" ? ? ? 1_555 K DT 6 P ? ? K 6MA 5 K DT 6 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? E DT 3 N3 ? ? ? 1_555 F DA 8 N1 ? ? E DT 3 F DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? E DT 3 O4 ? ? ? 1_555 F DA 8 N6 ? ? E DT 3 F DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? E DG 4 N1 ? ? ? 1_555 F DC 7 N3 ? ? E DG 4 F DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? E DG 4 N2 ? ? ? 1_555 F DC 7 O2 ? ? E DG 4 F DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? E DG 4 O6 ? ? ? 1_555 F DC 7 N4 ? ? E DG 4 F DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? E 6MA 5 N1 ? ? ? 1_555 F DT 6 N3 ? ? E 6MA 5 F DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? E 6MA 5 N6 ? ? ? 1_555 F DT 6 O4 ? ? E 6MA 5 F DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? E DT 6 N3 ? ? ? 1_555 F DA 5 N1 ? ? E DT 6 F DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? E DT 6 O4 ? ? ? 1_555 F DA 5 N6 ? ? E DT 6 F DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F 6MA 4 N1 ? ? E DT 7 F 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F 6MA 4 N6 ? ? E DT 7 F 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? E DC 8 N3 ? ? ? 1_555 F DG 3 N1 ? ? E DC 8 F DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? E DC 8 N4 ? ? ? 1_555 F DG 3 O6 ? ? E DC 8 F DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? E DC 8 O2 ? ? ? 1_555 F DG 3 N2 ? ? E DC 8 F DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? E DG 9 N1 ? ? ? 1_555 F DC 2 N3 ? ? E DG 9 F DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? E DG 9 N2 ? ? ? 1_555 F DC 2 O2 ? ? E DG 9 F DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? E DG 9 O6 ? ? ? 1_555 F DC 2 N4 ? ? E DG 9 F DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? E DG 9 O6 ? ? ? 1_555 H DC 1 N4 ? ? E DG 9 H DC -10 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog19 hydrog ? ? F DC 1 N4 ? ? ? 1_555 G DG 9 O6 ? ? F DC -10 G DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog20 hydrog ? ? G DC 2 N4 ? ? ? 1_555 H DG 9 O6 ? ? G DC 2 H DG -2 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog21 hydrog ? ? G DT 3 N3 ? ? ? 1_555 H DA 8 N1 ? ? G DT 3 H DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? G DT 3 O4 ? ? ? 1_555 H DA 8 N6 ? ? G DT 3 H DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? G DG 4 N1 ? ? ? 1_555 H DC 7 N3 ? ? G DG 4 H DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? G DG 4 N2 ? ? ? 1_555 H DC 7 O2 ? ? G DG 4 H DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? G DG 4 O6 ? ? ? 1_555 H DC 7 N4 ? ? G DG 4 H DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? G 6MA 5 N1 ? ? ? 1_555 H DT 6 N3 ? ? G 6MA 5 H DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? G 6MA 5 N6 ? ? ? 1_555 H DT 6 O4 ? ? G 6MA 5 H DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? G DT 6 N3 ? ? ? 1_555 H DA 5 N1 ? ? G DT 6 H DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? G DT 6 O4 ? ? ? 1_555 H DA 5 N6 ? ? G DT 6 H DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? G DT 7 N3 ? ? ? 1_555 H 6MA 4 N1 ? ? G DT 7 H 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? G DT 7 O4 ? ? ? 1_555 H 6MA 4 N6 ? ? G DT 7 H 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? G DC 8 N3 ? ? ? 1_555 H DG 3 N1 ? ? G DC 8 H DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? G DC 8 N4 ? ? ? 1_555 H DG 3 O6 ? ? G DC 8 H DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? G DC 8 O2 ? ? ? 1_555 H DG 3 N2 ? ? G DC 8 H DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? G DG 9 N1 ? ? ? 1_555 H DC 2 N3 ? ? G DG 9 H DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? G DG 9 N2 ? ? ? 1_555 H DC 2 O2 ? ? G DG 9 H DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? G DG 9 O6 ? ? ? 1_555 H DC 2 N4 ? ? G DG 9 H DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? I DT 3 N3 ? ? ? 1_555 J DA 8 N1 ? ? I DT 3 J DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? I DT 3 O4 ? ? ? 1_555 J DA 8 N6 ? ? I DT 3 J DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? I DG 4 N1 ? ? ? 1_555 J DC 7 N3 ? ? I DG 4 J DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? I DG 4 N2 ? ? ? 1_555 J DC 7 O2 ? ? I DG 4 J DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? I DG 4 O6 ? ? ? 1_555 J DC 7 N4 ? ? I DG 4 J DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? I 6MA 5 N1 ? ? ? 1_555 J DT 6 N3 ? ? I 6MA 5 J DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? I 6MA 5 N6 ? ? ? 1_555 J DT 6 O4 ? ? I 6MA 5 J DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? I DT 6 N3 ? ? ? 1_555 J DA 5 N1 ? ? I DT 6 J DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? I DT 6 O4 ? ? ? 1_555 J DA 5 N6 ? ? I DT 6 J DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? I DT 7 N3 ? ? ? 1_555 J 6MA 4 N1 ? ? I DT 7 J 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? I DT 7 O4 ? ? ? 1_555 J 6MA 4 N6 ? ? I DT 7 J 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? I DC 8 N3 ? ? ? 1_555 J DG 3 N1 ? ? I DC 8 J DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? I DC 8 N4 ? ? ? 1_555 J DG 3 O6 ? ? I DC 8 J DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? I DC 8 O2 ? ? ? 1_555 J DG 3 N2 ? ? I DC 8 J DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? I DG 9 N1 ? ? ? 1_555 J DC 2 N3 ? ? I DG 9 J DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? I DG 9 N2 ? ? ? 1_555 J DC 2 O2 ? ? I DG 9 J DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? I DG 9 O6 ? ? ? 1_555 J DC 2 N4 ? ? I DG 9 J DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? I DG 9 O6 ? ? ? 1_555 L DC 1 N4 ? ? I DG 9 L DC -10 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog56 hydrog ? ? J DC 1 N4 ? ? ? 1_555 K DG 9 O6 ? ? J DC -10 K DG 9 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog57 hydrog ? ? K DC 2 N3 ? ? ? 1_555 L DG 9 N1 ? ? K DC 2 L DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? K DC 2 N4 ? ? ? 1_555 L DG 9 O6 ? ? K DC 2 L DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? K DC 2 O2 ? ? ? 1_555 L DG 9 N2 ? ? K DC 2 L DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? K DT 3 N3 ? ? ? 1_555 L DA 8 N1 ? ? K DT 3 L DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? K DT 3 O4 ? ? ? 1_555 L DA 8 N6 ? ? K DT 3 L DA -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? K DG 4 N1 ? ? ? 1_555 L DC 7 N3 ? ? K DG 4 L DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? K DG 4 N2 ? ? ? 1_555 L DC 7 O2 ? ? K DG 4 L DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? K DG 4 O6 ? ? ? 1_555 L DC 7 N4 ? ? K DG 4 L DC -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? K 6MA 5 N1 ? ? ? 1_555 L DT 6 N3 ? ? K 6MA 5 L DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? K 6MA 5 N6 ? ? ? 1_555 L DT 6 O4 ? ? K 6MA 5 L DT -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? K DT 6 N3 ? ? ? 1_555 L DA 5 N1 ? ? K DT 6 L DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? K DT 6 O4 ? ? ? 1_555 L DA 5 N6 ? ? K DT 6 L DA -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? K DT 7 N3 ? ? ? 1_555 L 6MA 4 N1 ? ? K DT 7 L 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? K DT 7 O4 ? ? ? 1_555 L 6MA 4 N6 ? ? K DT 7 L 6MA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? K DC 8 N3 ? ? ? 1_555 L DG 3 N1 ? ? K DC 8 L DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? K DC 8 N4 ? ? ? 1_555 L DG 3 O6 ? ? K DC 8 L DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? K DC 8 O2 ? ? ? 1_555 L DG 3 N2 ? ? K DC 8 L DG -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? K DG 9 N1 ? ? ? 1_555 L DC 2 N3 ? ? K DG 9 L DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? K DG 9 N2 ? ? ? 1_555 L DC 2 O2 ? ? K DG 9 L DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? K DG 9 O6 ? ? ? 1_555 L DC 2 N4 ? ? K DG 9 L DC -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 5YIV _atom_sites.fract_transf_matrix[1][1] 0.008063 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012876 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 ALA 2 -2 ? ? ? A . n A 1 3 MET 3 -1 ? ? ? A . n A 1 4 ASP 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 SER 6 2 2 SER SER A . n A 1 7 TRP 7 3 3 TRP TRP A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 ASP 9 5 5 ASP ASP A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 ARG 11 7 7 ARG ARG A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 THR 14 10 10 THR THR A . n A 1 15 LEU 15 11 11 LEU LEU A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 TRP 19 15 15 TRP TRP A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 ASP 21 17 17 ASP ASP A . n A 1 22 GLY 22 18 18 GLY GLY A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 GLN 27 23 23 GLN GLN A . n A 1 28 ILE 28 24 24 ILE ILE A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 LYS 30 26 26 LYS LYS A . n A 1 31 GLN 31 27 27 GLN GLN A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 GLY 33 29 29 GLY GLY A . n A 1 34 GLY 34 30 30 GLY GLY A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 THR 36 32 32 THR THR A . n A 1 37 ARG 37 33 33 ARG ARG A . n A 1 38 ASN 38 34 34 ASN ASN A . n A 1 39 ALA 39 35 35 ALA ALA A . n A 1 40 VAL 40 36 36 VAL VAL A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 LYS 43 39 39 LYS LYS A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 GLY 48 44 44 GLY GLY A . n A 1 49 LEU 49 45 45 LEU LEU A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 ALA 2 -2 ? ? ? B . n B 1 3 MET 3 -1 ? ? ? B . n B 1 4 ASP 4 0 ? ? ? B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 SER 6 2 2 SER SER B . n B 1 7 TRP 7 3 3 TRP TRP B . n B 1 8 THR 8 4 4 THR THR B . n B 1 9 ASP 9 5 5 ASP ASP B . n B 1 10 GLU 10 6 6 GLU GLU B . n B 1 11 ARG 11 7 7 ARG ARG B . n B 1 12 VAL 12 8 8 VAL VAL B . n B 1 13 SER 13 9 9 SER SER B . n B 1 14 THR 14 10 10 THR THR B . n B 1 15 LEU 15 11 11 LEU LEU B . n B 1 16 LYS 16 12 12 LYS LYS B . n B 1 17 LYS 17 13 13 LYS LYS B . n B 1 18 LEU 18 14 14 LEU LEU B . n B 1 19 TRP 19 15 15 TRP TRP B . n B 1 20 LEU 20 16 16 LEU LEU B . n B 1 21 ASP 21 17 17 ASP ASP B . n B 1 22 GLY 22 18 18 GLY GLY B . n B 1 23 LEU 23 19 19 LEU LEU B . n B 1 24 SER 24 20 20 SER SER B . n B 1 25 ALA 25 21 21 ALA ALA B . n B 1 26 SER 26 22 22 SER SER B . n B 1 27 GLN 27 23 23 GLN GLN B . n B 1 28 ILE 28 24 24 ILE ILE B . n B 1 29 ALA 29 25 25 ALA ALA B . n B 1 30 LYS 30 26 26 LYS LYS B . n B 1 31 GLN 31 27 27 GLN GLN B . n B 1 32 LEU 32 28 28 LEU LEU B . n B 1 33 GLY 33 29 29 GLY GLY B . n B 1 34 GLY 34 30 30 GLY GLY B . n B 1 35 VAL 35 31 31 VAL VAL B . n B 1 36 THR 36 32 32 THR THR B . n B 1 37 ARG 37 33 33 ARG ARG B . n B 1 38 ASN 38 34 34 ASN ASN B . n B 1 39 ALA 39 35 35 ALA ALA B . n B 1 40 VAL 40 36 36 VAL VAL B . n B 1 41 ILE 41 37 37 ILE ILE B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 LYS 43 39 39 LYS LYS B . n B 1 44 VAL 44 40 40 VAL VAL B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 LEU 47 43 43 LEU LEU B . n B 1 48 GLY 48 44 44 GLY GLY B . n B 1 49 LEU 49 45 45 LEU LEU B . n C 1 1 GLY 1 -3 ? ? ? C . n C 1 2 ALA 2 -2 ? ? ? C . n C 1 3 MET 3 -1 ? ? ? C . n C 1 4 ASP 4 0 ? ? ? C . n C 1 5 MET 5 1 1 MET MET C . n C 1 6 SER 6 2 2 SER SER C . n C 1 7 TRP 7 3 3 TRP TRP C . n C 1 8 THR 8 4 4 THR THR C . n C 1 9 ASP 9 5 5 ASP ASP C . n C 1 10 GLU 10 6 6 GLU GLU C . n C 1 11 ARG 11 7 7 ARG ARG C . n C 1 12 VAL 12 8 8 VAL VAL C . n C 1 13 SER 13 9 9 SER SER C . n C 1 14 THR 14 10 10 THR THR C . n C 1 15 LEU 15 11 11 LEU LEU C . n C 1 16 LYS 16 12 12 LYS LYS C . n C 1 17 LYS 17 13 13 LYS LYS C . n C 1 18 LEU 18 14 14 LEU LEU C . n C 1 19 TRP 19 15 15 TRP TRP C . n C 1 20 LEU 20 16 16 LEU LEU C . n C 1 21 ASP 21 17 17 ASP ASP C . n C 1 22 GLY 22 18 18 GLY GLY C . n C 1 23 LEU 23 19 19 LEU LEU C . n C 1 24 SER 24 20 20 SER SER C . n C 1 25 ALA 25 21 21 ALA ALA C . n C 1 26 SER 26 22 22 SER SER C . n C 1 27 GLN 27 23 23 GLN GLN C . n C 1 28 ILE 28 24 24 ILE ILE C . n C 1 29 ALA 29 25 25 ALA ALA C . n C 1 30 LYS 30 26 26 LYS LYS C . n C 1 31 GLN 31 27 27 GLN GLN C . n C 1 32 LEU 32 28 28 LEU LEU C . n C 1 33 GLY 33 29 29 GLY GLY C . n C 1 34 GLY 34 30 30 GLY GLY C . n C 1 35 VAL 35 31 31 VAL VAL C . n C 1 36 THR 36 32 32 THR THR C . n C 1 37 ARG 37 33 33 ARG ARG C . n C 1 38 ASN 38 34 34 ASN ASN C . n C 1 39 ALA 39 35 35 ALA ALA C . n C 1 40 VAL 40 36 36 VAL VAL C . n C 1 41 ILE 41 37 37 ILE ILE C . n C 1 42 GLY 42 38 38 GLY GLY C . n C 1 43 LYS 43 39 39 LYS LYS C . n C 1 44 VAL 44 40 40 VAL VAL C . n C 1 45 HIS 45 41 41 HIS HIS C . n C 1 46 ARG 46 42 42 ARG ARG C . n C 1 47 LEU 47 43 43 LEU LEU C . n C 1 48 GLY 48 44 44 GLY GLY C . n C 1 49 LEU 49 45 45 LEU LEU C . n D 1 1 GLY 1 -3 ? ? ? D . n D 1 2 ALA 2 -2 ? ? ? D . n D 1 3 MET 3 -1 ? ? ? D . n D 1 4 ASP 4 0 ? ? ? D . n D 1 5 MET 5 1 1 MET MET D . n D 1 6 SER 6 2 2 SER SER D . n D 1 7 TRP 7 3 3 TRP TRP D . n D 1 8 THR 8 4 4 THR THR D . n D 1 9 ASP 9 5 5 ASP ASP D . n D 1 10 GLU 10 6 6 GLU GLU D . n D 1 11 ARG 11 7 7 ARG ARG D . n D 1 12 VAL 12 8 8 VAL VAL D . n D 1 13 SER 13 9 9 SER SER D . n D 1 14 THR 14 10 10 THR THR D . n D 1 15 LEU 15 11 11 LEU LEU D . n D 1 16 LYS 16 12 12 LYS LYS D . n D 1 17 LYS 17 13 13 LYS LYS D . n D 1 18 LEU 18 14 14 LEU LEU D . n D 1 19 TRP 19 15 15 TRP TRP D . n D 1 20 LEU 20 16 16 LEU LEU D . n D 1 21 ASP 21 17 17 ASP ASP D . n D 1 22 GLY 22 18 18 GLY GLY D . n D 1 23 LEU 23 19 19 LEU LEU D . n D 1 24 SER 24 20 20 SER SER D . n D 1 25 ALA 25 21 21 ALA ALA D . n D 1 26 SER 26 22 22 SER SER D . n D 1 27 GLN 27 23 23 GLN GLN D . n D 1 28 ILE 28 24 24 ILE ILE D . n D 1 29 ALA 29 25 25 ALA ALA D . n D 1 30 LYS 30 26 26 LYS LYS D . n D 1 31 GLN 31 27 27 GLN GLN D . n D 1 32 LEU 32 28 28 LEU LEU D . n D 1 33 GLY 33 29 29 GLY GLY D . n D 1 34 GLY 34 30 30 GLY GLY D . n D 1 35 VAL 35 31 31 VAL VAL D . n D 1 36 THR 36 32 32 THR THR D . n D 1 37 ARG 37 33 33 ARG ARG D . n D 1 38 ASN 38 34 34 ASN ASN D . n D 1 39 ALA 39 35 35 ALA ALA D . n D 1 40 VAL 40 36 36 VAL VAL D . n D 1 41 ILE 41 37 37 ILE ILE D . n D 1 42 GLY 42 38 38 GLY GLY D . n D 1 43 LYS 43 39 39 LYS LYS D . n D 1 44 VAL 44 40 40 VAL VAL D . n D 1 45 HIS 45 41 41 HIS HIS D . n D 1 46 ARG 46 42 42 ARG ARG D . n D 1 47 LEU 47 43 43 LEU LEU D . n D 1 48 GLY 48 44 44 GLY GLY D . n D 1 49 LEU 49 45 45 LEU LEU D . n E 2 1 DC 1 1 1 DC DC E . n E 2 2 DC 2 2 2 DC DC E . n E 2 3 DT 3 3 3 DT DT E . n E 2 4 DG 4 4 4 DG DG E . n E 2 5 6MA 5 5 5 6MA 6MA E . n E 2 6 DT 6 6 6 DT DT E . n E 2 7 DT 7 7 7 DT DT E . n E 2 8 DC 8 8 8 DC DC E . n E 2 9 DG 9 9 9 DG DG E . n F 3 1 DC 1 -10 -10 DC DC F . n F 3 2 DC 2 -9 -9 DC DC F . n F 3 3 DG 3 -8 -8 DG DG F . n F 3 4 6MA 4 -7 -7 6MA 6MA F . n F 3 5 DA 5 -6 -6 DA DA F . n F 3 6 DT 6 -5 -5 DT DT F . n F 3 7 DC 7 -4 -4 DC DC F . n F 3 8 DA 8 -3 -3 DA DA F . n F 3 9 DG 9 -2 -2 DG DG F . n G 2 1 DC 1 1 ? ? ? G . n G 2 2 DC 2 2 2 DC DC G . n G 2 3 DT 3 3 3 DT DT G . n G 2 4 DG 4 4 4 DG DG G . n G 2 5 6MA 5 5 5 6MA 6MA G . n G 2 6 DT 6 6 6 DT DT G . n G 2 7 DT 7 7 7 DT DT G . n G 2 8 DC 8 8 8 DC DC G . n G 2 9 DG 9 9 9 DG DG G . n H 3 1 DC 1 -10 -10 DC DC H . n H 3 2 DC 2 -9 -9 DC DC H . n H 3 3 DG 3 -8 -8 DG DG H . n H 3 4 6MA 4 -7 -7 6MA 6MA H . n H 3 5 DA 5 -6 -6 DA DA H . n H 3 6 DT 6 -5 -5 DT DT H . n H 3 7 DC 7 -4 -4 DC DC H . n H 3 8 DA 8 -3 -3 DA DA H . n H 3 9 DG 9 -2 -2 DG DG H . n I 2 1 DC 1 1 1 DC DC I . n I 2 2 DC 2 2 2 DC DC I . n I 2 3 DT 3 3 3 DT DT I . n I 2 4 DG 4 4 4 DG DG I . n I 2 5 6MA 5 5 5 6MA 6MA I . n I 2 6 DT 6 6 6 DT DT I . n I 2 7 DT 7 7 7 DT DT I . n I 2 8 DC 8 8 8 DC DC I . n I 2 9 DG 9 9 9 DG DG I . n J 3 1 DC 1 -10 -10 DC DC J . n J 3 2 DC 2 -9 -9 DC DC J . n J 3 3 DG 3 -8 -8 DG DG J . n J 3 4 6MA 4 -7 -7 6MA 6MA J . n J 3 5 DA 5 -6 -6 DA DA J . n J 3 6 DT 6 -5 -5 DT DT J . n J 3 7 DC 7 -4 -4 DC DC J . n J 3 8 DA 8 -3 -3 DA DA J . n J 3 9 DG 9 -2 -2 DG DG J . n K 2 1 DC 1 1 ? ? ? K . n K 2 2 DC 2 2 2 DC DC K . n K 2 3 DT 3 3 3 DT DT K . n K 2 4 DG 4 4 4 DG DG K . n K 2 5 6MA 5 5 5 6MA 6MA K . n K 2 6 DT 6 6 6 DT DT K . n K 2 7 DT 7 7 7 DT DT K . n K 2 8 DC 8 8 8 DC DC K . n K 2 9 DG 9 9 9 DG DG K . n L 3 1 DC 1 -10 -10 DC DC L . n L 3 2 DC 2 -9 -9 DC DC L . n L 3 3 DG 3 -8 -8 DG DG L . n L 3 4 6MA 4 -7 -7 6MA 6MA L . n L 3 5 DA 5 -6 -6 DA DA L . n L 3 6 DT 6 -5 -5 DT DT L . n L 3 7 DC 7 -4 -4 DC DC L . n L 3 8 DA 8 -3 -3 DA DA L . n L 3 9 DG 9 -2 -2 DG DG L . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 HOH 1 101 1 HOH HOH F . N 4 HOH 1 101 2 HOH HOH J . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 3 author_and_software_defined_assembly PISA trimeric 3 4 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,E,F,M 2 1 B,G,H 3 1 C,I,J,N 4 1 D,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3750 ? 1 MORE 1 ? 1 'SSA (A^2)' 4960 ? 2 'ABSA (A^2)' 3630 ? 2 MORE 1 ? 2 'SSA (A^2)' 4600 ? 3 'ABSA (A^2)' 3730 ? 3 MORE 0 ? 3 'SSA (A^2)' 5140 ? 4 'ABSA (A^2)' 3630 ? 4 MORE 0 ? 4 'SSA (A^2)' 4680 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-21 2 'Structure model' 1 1 2018-04-18 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 G _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 G _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 G _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.85 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.55 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id D _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -104.38 _pdbx_validate_torsion.psi 66.90 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 6 ? CG ? B GLU 10 CG 2 1 Y 1 B GLU 6 ? CD ? B GLU 10 CD 3 1 Y 1 B GLU 6 ? OE1 ? B GLU 10 OE1 4 1 Y 1 B GLU 6 ? OE2 ? B GLU 10 OE2 5 1 Y 1 C LEU 45 ? CG ? C LEU 49 CG 6 1 Y 1 C LEU 45 ? CD1 ? C LEU 49 CD1 7 1 Y 1 C LEU 45 ? CD2 ? C LEU 49 CD2 8 1 Y 1 D MET 1 ? CG ? D MET 5 CG 9 1 Y 1 D MET 1 ? SD ? D MET 5 SD 10 1 Y 1 D MET 1 ? CE ? D MET 5 CE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A ALA -2 ? A ALA 2 3 1 Y 1 A MET -1 ? A MET 3 4 1 Y 1 A ASP 0 ? A ASP 4 5 1 Y 1 B GLY -3 ? B GLY 1 6 1 Y 1 B ALA -2 ? B ALA 2 7 1 Y 1 B MET -1 ? B MET 3 8 1 Y 1 B ASP 0 ? B ASP 4 9 1 Y 1 C GLY -3 ? C GLY 1 10 1 Y 1 C ALA -2 ? C ALA 2 11 1 Y 1 C MET -1 ? C MET 3 12 1 Y 1 C ASP 0 ? C ASP 4 13 1 Y 1 D GLY -3 ? D GLY 1 14 1 Y 1 D ALA -2 ? D ALA 2 15 1 Y 1 D MET -1 ? D MET 3 16 1 Y 1 D ASP 0 ? D ASP 4 17 1 Y 1 G DC 1 ? G DC 1 18 1 Y 1 K DC 1 ? K DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6MA OP3 O N N 1 6MA P P N N 2 6MA OP1 O N N 3 6MA OP2 O N N 4 6MA "O5'" O N N 5 6MA "C5'" C N N 6 6MA "C4'" C N R 7 6MA "O4'" O N N 8 6MA "C3'" C N S 9 6MA "O3'" O N N 10 6MA "C2'" C N N 11 6MA "C1'" C N R 12 6MA N9 N Y N 13 6MA C8 C Y N 14 6MA N7 N Y N 15 6MA C5 C Y N 16 6MA C6 C Y N 17 6MA N1 N Y N 18 6MA C2 C Y N 19 6MA N3 N Y N 20 6MA C4 C Y N 21 6MA N6 N N N 22 6MA C1 C N N 23 6MA HOP3 H N N 24 6MA HOP2 H N N 25 6MA "H5'" H N N 26 6MA "H5''" H N N 27 6MA "H4'" H N N 28 6MA "H3'" H N N 29 6MA "HO3'" H N N 30 6MA "H2'" H N N 31 6MA "H2''" H N N 32 6MA "H1'" H N N 33 6MA H8 H N N 34 6MA H2 H N N 35 6MA H61 H N N 36 6MA H11 H N N 37 6MA H12 H N N 38 6MA H13 H N N 39 ALA N N N N 40 ALA CA C N S 41 ALA C C N N 42 ALA O O N N 43 ALA CB C N N 44 ALA OXT O N N 45 ALA H H N N 46 ALA H2 H N N 47 ALA HA H N N 48 ALA HB1 H N N 49 ALA HB2 H N N 50 ALA HB3 H N N 51 ALA HXT H N N 52 ARG N N N N 53 ARG CA C N S 54 ARG C C N N 55 ARG O O N N 56 ARG CB C N N 57 ARG CG C N N 58 ARG CD C N N 59 ARG NE N N N 60 ARG CZ C N N 61 ARG NH1 N N N 62 ARG NH2 N N N 63 ARG OXT O N N 64 ARG H H N N 65 ARG H2 H N N 66 ARG HA H N N 67 ARG HB2 H N N 68 ARG HB3 H N N 69 ARG HG2 H N N 70 ARG HG3 H N N 71 ARG HD2 H N N 72 ARG HD3 H N N 73 ARG HE H N N 74 ARG HH11 H N N 75 ARG HH12 H N N 76 ARG HH21 H N N 77 ARG HH22 H N N 78 ARG HXT H N N 79 ASN N N N N 80 ASN CA C N S 81 ASN C C N N 82 ASN O O N N 83 ASN CB C N N 84 ASN CG C N N 85 ASN OD1 O N N 86 ASN ND2 N N N 87 ASN OXT O N N 88 ASN H H N N 89 ASN H2 H N N 90 ASN HA H N N 91 ASN HB2 H N N 92 ASN HB3 H N N 93 ASN HD21 H N N 94 ASN HD22 H N N 95 ASN HXT H N N 96 ASP N N N N 97 ASP CA C N S 98 ASP C C N N 99 ASP O O N N 100 ASP CB C N N 101 ASP CG C N N 102 ASP OD1 O N N 103 ASP OD2 O N N 104 ASP OXT O N N 105 ASP H H N N 106 ASP H2 H N N 107 ASP HA H N N 108 ASP HB2 H N N 109 ASP HB3 H N N 110 ASP HD2 H N N 111 ASP HXT H N N 112 DA OP3 O N N 113 DA P P N N 114 DA OP1 O N N 115 DA OP2 O N N 116 DA "O5'" O N N 117 DA "C5'" C N N 118 DA "C4'" C N R 119 DA "O4'" O N N 120 DA "C3'" C N S 121 DA "O3'" O N N 122 DA "C2'" C N N 123 DA "C1'" C N R 124 DA N9 N Y N 125 DA C8 C Y N 126 DA N7 N Y N 127 DA C5 C Y N 128 DA C6 C Y N 129 DA N6 N N N 130 DA N1 N Y N 131 DA C2 C Y N 132 DA N3 N Y N 133 DA C4 C Y N 134 DA HOP3 H N N 135 DA HOP2 H N N 136 DA "H5'" H N N 137 DA "H5''" H N N 138 DA "H4'" H N N 139 DA "H3'" H N N 140 DA "HO3'" H N N 141 DA "H2'" H N N 142 DA "H2''" H N N 143 DA "H1'" H N N 144 DA H8 H N N 145 DA H61 H N N 146 DA H62 H N N 147 DA H2 H N N 148 DC OP3 O N N 149 DC P P N N 150 DC OP1 O N N 151 DC OP2 O N N 152 DC "O5'" O N N 153 DC "C5'" C N N 154 DC "C4'" C N R 155 DC "O4'" O N N 156 DC "C3'" C N S 157 DC "O3'" O N N 158 DC "C2'" C N N 159 DC "C1'" C N R 160 DC N1 N N N 161 DC C2 C N N 162 DC O2 O N N 163 DC N3 N N N 164 DC C4 C N N 165 DC N4 N N N 166 DC C5 C N N 167 DC C6 C N N 168 DC HOP3 H N N 169 DC HOP2 H N N 170 DC "H5'" H N N 171 DC "H5''" H N N 172 DC "H4'" H N N 173 DC "H3'" H N N 174 DC "HO3'" H N N 175 DC "H2'" H N N 176 DC "H2''" H N N 177 DC "H1'" H N N 178 DC H41 H N N 179 DC H42 H N N 180 DC H5 H N N 181 DC H6 H N N 182 DG OP3 O N N 183 DG P P N N 184 DG OP1 O N N 185 DG OP2 O N N 186 DG "O5'" O N N 187 DG "C5'" C N N 188 DG "C4'" C N R 189 DG "O4'" O N N 190 DG "C3'" C N S 191 DG "O3'" O N N 192 DG "C2'" C N N 193 DG "C1'" C N R 194 DG N9 N Y N 195 DG C8 C Y N 196 DG N7 N Y N 197 DG C5 C Y N 198 DG C6 C N N 199 DG O6 O N N 200 DG N1 N N N 201 DG C2 C N N 202 DG N2 N N N 203 DG N3 N N N 204 DG C4 C Y N 205 DG HOP3 H N N 206 DG HOP2 H N N 207 DG "H5'" H N N 208 DG "H5''" H N N 209 DG "H4'" H N N 210 DG "H3'" H N N 211 DG "HO3'" H N N 212 DG "H2'" H N N 213 DG "H2''" H N N 214 DG "H1'" H N N 215 DG H8 H N N 216 DG H1 H N N 217 DG H21 H N N 218 DG H22 H N N 219 DT OP3 O N N 220 DT P P N N 221 DT OP1 O N N 222 DT OP2 O N N 223 DT "O5'" O N N 224 DT "C5'" C N N 225 DT "C4'" C N R 226 DT "O4'" O N N 227 DT "C3'" C N S 228 DT "O3'" O N N 229 DT "C2'" C N N 230 DT "C1'" C N R 231 DT N1 N N N 232 DT C2 C N N 233 DT O2 O N N 234 DT N3 N N N 235 DT C4 C N N 236 DT O4 O N N 237 DT C5 C N N 238 DT C7 C N N 239 DT C6 C N N 240 DT HOP3 H N N 241 DT HOP2 H N N 242 DT "H5'" H N N 243 DT "H5''" H N N 244 DT "H4'" H N N 245 DT "H3'" H N N 246 DT "HO3'" H N N 247 DT "H2'" H N N 248 DT "H2''" H N N 249 DT "H1'" H N N 250 DT H3 H N N 251 DT H71 H N N 252 DT H72 H N N 253 DT H73 H N N 254 DT H6 H N N 255 GLN N N N N 256 GLN CA C N S 257 GLN C C N N 258 GLN O O N N 259 GLN CB C N N 260 GLN CG C N N 261 GLN CD C N N 262 GLN OE1 O N N 263 GLN NE2 N N N 264 GLN OXT O N N 265 GLN H H N N 266 GLN H2 H N N 267 GLN HA H N N 268 GLN HB2 H N N 269 GLN HB3 H N N 270 GLN HG2 H N N 271 GLN HG3 H N N 272 GLN HE21 H N N 273 GLN HE22 H N N 274 GLN HXT H N N 275 GLU N N N N 276 GLU CA C N S 277 GLU C C N N 278 GLU O O N N 279 GLU CB C N N 280 GLU CG C N N 281 GLU CD C N N 282 GLU OE1 O N N 283 GLU OE2 O N N 284 GLU OXT O N N 285 GLU H H N N 286 GLU H2 H N N 287 GLU HA H N N 288 GLU HB2 H N N 289 GLU HB3 H N N 290 GLU HG2 H N N 291 GLU HG3 H N N 292 GLU HE2 H N N 293 GLU HXT H N N 294 GLY N N N N 295 GLY CA C N N 296 GLY C C N N 297 GLY O O N N 298 GLY OXT O N N 299 GLY H H N N 300 GLY H2 H N N 301 GLY HA2 H N N 302 GLY HA3 H N N 303 GLY HXT H N N 304 HIS N N N N 305 HIS CA C N S 306 HIS C C N N 307 HIS O O N N 308 HIS CB C N N 309 HIS CG C Y N 310 HIS ND1 N Y N 311 HIS CD2 C Y N 312 HIS CE1 C Y N 313 HIS NE2 N Y N 314 HIS OXT O N N 315 HIS H H N N 316 HIS H2 H N N 317 HIS HA H N N 318 HIS HB2 H N N 319 HIS HB3 H N N 320 HIS HD1 H N N 321 HIS HD2 H N N 322 HIS HE1 H N N 323 HIS HE2 H N N 324 HIS HXT H N N 325 HOH O O N N 326 HOH H1 H N N 327 HOH H2 H N N 328 ILE N N N N 329 ILE CA C N S 330 ILE C C N N 331 ILE O O N N 332 ILE CB C N S 333 ILE CG1 C N N 334 ILE CG2 C N N 335 ILE CD1 C N N 336 ILE OXT O N N 337 ILE H H N N 338 ILE H2 H N N 339 ILE HA H N N 340 ILE HB H N N 341 ILE HG12 H N N 342 ILE HG13 H N N 343 ILE HG21 H N N 344 ILE HG22 H N N 345 ILE HG23 H N N 346 ILE HD11 H N N 347 ILE HD12 H N N 348 ILE HD13 H N N 349 ILE HXT H N N 350 LEU N N N N 351 LEU CA C N S 352 LEU C C N N 353 LEU O O N N 354 LEU CB C N N 355 LEU CG C N N 356 LEU CD1 C N N 357 LEU CD2 C N N 358 LEU OXT O N N 359 LEU H H N N 360 LEU H2 H N N 361 LEU HA H N N 362 LEU HB2 H N N 363 LEU HB3 H N N 364 LEU HG H N N 365 LEU HD11 H N N 366 LEU HD12 H N N 367 LEU HD13 H N N 368 LEU HD21 H N N 369 LEU HD22 H N N 370 LEU HD23 H N N 371 LEU HXT H N N 372 LYS N N N N 373 LYS CA C N S 374 LYS C C N N 375 LYS O O N N 376 LYS CB C N N 377 LYS CG C N N 378 LYS CD C N N 379 LYS CE C N N 380 LYS NZ N N N 381 LYS OXT O N N 382 LYS H H N N 383 LYS H2 H N N 384 LYS HA H N N 385 LYS HB2 H N N 386 LYS HB3 H N N 387 LYS HG2 H N N 388 LYS HG3 H N N 389 LYS HD2 H N N 390 LYS HD3 H N N 391 LYS HE2 H N N 392 LYS HE3 H N N 393 LYS HZ1 H N N 394 LYS HZ2 H N N 395 LYS HZ3 H N N 396 LYS HXT H N N 397 MET N N N N 398 MET CA C N S 399 MET C C N N 400 MET O O N N 401 MET CB C N N 402 MET CG C N N 403 MET SD S N N 404 MET CE C N N 405 MET OXT O N N 406 MET H H N N 407 MET H2 H N N 408 MET HA H N N 409 MET HB2 H N N 410 MET HB3 H N N 411 MET HG2 H N N 412 MET HG3 H N N 413 MET HE1 H N N 414 MET HE2 H N N 415 MET HE3 H N N 416 MET HXT H N N 417 SER N N N N 418 SER CA C N S 419 SER C C N N 420 SER O O N N 421 SER CB C N N 422 SER OG O N N 423 SER OXT O N N 424 SER H H N N 425 SER H2 H N N 426 SER HA H N N 427 SER HB2 H N N 428 SER HB3 H N N 429 SER HG H N N 430 SER HXT H N N 431 THR N N N N 432 THR CA C N S 433 THR C C N N 434 THR O O N N 435 THR CB C N R 436 THR OG1 O N N 437 THR CG2 C N N 438 THR OXT O N N 439 THR H H N N 440 THR H2 H N N 441 THR HA H N N 442 THR HB H N N 443 THR HG1 H N N 444 THR HG21 H N N 445 THR HG22 H N N 446 THR HG23 H N N 447 THR HXT H N N 448 TRP N N N N 449 TRP CA C N S 450 TRP C C N N 451 TRP O O N N 452 TRP CB C N N 453 TRP CG C Y N 454 TRP CD1 C Y N 455 TRP CD2 C Y N 456 TRP NE1 N Y N 457 TRP CE2 C Y N 458 TRP CE3 C Y N 459 TRP CZ2 C Y N 460 TRP CZ3 C Y N 461 TRP CH2 C Y N 462 TRP OXT O N N 463 TRP H H N N 464 TRP H2 H N N 465 TRP HA H N N 466 TRP HB2 H N N 467 TRP HB3 H N N 468 TRP HD1 H N N 469 TRP HE1 H N N 470 TRP HE3 H N N 471 TRP HZ2 H N N 472 TRP HZ3 H N N 473 TRP HH2 H N N 474 TRP HXT H N N 475 VAL N N N N 476 VAL CA C N S 477 VAL C C N N 478 VAL O O N N 479 VAL CB C N N 480 VAL CG1 C N N 481 VAL CG2 C N N 482 VAL OXT O N N 483 VAL H H N N 484 VAL H2 H N N 485 VAL HA H N N 486 VAL HB H N N 487 VAL HG11 H N N 488 VAL HG12 H N N 489 VAL HG13 H N N 490 VAL HG21 H N N 491 VAL HG22 H N N 492 VAL HG23 H N N 493 VAL HXT H N N 494 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6MA OP3 P sing N N 1 6MA OP3 HOP3 sing N N 2 6MA P OP1 doub N N 3 6MA P OP2 sing N N 4 6MA P "O5'" sing N N 5 6MA OP2 HOP2 sing N N 6 6MA "O5'" "C5'" sing N N 7 6MA "C5'" "C4'" sing N N 8 6MA "C5'" "H5'" sing N N 9 6MA "C5'" "H5''" sing N N 10 6MA "C4'" "O4'" sing N N 11 6MA "C4'" "C3'" sing N N 12 6MA "C4'" "H4'" sing N N 13 6MA "O4'" "C1'" sing N N 14 6MA "C3'" "O3'" sing N N 15 6MA "C3'" "C2'" sing N N 16 6MA "C3'" "H3'" sing N N 17 6MA "O3'" "HO3'" sing N N 18 6MA "C2'" "C1'" sing N N 19 6MA "C2'" "H2'" sing N N 20 6MA "C2'" "H2''" sing N N 21 6MA "C1'" N9 sing N N 22 6MA "C1'" "H1'" sing N N 23 6MA N9 C8 sing Y N 24 6MA N9 C4 sing Y N 25 6MA C8 N7 doub Y N 26 6MA C8 H8 sing N N 27 6MA N7 C5 sing Y N 28 6MA C5 C6 sing Y N 29 6MA C5 C4 doub Y N 30 6MA C6 N1 doub Y N 31 6MA C6 N6 sing N N 32 6MA N1 C2 sing Y N 33 6MA C2 N3 doub Y N 34 6MA C2 H2 sing N N 35 6MA N3 C4 sing Y N 36 6MA N6 C1 sing N N 37 6MA N6 H61 sing N N 38 6MA C1 H11 sing N N 39 6MA C1 H12 sing N N 40 6MA C1 H13 sing N N 41 ALA N CA sing N N 42 ALA N H sing N N 43 ALA N H2 sing N N 44 ALA CA C sing N N 45 ALA CA CB sing N N 46 ALA CA HA sing N N 47 ALA C O doub N N 48 ALA C OXT sing N N 49 ALA CB HB1 sing N N 50 ALA CB HB2 sing N N 51 ALA CB HB3 sing N N 52 ALA OXT HXT sing N N 53 ARG N CA sing N N 54 ARG N H sing N N 55 ARG N H2 sing N N 56 ARG CA C sing N N 57 ARG CA CB sing N N 58 ARG CA HA sing N N 59 ARG C O doub N N 60 ARG C OXT sing N N 61 ARG CB CG sing N N 62 ARG CB HB2 sing N N 63 ARG CB HB3 sing N N 64 ARG CG CD sing N N 65 ARG CG HG2 sing N N 66 ARG CG HG3 sing N N 67 ARG CD NE sing N N 68 ARG CD HD2 sing N N 69 ARG CD HD3 sing N N 70 ARG NE CZ sing N N 71 ARG NE HE sing N N 72 ARG CZ NH1 sing N N 73 ARG CZ NH2 doub N N 74 ARG NH1 HH11 sing N N 75 ARG NH1 HH12 sing N N 76 ARG NH2 HH21 sing N N 77 ARG NH2 HH22 sing N N 78 ARG OXT HXT sing N N 79 ASN N CA sing N N 80 ASN N H sing N N 81 ASN N H2 sing N N 82 ASN CA C sing N N 83 ASN CA CB sing N N 84 ASN CA HA sing N N 85 ASN C O doub N N 86 ASN C OXT sing N N 87 ASN CB CG sing N N 88 ASN CB HB2 sing N N 89 ASN CB HB3 sing N N 90 ASN CG OD1 doub N N 91 ASN CG ND2 sing N N 92 ASN ND2 HD21 sing N N 93 ASN ND2 HD22 sing N N 94 ASN OXT HXT sing N N 95 ASP N CA sing N N 96 ASP N H sing N N 97 ASP N H2 sing N N 98 ASP CA C sing N N 99 ASP CA CB sing N N 100 ASP CA HA sing N N 101 ASP C O doub N N 102 ASP C OXT sing N N 103 ASP CB CG sing N N 104 ASP CB HB2 sing N N 105 ASP CB HB3 sing N N 106 ASP CG OD1 doub N N 107 ASP CG OD2 sing N N 108 ASP OD2 HD2 sing N N 109 ASP OXT HXT sing N N 110 DA OP3 P sing N N 111 DA OP3 HOP3 sing N N 112 DA P OP1 doub N N 113 DA P OP2 sing N N 114 DA P "O5'" sing N N 115 DA OP2 HOP2 sing N N 116 DA "O5'" "C5'" sing N N 117 DA "C5'" "C4'" sing N N 118 DA "C5'" "H5'" sing N N 119 DA "C5'" "H5''" sing N N 120 DA "C4'" "O4'" sing N N 121 DA "C4'" "C3'" sing N N 122 DA "C4'" "H4'" sing N N 123 DA "O4'" "C1'" sing N N 124 DA "C3'" "O3'" sing N N 125 DA "C3'" "C2'" sing N N 126 DA "C3'" "H3'" sing N N 127 DA "O3'" "HO3'" sing N N 128 DA "C2'" "C1'" sing N N 129 DA "C2'" "H2'" sing N N 130 DA "C2'" "H2''" sing N N 131 DA "C1'" N9 sing N N 132 DA "C1'" "H1'" sing N N 133 DA N9 C8 sing Y N 134 DA N9 C4 sing Y N 135 DA C8 N7 doub Y N 136 DA C8 H8 sing N N 137 DA N7 C5 sing Y N 138 DA C5 C6 sing Y N 139 DA C5 C4 doub Y N 140 DA C6 N6 sing N N 141 DA C6 N1 doub Y N 142 DA N6 H61 sing N N 143 DA N6 H62 sing N N 144 DA N1 C2 sing Y N 145 DA C2 N3 doub Y N 146 DA C2 H2 sing N N 147 DA N3 C4 sing Y N 148 DC OP3 P sing N N 149 DC OP3 HOP3 sing N N 150 DC P OP1 doub N N 151 DC P OP2 sing N N 152 DC P "O5'" sing N N 153 DC OP2 HOP2 sing N N 154 DC "O5'" "C5'" sing N N 155 DC "C5'" "C4'" sing N N 156 DC "C5'" "H5'" sing N N 157 DC "C5'" "H5''" sing N N 158 DC "C4'" "O4'" sing N N 159 DC "C4'" "C3'" sing N N 160 DC "C4'" "H4'" sing N N 161 DC "O4'" "C1'" sing N N 162 DC "C3'" "O3'" sing N N 163 DC "C3'" "C2'" sing N N 164 DC "C3'" "H3'" sing N N 165 DC "O3'" "HO3'" sing N N 166 DC "C2'" "C1'" sing N N 167 DC "C2'" "H2'" sing N N 168 DC "C2'" "H2''" sing N N 169 DC "C1'" N1 sing N N 170 DC "C1'" "H1'" sing N N 171 DC N1 C2 sing N N 172 DC N1 C6 sing N N 173 DC C2 O2 doub N N 174 DC C2 N3 sing N N 175 DC N3 C4 doub N N 176 DC C4 N4 sing N N 177 DC C4 C5 sing N N 178 DC N4 H41 sing N N 179 DC N4 H42 sing N N 180 DC C5 C6 doub N N 181 DC C5 H5 sing N N 182 DC C6 H6 sing N N 183 DG OP3 P sing N N 184 DG OP3 HOP3 sing N N 185 DG P OP1 doub N N 186 DG P OP2 sing N N 187 DG P "O5'" sing N N 188 DG OP2 HOP2 sing N N 189 DG "O5'" "C5'" sing N N 190 DG "C5'" "C4'" sing N N 191 DG "C5'" "H5'" sing N N 192 DG "C5'" "H5''" sing N N 193 DG "C4'" "O4'" sing N N 194 DG "C4'" "C3'" sing N N 195 DG "C4'" "H4'" sing N N 196 DG "O4'" "C1'" sing N N 197 DG "C3'" "O3'" sing N N 198 DG "C3'" "C2'" sing N N 199 DG "C3'" "H3'" sing N N 200 DG "O3'" "HO3'" sing N N 201 DG "C2'" "C1'" sing N N 202 DG "C2'" "H2'" sing N N 203 DG "C2'" "H2''" sing N N 204 DG "C1'" N9 sing N N 205 DG "C1'" "H1'" sing N N 206 DG N9 C8 sing Y N 207 DG N9 C4 sing Y N 208 DG C8 N7 doub Y N 209 DG C8 H8 sing N N 210 DG N7 C5 sing Y N 211 DG C5 C6 sing N N 212 DG C5 C4 doub Y N 213 DG C6 O6 doub N N 214 DG C6 N1 sing N N 215 DG N1 C2 sing N N 216 DG N1 H1 sing N N 217 DG C2 N2 sing N N 218 DG C2 N3 doub N N 219 DG N2 H21 sing N N 220 DG N2 H22 sing N N 221 DG N3 C4 sing N N 222 DT OP3 P sing N N 223 DT OP3 HOP3 sing N N 224 DT P OP1 doub N N 225 DT P OP2 sing N N 226 DT P "O5'" sing N N 227 DT OP2 HOP2 sing N N 228 DT "O5'" "C5'" sing N N 229 DT "C5'" "C4'" sing N N 230 DT "C5'" "H5'" sing N N 231 DT "C5'" "H5''" sing N N 232 DT "C4'" "O4'" sing N N 233 DT "C4'" "C3'" sing N N 234 DT "C4'" "H4'" sing N N 235 DT "O4'" "C1'" sing N N 236 DT "C3'" "O3'" sing N N 237 DT "C3'" "C2'" sing N N 238 DT "C3'" "H3'" sing N N 239 DT "O3'" "HO3'" sing N N 240 DT "C2'" "C1'" sing N N 241 DT "C2'" "H2'" sing N N 242 DT "C2'" "H2''" sing N N 243 DT "C1'" N1 sing N N 244 DT "C1'" "H1'" sing N N 245 DT N1 C2 sing N N 246 DT N1 C6 sing N N 247 DT C2 O2 doub N N 248 DT C2 N3 sing N N 249 DT N3 C4 sing N N 250 DT N3 H3 sing N N 251 DT C4 O4 doub N N 252 DT C4 C5 sing N N 253 DT C5 C7 sing N N 254 DT C5 C6 doub N N 255 DT C7 H71 sing N N 256 DT C7 H72 sing N N 257 DT C7 H73 sing N N 258 DT C6 H6 sing N N 259 GLN N CA sing N N 260 GLN N H sing N N 261 GLN N H2 sing N N 262 GLN CA C sing N N 263 GLN CA CB sing N N 264 GLN CA HA sing N N 265 GLN C O doub N N 266 GLN C OXT sing N N 267 GLN CB CG sing N N 268 GLN CB HB2 sing N N 269 GLN CB HB3 sing N N 270 GLN CG CD sing N N 271 GLN CG HG2 sing N N 272 GLN CG HG3 sing N N 273 GLN CD OE1 doub N N 274 GLN CD NE2 sing N N 275 GLN NE2 HE21 sing N N 276 GLN NE2 HE22 sing N N 277 GLN OXT HXT sing N N 278 GLU N CA sing N N 279 GLU N H sing N N 280 GLU N H2 sing N N 281 GLU CA C sing N N 282 GLU CA CB sing N N 283 GLU CA HA sing N N 284 GLU C O doub N N 285 GLU C OXT sing N N 286 GLU CB CG sing N N 287 GLU CB HB2 sing N N 288 GLU CB HB3 sing N N 289 GLU CG CD sing N N 290 GLU CG HG2 sing N N 291 GLU CG HG3 sing N N 292 GLU CD OE1 doub N N 293 GLU CD OE2 sing N N 294 GLU OE2 HE2 sing N N 295 GLU OXT HXT sing N N 296 GLY N CA sing N N 297 GLY N H sing N N 298 GLY N H2 sing N N 299 GLY CA C sing N N 300 GLY CA HA2 sing N N 301 GLY CA HA3 sing N N 302 GLY C O doub N N 303 GLY C OXT sing N N 304 GLY OXT HXT sing N N 305 HIS N CA sing N N 306 HIS N H sing N N 307 HIS N H2 sing N N 308 HIS CA C sing N N 309 HIS CA CB sing N N 310 HIS CA HA sing N N 311 HIS C O doub N N 312 HIS C OXT sing N N 313 HIS CB CG sing N N 314 HIS CB HB2 sing N N 315 HIS CB HB3 sing N N 316 HIS CG ND1 sing Y N 317 HIS CG CD2 doub Y N 318 HIS ND1 CE1 doub Y N 319 HIS ND1 HD1 sing N N 320 HIS CD2 NE2 sing Y N 321 HIS CD2 HD2 sing N N 322 HIS CE1 NE2 sing Y N 323 HIS CE1 HE1 sing N N 324 HIS NE2 HE2 sing N N 325 HIS OXT HXT sing N N 326 HOH O H1 sing N N 327 HOH O H2 sing N N 328 ILE N CA sing N N 329 ILE N H sing N N 330 ILE N H2 sing N N 331 ILE CA C sing N N 332 ILE CA CB sing N N 333 ILE CA HA sing N N 334 ILE C O doub N N 335 ILE C OXT sing N N 336 ILE CB CG1 sing N N 337 ILE CB CG2 sing N N 338 ILE CB HB sing N N 339 ILE CG1 CD1 sing N N 340 ILE CG1 HG12 sing N N 341 ILE CG1 HG13 sing N N 342 ILE CG2 HG21 sing N N 343 ILE CG2 HG22 sing N N 344 ILE CG2 HG23 sing N N 345 ILE CD1 HD11 sing N N 346 ILE CD1 HD12 sing N N 347 ILE CD1 HD13 sing N N 348 ILE OXT HXT sing N N 349 LEU N CA sing N N 350 LEU N H sing N N 351 LEU N H2 sing N N 352 LEU CA C sing N N 353 LEU CA CB sing N N 354 LEU CA HA sing N N 355 LEU C O doub N N 356 LEU C OXT sing N N 357 LEU CB CG sing N N 358 LEU CB HB2 sing N N 359 LEU CB HB3 sing N N 360 LEU CG CD1 sing N N 361 LEU CG CD2 sing N N 362 LEU CG HG sing N N 363 LEU CD1 HD11 sing N N 364 LEU CD1 HD12 sing N N 365 LEU CD1 HD13 sing N N 366 LEU CD2 HD21 sing N N 367 LEU CD2 HD22 sing N N 368 LEU CD2 HD23 sing N N 369 LEU OXT HXT sing N N 370 LYS N CA sing N N 371 LYS N H sing N N 372 LYS N H2 sing N N 373 LYS CA C sing N N 374 LYS CA CB sing N N 375 LYS CA HA sing N N 376 LYS C O doub N N 377 LYS C OXT sing N N 378 LYS CB CG sing N N 379 LYS CB HB2 sing N N 380 LYS CB HB3 sing N N 381 LYS CG CD sing N N 382 LYS CG HG2 sing N N 383 LYS CG HG3 sing N N 384 LYS CD CE sing N N 385 LYS CD HD2 sing N N 386 LYS CD HD3 sing N N 387 LYS CE NZ sing N N 388 LYS CE HE2 sing N N 389 LYS CE HE3 sing N N 390 LYS NZ HZ1 sing N N 391 LYS NZ HZ2 sing N N 392 LYS NZ HZ3 sing N N 393 LYS OXT HXT sing N N 394 MET N CA sing N N 395 MET N H sing N N 396 MET N H2 sing N N 397 MET CA C sing N N 398 MET CA CB sing N N 399 MET CA HA sing N N 400 MET C O doub N N 401 MET C OXT sing N N 402 MET CB CG sing N N 403 MET CB HB2 sing N N 404 MET CB HB3 sing N N 405 MET CG SD sing N N 406 MET CG HG2 sing N N 407 MET CG HG3 sing N N 408 MET SD CE sing N N 409 MET CE HE1 sing N N 410 MET CE HE2 sing N N 411 MET CE HE3 sing N N 412 MET OXT HXT sing N N 413 SER N CA sing N N 414 SER N H sing N N 415 SER N H2 sing N N 416 SER CA C sing N N 417 SER CA CB sing N N 418 SER CA HA sing N N 419 SER C O doub N N 420 SER C OXT sing N N 421 SER CB OG sing N N 422 SER CB HB2 sing N N 423 SER CB HB3 sing N N 424 SER OG HG sing N N 425 SER OXT HXT sing N N 426 THR N CA sing N N 427 THR N H sing N N 428 THR N H2 sing N N 429 THR CA C sing N N 430 THR CA CB sing N N 431 THR CA HA sing N N 432 THR C O doub N N 433 THR C OXT sing N N 434 THR CB OG1 sing N N 435 THR CB CG2 sing N N 436 THR CB HB sing N N 437 THR OG1 HG1 sing N N 438 THR CG2 HG21 sing N N 439 THR CG2 HG22 sing N N 440 THR CG2 HG23 sing N N 441 THR OXT HXT sing N N 442 TRP N CA sing N N 443 TRP N H sing N N 444 TRP N H2 sing N N 445 TRP CA C sing N N 446 TRP CA CB sing N N 447 TRP CA HA sing N N 448 TRP C O doub N N 449 TRP C OXT sing N N 450 TRP CB CG sing N N 451 TRP CB HB2 sing N N 452 TRP CB HB3 sing N N 453 TRP CG CD1 doub Y N 454 TRP CG CD2 sing Y N 455 TRP CD1 NE1 sing Y N 456 TRP CD1 HD1 sing N N 457 TRP CD2 CE2 doub Y N 458 TRP CD2 CE3 sing Y N 459 TRP NE1 CE2 sing Y N 460 TRP NE1 HE1 sing N N 461 TRP CE2 CZ2 sing Y N 462 TRP CE3 CZ3 doub Y N 463 TRP CE3 HE3 sing N N 464 TRP CZ2 CH2 doub Y N 465 TRP CZ2 HZ2 sing N N 466 TRP CZ3 CH2 sing Y N 467 TRP CZ3 HZ3 sing N N 468 TRP CH2 HH2 sing N N 469 TRP OXT HXT sing N N 470 VAL N CA sing N N 471 VAL N H sing N N 472 VAL N H2 sing N N 473 VAL CA C sing N N 474 VAL CA CB sing N N 475 VAL CA HA sing N N 476 VAL C O doub N N 477 VAL C OXT sing N N 478 VAL CB CG1 sing N N 479 VAL CB CG2 sing N N 480 VAL CB HB sing N N 481 VAL CG1 HG11 sing N N 482 VAL CG1 HG12 sing N N 483 VAL CG1 HG13 sing N N 484 VAL CG2 HG21 sing N N 485 VAL CG2 HG22 sing N N 486 VAL CG2 HG23 sing N N 487 VAL OXT HXT sing N N 488 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5YIV 'double helix' 5YIV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 E DT 3 1_555 F DA 8 1_555 0.586 0.102 -0.023 10.124 -13.001 6.327 1 E_DT3:DA-3_F E 3 ? F -3 ? 20 1 1 E DG 4 1_555 F DC 7 1_555 0.489 -0.225 -0.274 5.837 -6.474 3.959 2 E_DG4:DC-4_F E 4 ? F -4 ? 19 1 1 E 6MA 5 1_555 F DT 6 1_555 -0.491 -0.036 0.023 -7.038 -12.034 5.290 3 E_6MA5:DT-5_F E 5 ? F -5 ? 20 1 1 E DT 6 1_555 F DA 5 1_555 -0.310 -0.253 0.522 -5.310 -14.451 -5.506 4 E_DT6:DA-6_F E 6 ? F -6 ? 20 1 1 E DT 7 1_555 F 6MA 4 1_555 -0.705 -0.016 0.736 -7.917 -27.419 -7.355 5 E_DT7:6MA-7_F E 7 ? F -7 ? 20 1 1 E DC 8 1_555 F DG 3 1_555 0.363 -0.091 0.776 -16.565 -3.948 3.300 6 E_DC8:DG-8_F E 8 ? F -8 ? 19 1 1 E DG 9 1_555 F DC 2 1_555 0.228 -0.320 0.503 5.372 -8.366 -3.028 7 E_DG9:DC-9_F E 9 ? F -9 ? 19 1 1 H DC 2 1_555 G DG 9 1_555 0.212 -0.050 0.491 -0.013 -8.392 3.292 8 H_DC-9:DG9_G H -9 ? G 9 ? 19 1 1 H DG 3 1_555 G DC 8 1_555 0.135 -0.092 0.282 13.759 -13.366 8.516 9 H_DG-8:DC8_G H -8 ? G 8 ? 19 1 1 H 6MA 4 1_555 G DT 7 1_555 -0.185 -0.151 0.458 4.224 -26.220 -5.158 10 H_6MA-7:DT7_G H -7 ? G 7 ? 20 1 1 H DA 5 1_555 G DT 6 1_555 0.125 -0.121 0.421 -0.413 -12.269 -1.447 11 H_DA-6:DT6_G H -6 ? G 6 ? 20 1 1 H DT 6 1_555 G 6MA 5 1_555 0.357 0.029 -0.038 4.608 -17.703 -0.460 12 H_DT-5:6MA5_G H -5 ? G 5 ? 20 1 1 H DC 7 1_555 G DG 4 1_555 0.258 0.207 -0.424 13.757 -5.012 4.971 13 H_DC-4:DG4_G H -4 ? G 4 ? 19 1 1 H DA 8 1_555 G DT 3 1_555 -0.275 0.131 0.196 4.778 -13.178 12.799 14 H_DA-3:DT3_G H -3 ? G 3 ? 20 1 1 H DG 9 1_555 G DC 2 1_555 0.718 5.270 0.256 -17.924 -4.087 -68.267 15 H_DG-2:DC2_G H -2 ? G 2 ? ? ? 1 I DT 3 1_555 J DA 8 1_555 0.404 -0.041 0.034 9.631 -6.147 -1.456 16 I_DT3:DA-3_J I 3 ? J -3 ? 20 1 1 I DG 4 1_555 J DC 7 1_555 -0.269 -0.239 -0.069 6.054 -4.491 3.032 17 I_DG4:DC-4_J I 4 ? J -4 ? 19 1 1 I 6MA 5 1_555 J DT 6 1_555 0.250 -0.141 0.176 -0.355 -17.593 -0.647 18 I_6MA5:DT-5_J I 5 ? J -5 ? 20 1 1 I DT 6 1_555 J DA 5 1_555 -0.430 -0.459 0.451 -1.401 -12.938 -8.274 19 I_DT6:DA-6_J I 6 ? J -6 ? 20 1 1 I DT 7 1_555 J 6MA 4 1_555 -0.269 0.173 0.698 -7.639 -24.593 -2.313 20 I_DT7:6MA-7_J I 7 ? J -7 ? 20 1 1 I DC 8 1_555 J DG 3 1_555 -0.184 0.131 0.416 -16.683 -3.495 7.791 21 I_DC8:DG-8_J I 8 ? J -8 ? 19 1 1 I DG 9 1_555 J DC 2 1_555 0.202 -0.147 0.233 -1.515 -3.400 0.365 22 I_DG9:DC-9_J I 9 ? J -9 ? 19 1 1 L DC 2 1_555 K DG 9 1_555 0.002 0.099 0.270 -2.899 -9.336 -0.137 23 L_DC-9:DG9_K L -9 ? K 9 ? 19 1 1 L DG 3 1_555 K DC 8 1_555 -0.432 0.171 0.188 9.191 -12.257 10.703 24 L_DG-8:DC8_K L -8 ? K 8 ? 19 1 1 L 6MA 4 1_555 K DT 7 1_555 0.168 -0.079 0.186 3.218 -31.881 -6.540 25 L_6MA-7:DT7_K L -7 ? K 7 ? 20 1 1 L DA 5 1_555 K DT 6 1_555 0.308 -0.213 0.088 1.224 -16.441 2.424 26 L_DA-6:DT6_K L -6 ? K 6 ? 20 1 1 L DT 6 1_555 K 6MA 5 1_555 0.119 0.073 -0.032 4.219 -16.592 2.895 27 L_DT-5:6MA5_K L -5 ? K 5 ? 20 1 1 L DC 7 1_555 K DG 4 1_555 0.364 0.064 -0.485 4.212 -4.277 4.121 28 L_DC-4:DG4_K L -4 ? K 4 ? 19 1 1 L DA 8 1_555 K DT 3 1_555 0.236 0.111 0.016 8.437 -15.280 15.014 29 L_DA-3:DT3_K L -3 ? K 3 ? 20 1 1 L DG 9 1_555 K DC 2 1_555 -0.001 -0.061 -0.275 -1.838 -18.379 4.400 30 L_DG-2:DC2_K L -2 ? K 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 E DT 3 1_555 F DA 8 1_555 E DG 4 1_555 F DC 7 1_555 -0.469 -0.466 3.461 4.526 10.346 31.995 -2.514 1.554 3.074 18.080 -7.909 33.881 1 EE_DT3DG4:DC-4DA-3_FF E 3 ? F -3 ? E 4 ? F -4 ? 1 E DG 4 1_555 F DC 7 1_555 E 6MA 5 1_555 F DT 6 1_555 -0.211 -0.467 3.543 -2.662 -3.674 36.432 -0.193 -0.063 3.577 -5.848 4.238 36.704 2 EE_DG46MA5:DT-5DC-4_FF E 4 ? F -4 ? E 5 ? F -5 ? 1 E 6MA 5 1_555 F DT 6 1_555 E DT 6 1_555 F DA 5 1_555 -0.432 -0.925 3.170 -3.970 -0.503 33.899 -1.498 0.120 3.212 -0.859 6.779 34.127 3 EE_6MA5DT6:DA-6DT-5_FF E 5 ? F -5 ? E 6 ? F -6 ? 1 E DT 6 1_555 F DA 5 1_555 E DT 7 1_555 F 6MA 4 1_555 -0.277 -0.750 3.180 -2.034 -6.524 35.821 -0.299 0.162 3.272 -10.489 3.271 36.446 4 EE_DT6DT7:6MA-7DA-6_FF E 6 ? F -6 ? E 7 ? F -7 ? 1 E DT 7 1_555 F 6MA 4 1_555 E DC 8 1_555 F DG 3 1_555 0.865 0.227 3.695 2.243 -6.280 45.089 0.918 -0.895 3.670 -8.137 -2.906 45.554 5 EE_DT7DC8:DG-86MA-7_FF E 7 ? F -7 ? E 8 ? F -8 ? 1 E DC 8 1_555 F DG 3 1_555 E DG 9 1_555 F DC 2 1_555 -0.612 0.552 2.814 -0.378 3.807 29.902 0.385 1.111 2.868 7.341 0.728 30.140 6 EE_DC8DG9:DC-9DG-8_FF E 8 ? F -8 ? E 9 ? F -9 ? 1 E DG 9 1_555 F DC 2 1_555 H DC 2 1_555 G DG 9 1_555 0.202 2.631 3.889 -0.277 -1.392 -40.041 -3.648 0.257 3.976 2.032 -0.405 -40.066 7 EH_DG9DC-9:DG9DC-9_GF E 9 ? F -9 ? H -9 ? G 9 ? 1 H DC 2 1_555 G DG 9 1_555 H DG 3 1_555 G DC 8 1_555 0.536 0.583 3.079 3.426 7.394 30.054 -0.288 -0.362 3.170 13.939 -6.458 31.115 8 HH_DC-9DG-8:DC8DG9_GG H -9 ? G 9 ? H -8 ? G 8 ? 1 H DG 3 1_555 G DC 8 1_555 H 6MA 4 1_555 G DT 7 1_555 -1.044 0.187 3.567 -4.257 -5.156 37.027 1.032 1.008 3.603 -8.039 6.636 37.605 9 HH_DG-86MA-7:DT7DC8_GG H -8 ? G 8 ? H -7 ? G 7 ? 1 H 6MA 4 1_555 G DT 7 1_555 H DA 5 1_555 G DT 6 1_555 0.156 -0.651 3.337 0.027 -4.885 39.856 -0.375 -0.224 3.390 -7.133 -0.040 40.142 10 HH_6MA-7DA-6:DT6DT7_GG H -7 ? G 7 ? H -6 ? G 6 ? 1 H DA 5 1_555 G DT 6 1_555 H DT 6 1_555 G 6MA 5 1_555 -0.020 -0.744 3.072 3.094 1.376 34.519 -1.445 0.477 3.028 2.312 -5.199 34.680 11 HH_DA-6DT-5:6MA5DT6_GG H -6 ? G 6 ? H -5 ? G 5 ? 1 H DT 6 1_555 G 6MA 5 1_555 H DC 7 1_555 G DG 4 1_555 0.693 -0.553 3.272 1.817 -0.721 30.905 -0.896 -0.944 3.318 -1.352 -3.405 30.965 12 HH_DT-5DC-4:DG46MA5_GG H -5 ? G 5 ? H -4 ? G 4 ? 1 H DC 7 1_555 G DG 4 1_555 H DA 8 1_555 G DT 3 1_555 0.303 -0.716 3.483 -6.306 14.845 28.881 -3.807 -1.615 2.687 27.247 11.573 32.996 13 HH_DC-4DA-3:DT3DG4_GG H -4 ? G 4 ? H -3 ? G 3 ? 1 H DA 8 1_555 G DT 3 1_555 H DG 9 1_555 G DC 2 1_555 0.558 -2.705 3.222 3.675 8.728 74.156 -2.486 -0.353 2.956 7.210 -3.036 74.672 14 HH_DA-3DG-2:DC2DT3_GG H -3 ? G 3 ? H -2 ? G 2 ? 1 I DT 3 1_555 J DA 8 1_555 I DG 4 1_555 J DC 7 1_555 0.244 -0.880 3.486 3.976 2.453 25.766 -2.648 0.604 3.388 5.444 -8.823 26.179 15 II_DT3DG4:DC-4DA-3_JJ I 3 ? J -3 ? I 4 ? J -4 ? 1 I DG 4 1_555 J DC 7 1_555 I 6MA 5 1_555 J DT 6 1_555 -0.232 -0.279 3.404 0.186 -3.330 44.961 -0.052 0.320 3.414 -4.347 -0.242 45.078 16 II_DG46MA5:DT-5DC-4_JJ I 4 ? J -4 ? I 5 ? J -5 ? 1 I 6MA 5 1_555 J DT 6 1_555 I DT 6 1_555 J DA 5 1_555 -0.435 -0.832 3.342 -2.220 -0.919 32.290 -1.324 0.376 3.385 -1.650 3.985 32.377 17 II_6MA5DT6:DA-6DT-5_JJ I 5 ? J -5 ? I 6 ? J -6 ? 1 I DT 6 1_555 J DA 5 1_555 I DT 7 1_555 J 6MA 4 1_555 -0.011 -0.970 3.284 -2.279 -0.574 37.434 -1.433 -0.282 3.293 -0.893 3.546 37.505 18 II_DT6DT7:6MA-7DA-6_JJ I 6 ? J -6 ? I 7 ? J -7 ? 1 I DT 7 1_555 J 6MA 4 1_555 I DC 8 1_555 J DG 3 1_555 1.016 0.573 3.617 3.226 -8.169 40.780 1.755 -1.053 3.510 -11.562 -4.565 41.676 19 II_DT7DC8:DG-86MA-7_JJ I 7 ? J -7 ? I 8 ? J -8 ? 1 I DC 8 1_555 J DG 3 1_555 I DG 9 1_555 J DC 2 1_555 -0.852 1.019 3.089 -1.244 3.801 33.399 1.161 1.275 3.211 6.583 2.155 33.631 20 II_DC8DG9:DC-9DG-8_JJ I 8 ? J -8 ? I 9 ? J -9 ? 1 I DG 9 1_555 J DC 2 1_555 L DC 2 1_555 K DG 9 1_555 0.102 2.747 3.555 0.507 0.133 -44.286 -3.658 0.187 3.546 -0.176 0.672 -44.289 21 IL_DG9DC-9:DG9DC-9_KJ I 9 ? J -9 ? L -9 ? K 9 ? 1 L DC 2 1_555 K DG 9 1_555 L DG 3 1_555 K DC 8 1_555 0.853 0.835 3.075 2.199 7.026 32.247 0.307 -1.136 3.230 12.447 -3.896 33.055 22 LL_DC-9DG-8:DC8DG9_KK L -9 ? K 9 ? L -8 ? K 8 ? 1 L DG 3 1_555 K DC 8 1_555 L 6MA 4 1_555 K DT 7 1_555 -1.505 0.236 3.581 -4.505 -4.027 39.251 0.872 1.631 3.684 -5.953 6.658 39.695 23 LL_DG-86MA-7:DT7DC8_KK L -8 ? K 8 ? L -7 ? K 7 ? 1 L 6MA 4 1_555 K DT 7 1_555 L DA 5 1_555 K DT 6 1_555 0.554 -0.203 3.287 1.980 -3.440 40.762 0.091 -0.573 3.315 -4.925 -2.834 40.947 24 LL_6MA-7DA-6:DT6DT7_KK L -7 ? K 7 ? L -6 ? K 6 ? 1 L DA 5 1_555 K DT 6 1_555 L DT 6 1_555 K 6MA 5 1_555 -0.111 -0.675 3.151 0.148 1.607 29.731 -1.635 0.247 3.110 3.128 -0.288 29.774 25 LL_DA-6DT-5:6MA5DT6_KK L -6 ? K 6 ? L -5 ? K 5 ? 1 L DT 6 1_555 K 6MA 5 1_555 L DC 7 1_555 K DG 4 1_555 0.870 -0.572 3.397 5.085 -0.944 35.551 -0.785 -0.642 3.497 -1.537 -8.274 35.913 26 LL_DT-5DC-4:DG46MA5_KK L -5 ? K 5 ? L -4 ? K 4 ? 1 L DC 7 1_555 K DG 4 1_555 L DA 8 1_555 K DT 3 1_555 0.433 -0.376 3.242 -4.397 17.128 27.920 -3.454 -1.480 2.509 31.783 8.159 32.955 27 LL_DC-4DA-3:DT3DG4_KK L -4 ? K 4 ? L -3 ? K 3 ? 1 L DA 8 1_555 K DT 3 1_555 L DG 9 1_555 K DC 2 1_555 -0.466 -1.108 3.472 -1.843 12.107 32.573 -3.725 0.497 2.910 20.696 3.151 34.741 28 LL_DA-3DG-2:DC2DT3_KK L -3 ? K 3 ? L -2 ? K 2 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31670067 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 6MA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 6MA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5YIU _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #