data_5YIW # _entry.id 5YIW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YIW pdb_00005yiw 10.2210/pdb5yiw/pdb WWPDB D_1300005310 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YIW _pdbx_database_status.recvd_initial_deposition_date 2017-10-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wu, X.' 1 ? 'Zhang, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 3245 _citation.page_last 3256 _citation.title 'Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky161 _citation.pdbx_database_id_PubMed 29514271 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, X.' 1 ? primary 'Haakonsen, D.L.' 2 ? primary 'Sanderlin, A.G.' 3 ? primary 'Liu, Y.J.' 4 ? primary 'Shen, L.' 5 ? primary 'Zhuang, N.' 6 ? primary 'Laub, M.T.' 7 ? primary 'Zhang, Y.' 8 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YIW _cell.details ? _cell.formula_units_Z ? _cell.length_a 49.810 _cell.length_a_esd ? _cell.length_b 63.658 _cell.length_b_esd ? _cell.length_c 126.730 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cell cycle regulatory protein GcrA' 5317.199 3 ? ? 'DNA-binding domain (DBD)' ? 2 polymer syn ;DNA (5'-D(*CP*CP*CP*TP*GP*(6MA)P*TP*TP*CP*GP*C)-3') ; 3299.174 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(P*GP*CP*GP*(6MA)P*AP*TP*CP*AP*GP*G)-3') ; 3397.250 1 ? ? ? ? 4 non-polymer syn '(R,R)-2,3-BUTANEDIOL' 90.121 1 ? ? ? ? 5 water nat water 18.015 119 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL GAMDMSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL A,B,C ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DC)(DT)(DG)(6MA)(DT)(DT)(DC)(DG)(DC)' CCCTGATTCGC D ? 3 polydeoxyribonucleotide no yes '(DC)(DG)(DC)(DG)(6MA)(DA)(DT)(DC)(DA)(DG)(DG)' CGCGAATCAGG E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 ASP n 1 5 MET n 1 6 SER n 1 7 TRP n 1 8 THR n 1 9 ASP n 1 10 GLU n 1 11 ARG n 1 12 VAL n 1 13 SER n 1 14 THR n 1 15 LEU n 1 16 LYS n 1 17 LYS n 1 18 LEU n 1 19 TRP n 1 20 LEU n 1 21 ASP n 1 22 GLY n 1 23 LEU n 1 24 SER n 1 25 ALA n 1 26 SER n 1 27 GLN n 1 28 ILE n 1 29 ALA n 1 30 LYS n 1 31 GLN n 1 32 LEU n 1 33 GLY n 1 34 GLY n 1 35 VAL n 1 36 THR n 1 37 ARG n 1 38 ASN n 1 39 ALA n 1 40 VAL n 1 41 ILE n 1 42 GLY n 1 43 LYS n 1 44 VAL n 1 45 HIS n 1 46 ARG n 1 47 LEU n 1 48 GLY n 1 49 LEU n 2 1 DC n 2 2 DC n 2 3 DC n 2 4 DT n 2 5 DG n 2 6 6MA n 2 7 DT n 2 8 DT n 2 9 DC n 2 10 DG n 2 11 DC n 3 1 DC n 3 2 DG n 3 3 DC n 3 4 DG n 3 5 6MA n 3 6 DA n 3 7 DT n 3 8 DC n 3 9 DA n 3 10 DG n 3 11 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 49 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'gcrA, CCNA_02328' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'NA1000 / CB15N' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caulobacter crescentus (strain NA1000 / CB15N)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 565050 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 12 'synthetic construct' ? 32630 ? 3 1 sample 1 11 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP A0A0H3C9J4_CAUCN A0A0H3C9J4 ? 1 MSWTDERVSTLKKLWLDGLSASQIAKQLGGVTRNAVIGKVHRLGL 1 2 PDB 5YIW 5YIW ? 2 ? 1 3 PDB 5YIW 5YIW ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YIW A 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 2 1 5YIW B 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 3 1 5YIW C 5 ? 49 ? A0A0H3C9J4 1 ? 45 ? 1 45 4 2 5YIW D 1 ? 11 ? 5YIW 1 ? 11 ? 1 11 5 3 5YIW E 1 ? 11 ? 5YIW -12 ? -2 ? -12 -2 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YIW GLY A 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 1 1 5YIW ALA A 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 2 1 5YIW MET A 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 3 1 5YIW ASP A 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 4 2 5YIW GLY B 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 5 2 5YIW ALA B 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 6 2 5YIW MET B 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 7 2 5YIW ASP B 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 8 3 5YIW GLY C 1 ? UNP A0A0H3C9J4 ? ? 'expression tag' -3 9 3 5YIW ALA C 2 ? UNP A0A0H3C9J4 ? ? 'expression tag' -2 10 3 5YIW MET C 3 ? UNP A0A0H3C9J4 ? ? 'expression tag' -1 11 3 5YIW ASP C 4 ? UNP A0A0H3C9J4 ? ? 'expression tag' 0 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6MA 'DNA linking' n "N6-METHYL-DEOXY-ADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O6 P' 345.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BU3 non-polymer . '(R,R)-2,3-BUTANEDIOL' ? 'C4 H10 O2' 90.121 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YIW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 8000, 0.05M Potassium phosphate monobasic' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-05-08 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 19.46 _reflns.entry_id 5YIW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 29530 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.2 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 22.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.95 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.07 _reflns.pdbx_Rpim_I_all 0.03 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.58 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1394 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.74 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 6.9 _reflns_shell.pdbx_Rsym_value 0.74 _reflns_shell.pdbx_chi_squared 0.95 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.80 _reflns_shell.pdbx_Rpim_I_all 0.30 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.88 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 27.70 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YIW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.551 _refine.ls_d_res_low 28.745 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 29459 _refine.ls_number_reflns_R_free 1472 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.49 _refine.ls_percent_reflns_R_free 5.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2052 _refine.ls_R_factor_R_free 0.2340 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2036 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5YIU _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.68 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.15 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1024 _refine_hist.pdbx_number_atoms_nucleic_acid 434 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 119 _refine_hist.number_atoms_total 1577 _refine_hist.d_res_high 1.551 _refine_hist.d_res_low 28.745 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 1527 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.008 ? 2148 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 20.786 ? 569 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.037 ? 253 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 191 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5507 1.6007 . . 126 2488 99.00 . . . 0.3294 . 0.2695 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6007 1.6580 . . 131 2510 100.00 . . . 0.2792 . 0.2414 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6580 1.7243 . . 122 2508 99.00 . . . 0.2875 . 0.2166 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7243 1.8028 . . 139 2524 100.00 . . . 0.2223 . 0.2043 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8028 1.8978 . . 133 2537 100.00 . . . 0.2619 . 0.2087 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8978 2.0167 . . 127 2575 100.00 . . . 0.2373 . 0.2143 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0167 2.1724 . . 128 2520 100.00 . . . 0.2706 . 0.2017 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1724 2.3909 . . 143 2568 100.00 . . . 0.2152 . 0.2039 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3909 2.7366 . . 137 2562 100.00 . . . 0.2327 . 0.2232 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.7366 3.4469 . . 132 2570 99.00 . . . 0.2510 . 0.2153 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4469 28.7504 . . 154 2625 97.00 . . . 0.2081 . 0.1784 . . . . . . . . . . # _struct.entry_id 5YIW _struct.title 'Caulobacter crescentus GcrA DNA-binding domain (DBD) in complex with methylated dsDNA (crystal form 2)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YIW _struct_keywords.text 'Caulobacter crescentus, GcrA, DNA-binding, transcription factor, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA complex' _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 5 ? K N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 8 ? ASP A 21 ? THR A 4 ASP A 17 1 ? 14 HELX_P HELX_P2 AA2 SER A 24 ? GLY A 33 ? SER A 20 GLY A 29 1 ? 10 HELX_P HELX_P3 AA3 THR A 36 ? LEU A 47 ? THR A 32 LEU A 43 1 ? 12 HELX_P HELX_P4 AA4 THR B 8 ? ASP B 21 ? THR B 4 ASP B 17 1 ? 14 HELX_P HELX_P5 AA5 SER B 24 ? GLY B 33 ? SER B 20 GLY B 29 1 ? 10 HELX_P HELX_P6 AA6 THR B 36 ? GLY B 48 ? THR B 32 GLY B 44 1 ? 13 HELX_P HELX_P7 AA7 THR C 8 ? ASP C 21 ? THR C 4 ASP C 17 1 ? 14 HELX_P HELX_P8 AA8 SER C 24 ? GLY C 33 ? SER C 20 GLY C 29 1 ? 10 HELX_P HELX_P9 AA9 THR C 36 ? LEU C 47 ? THR C 32 LEU C 43 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? E DG 4 "O3'" ? ? ? 1_555 E 6MA 5 P ? ? E DG -9 E 6MA -8 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale2 covale both ? E 6MA 5 "O3'" ? ? ? 1_555 E DA 6 P ? ? E 6MA -8 E DA -7 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? D DG 5 "O3'" ? ? ? 1_555 D 6MA 6 P ? ? D DG 5 D 6MA 6 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? D 6MA 6 "O3'" ? ? ? 1_555 D DT 7 P ? ? D 6MA 6 D DT 7 1_555 ? ? ? ? ? ? ? 1.598 ? ? hydrog1 hydrog ? ? D DC 2 N3 ? ? ? 1_555 E DG 11 N1 ? ? D DC 2 E DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? D DC 2 N4 ? ? ? 1_555 E DG 11 O6 ? ? D DC 2 E DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? D DC 2 O2 ? ? ? 1_555 E DG 11 N2 ? ? D DC 2 E DG -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? D DC 3 N3 ? ? ? 1_555 E DG 10 N1 ? ? D DC 3 E DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? D DC 3 N4 ? ? ? 1_555 E DG 10 O6 ? ? D DC 3 E DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DG 10 N2 ? ? D DC 3 E DG -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? D DT 4 N3 ? ? ? 1_555 E DA 9 N1 ? ? D DT 4 E DA -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? D DT 4 O4 ? ? ? 1_555 E DA 9 N6 ? ? D DT 4 E DA -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? D DG 5 N1 ? ? ? 1_555 E DC 8 N3 ? ? D DG 5 E DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? D DG 5 N2 ? ? ? 1_555 E DC 8 O2 ? ? D DG 5 E DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? D DG 5 O6 ? ? ? 1_555 E DC 8 N4 ? ? D DG 5 E DC -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? D 6MA 6 N1 ? ? ? 1_555 E DT 7 N3 ? ? D 6MA 6 E DT -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? D 6MA 6 N6 ? ? ? 1_555 E DT 7 O4 ? ? D 6MA 6 E DT -6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? D DT 7 N3 ? ? ? 1_555 E DA 6 N1 ? ? D DT 7 E DA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? D DT 7 O4 ? ? ? 1_555 E DA 6 N6 ? ? D DT 7 E DA -7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? D DT 8 N3 ? ? ? 1_555 E 6MA 5 N1 ? ? D DT 8 E 6MA -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? D DT 8 O4 ? ? ? 1_555 E 6MA 5 N6 ? ? D DT 8 E 6MA -8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? D DC 9 N3 ? ? ? 1_555 E DG 4 N1 ? ? D DC 9 E DG -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? D DC 9 N4 ? ? ? 1_555 E DG 4 O6 ? ? D DC 9 E DG -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? D DC 9 O2 ? ? ? 1_555 E DG 4 N2 ? ? D DC 9 E DG -9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? D DG 10 N1 ? ? ? 1_555 E DC 3 N3 ? ? D DG 10 E DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? D DG 10 N2 ? ? ? 1_555 E DC 3 O2 ? ? D DG 10 E DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? D DG 10 O6 ? ? ? 1_555 E DC 3 N4 ? ? D DG 10 E DC -10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? D DC 11 N3 ? ? ? 1_555 E DG 2 N1 ? ? D DC 11 E DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? D DC 11 N4 ? ? ? 1_555 E DG 2 O6 ? ? D DC 11 E DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? D DC 11 O2 ? ? ? 1_555 E DG 2 N2 ? ? D DC 11 E DG -11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D BU3 1000 ? 6 'binding site for residue BU3 D 1000' AC2 Software D DG 5 ? 22 'binding site for Di-nucleotide DG D 5 and 6MA D 6' AC3 Software D 6MA 6 ? 16 'binding site for Di-nucleotide 6MA D 6 and DT D 7' AC4 Software E 6MA -8 ? 17 'binding site for Di-nucleotide 6MA E -8 and DA E -7' AC5 Software E DG -9 ? 20 'binding site for Di-nucleotide DG E -9 and 6MA E -8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN B 38 ? ASN B 34 . ? 5_555 ? 2 AC1 6 DG D 10 ? DG D 10 . ? 1_555 ? 3 AC1 6 DC D 11 ? DC D 11 . ? 1_555 ? 4 AC1 6 HOH J . ? HOH D 1102 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH D 1110 . ? 1_555 ? 6 AC1 6 DG E 4 ? DG E -9 . ? 1_555 ? 7 AC2 22 TRP A 19 ? TRP A 15 . ? 1_555 ? 8 AC2 22 SER A 24 ? SER A 20 . ? 1_555 ? 9 AC2 22 ALA A 25 ? ALA A 21 . ? 1_555 ? 10 AC2 22 ARG A 37 ? ARG A 33 . ? 1_555 ? 11 AC2 22 ASN A 38 ? ASN A 34 . ? 1_555 ? 12 AC2 22 ILE A 41 ? ILE A 37 . ? 1_555 ? 13 AC2 22 HIS A 45 ? HIS A 41 . ? 1_555 ? 14 AC2 22 ALA C 29 ? ALA C 25 . ? 1_555 ? 15 AC2 22 LYS C 30 ? LYS C 26 . ? 1_555 ? 16 AC2 22 GLY C 34 ? GLY C 30 . ? 1_555 ? 17 AC2 22 VAL C 35 ? VAL C 31 . ? 1_555 ? 18 AC2 22 THR C 36 ? THR C 32 . ? 1_555 ? 19 AC2 22 ARG C 37 ? ARG C 33 . ? 1_555 ? 20 AC2 22 DT D 4 ? DT D 4 . ? 1_555 ? 21 AC2 22 DT D 7 ? DT D 7 . ? 1_555 ? 22 AC2 22 HOH J . ? HOH D 1106 . ? 1_555 ? 23 AC2 22 HOH J . ? HOH D 1107 . ? 1_555 ? 24 AC2 22 HOH J . ? HOH D 1115 . ? 1_555 ? 25 AC2 22 DA E 6 ? DA E -7 . ? 1_555 ? 26 AC2 22 DT E 7 ? DT E -6 . ? 1_555 ? 27 AC2 22 DC E 8 ? DC E -5 . ? 1_555 ? 28 AC2 22 DA E 9 ? DA E -4 . ? 1_555 ? 29 AC3 16 ASN A 38 ? ASN A 34 . ? 1_555 ? 30 AC3 16 ILE A 41 ? ILE A 37 . ? 1_555 ? 31 AC3 16 HIS A 45 ? HIS A 41 . ? 1_555 ? 32 AC3 16 THR C 36 ? THR C 32 . ? 1_555 ? 33 AC3 16 ARG C 37 ? ARG C 33 . ? 1_555 ? 34 AC3 16 DG D 5 ? DG D 5 . ? 1_555 ? 35 AC3 16 DT D 8 ? DT D 8 . ? 1_555 ? 36 AC3 16 HOH J . ? HOH D 1107 . ? 1_555 ? 37 AC3 16 HOH J . ? HOH D 1109 . ? 1_555 ? 38 AC3 16 HOH J . ? HOH D 1114 . ? 1_555 ? 39 AC3 16 HOH J . ? HOH D 1115 . ? 1_555 ? 40 AC3 16 DA E 6 ? DA E -7 . ? 1_555 ? 41 AC3 16 DC E 8 ? DC E -5 . ? 1_555 ? 42 AC3 16 6MA E 5 ? 6MA E -8 . ? 1_555 ? 43 AC3 16 DT E 7 ? DT E -6 . ? 1_555 ? 44 AC3 16 HOH K . ? HOH E 106 . ? 1_555 ? 45 AC4 17 THR A 36 ? THR A 32 . ? 1_555 ? 46 AC4 17 ASN A 38 ? ASN A 34 . ? 1_555 ? 47 AC4 17 ARG B 37 ? ARG B 33 . ? 5_555 ? 48 AC4 17 ILE B 41 ? ILE B 37 . ? 5_555 ? 49 AC4 17 HOH H . ? HOH B 101 . ? 5_555 ? 50 AC4 17 6MA D 6 ? 6MA D 6 . ? 1_555 ? 51 AC4 17 DT D 7 ? DT D 7 . ? 1_555 ? 52 AC4 17 DT D 8 ? DT D 8 . ? 1_555 ? 53 AC4 17 HOH J . ? HOH D 1102 . ? 1_555 ? 54 AC4 17 DG E 4 ? DG E -9 . ? 1_555 ? 55 AC4 17 DT E 7 ? DT E -6 . ? 1_555 ? 56 AC4 17 HOH K . ? HOH E 104 . ? 1_555 ? 57 AC4 17 HOH K . ? HOH E 111 . ? 1_555 ? 58 AC4 17 HOH K . ? HOH E 113 . ? 1_555 ? 59 AC4 17 HOH K . ? HOH E 114 . ? 1_555 ? 60 AC4 17 HOH K . ? HOH E 115 . ? 1_555 ? 61 AC4 17 HOH K . ? HOH E 116 . ? 1_555 ? 62 AC5 20 TRP A 7 ? TRP A 3 . ? 1_555 ? 63 AC5 20 THR A 36 ? THR A 32 . ? 1_555 ? 64 AC5 20 ASN A 38 ? ASN A 34 . ? 1_555 ? 65 AC5 20 ALA A 39 ? ALA A 35 . ? 1_555 ? 66 AC5 20 ARG A 46 ? ARG A 42 . ? 1_555 ? 67 AC5 20 HOH G . ? HOH A 101 . ? 1_555 ? 68 AC5 20 HOH G . ? HOH A 105 . ? 1_555 ? 69 AC5 20 DT D 7 ? DT D 7 . ? 1_555 ? 70 AC5 20 DT D 8 ? DT D 8 . ? 1_555 ? 71 AC5 20 DC D 9 ? DC D 9 . ? 1_555 ? 72 AC5 20 DG D 10 ? DG D 10 . ? 1_555 ? 73 AC5 20 BU3 F . ? BU3 D 1000 . ? 1_555 ? 74 AC5 20 HOH J . ? HOH D 1102 . ? 1_555 ? 75 AC5 20 DA E 6 ? DA E -7 . ? 1_555 ? 76 AC5 20 DC E 3 ? DC E -10 . ? 1_555 ? 77 AC5 20 HOH K . ? HOH E 107 . ? 1_555 ? 78 AC5 20 HOH K . ? HOH E 109 . ? 1_555 ? 79 AC5 20 HOH K . ? HOH E 111 . ? 1_555 ? 80 AC5 20 HOH K . ? HOH E 113 . ? 1_555 ? 81 AC5 20 HOH K . ? HOH E 115 . ? 1_555 ? # _atom_sites.entry_id 5YIW _atom_sites.fract_transf_matrix[1][1] 0.020076 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015709 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007891 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 ALA 2 -2 ? ? ? A . n A 1 3 MET 3 -1 ? ? ? A . n A 1 4 ASP 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 SER 6 2 2 SER SER A . n A 1 7 TRP 7 3 3 TRP TRP A . n A 1 8 THR 8 4 4 THR THR A . n A 1 9 ASP 9 5 5 ASP ASP A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 ARG 11 7 7 ARG ARG A . n A 1 12 VAL 12 8 8 VAL VAL A . n A 1 13 SER 13 9 9 SER SER A . n A 1 14 THR 14 10 10 THR THR A . n A 1 15 LEU 15 11 11 LEU LEU A . n A 1 16 LYS 16 12 12 LYS LYS A . n A 1 17 LYS 17 13 13 LYS LYS A . n A 1 18 LEU 18 14 14 LEU LEU A . n A 1 19 TRP 19 15 15 TRP TRP A . n A 1 20 LEU 20 16 16 LEU LEU A . n A 1 21 ASP 21 17 17 ASP ASP A . n A 1 22 GLY 22 18 18 GLY GLY A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 SER 24 20 20 SER SER A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 GLN 27 23 23 GLN GLN A . n A 1 28 ILE 28 24 24 ILE ILE A . n A 1 29 ALA 29 25 25 ALA ALA A . n A 1 30 LYS 30 26 26 LYS LYS A . n A 1 31 GLN 31 27 27 GLN GLN A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 GLY 33 29 29 GLY GLY A . n A 1 34 GLY 34 30 30 GLY GLY A . n A 1 35 VAL 35 31 31 VAL VAL A . n A 1 36 THR 36 32 32 THR THR A . n A 1 37 ARG 37 33 33 ARG ARG A . n A 1 38 ASN 38 34 34 ASN ASN A . n A 1 39 ALA 39 35 35 ALA ALA A . n A 1 40 VAL 40 36 36 VAL VAL A . n A 1 41 ILE 41 37 37 ILE ILE A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 LYS 43 39 39 LYS LYS A . n A 1 44 VAL 44 40 40 VAL VAL A . n A 1 45 HIS 45 41 41 HIS HIS A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 GLY 48 44 44 GLY GLY A . n A 1 49 LEU 49 45 45 LEU LEU A . n B 1 1 GLY 1 -3 ? ? ? B . n B 1 2 ALA 2 -2 ? ? ? B . n B 1 3 MET 3 -1 ? ? ? B . n B 1 4 ASP 4 0 ? ? ? B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 SER 6 2 2 SER SER B . n B 1 7 TRP 7 3 3 TRP TRP B . n B 1 8 THR 8 4 4 THR THR B . n B 1 9 ASP 9 5 5 ASP ASP B . n B 1 10 GLU 10 6 6 GLU GLU B . n B 1 11 ARG 11 7 7 ARG ARG B . n B 1 12 VAL 12 8 8 VAL VAL B . n B 1 13 SER 13 9 9 SER SER B . n B 1 14 THR 14 10 10 THR THR B . n B 1 15 LEU 15 11 11 LEU LEU B . n B 1 16 LYS 16 12 12 LYS LYS B . n B 1 17 LYS 17 13 13 LYS LYS B . n B 1 18 LEU 18 14 14 LEU LEU B . n B 1 19 TRP 19 15 15 TRP TRP B . n B 1 20 LEU 20 16 16 LEU LEU B . n B 1 21 ASP 21 17 17 ASP ASP B . n B 1 22 GLY 22 18 18 GLY GLY B . n B 1 23 LEU 23 19 19 LEU LEU B . n B 1 24 SER 24 20 20 SER SER B . n B 1 25 ALA 25 21 21 ALA ALA B . n B 1 26 SER 26 22 22 SER SER B . n B 1 27 GLN 27 23 23 GLN GLN B . n B 1 28 ILE 28 24 24 ILE ILE B . n B 1 29 ALA 29 25 25 ALA ALA B . n B 1 30 LYS 30 26 26 LYS LYS B . n B 1 31 GLN 31 27 27 GLN GLN B . n B 1 32 LEU 32 28 28 LEU LEU B . n B 1 33 GLY 33 29 29 GLY GLY B . n B 1 34 GLY 34 30 30 GLY GLY B . n B 1 35 VAL 35 31 31 VAL VAL B . n B 1 36 THR 36 32 32 THR THR B . n B 1 37 ARG 37 33 33 ARG ARG B . n B 1 38 ASN 38 34 34 ASN ASN B . n B 1 39 ALA 39 35 35 ALA ALA B . n B 1 40 VAL 40 36 36 VAL VAL B . n B 1 41 ILE 41 37 37 ILE ILE B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 LYS 43 39 39 LYS LYS B . n B 1 44 VAL 44 40 40 VAL VAL B . n B 1 45 HIS 45 41 41 HIS HIS B . n B 1 46 ARG 46 42 42 ARG ARG B . n B 1 47 LEU 47 43 43 LEU LEU B . n B 1 48 GLY 48 44 44 GLY GLY B . n B 1 49 LEU 49 45 45 LEU LEU B . n C 1 1 GLY 1 -3 ? ? ? C . n C 1 2 ALA 2 -2 ? ? ? C . n C 1 3 MET 3 -1 ? ? ? C . n C 1 4 ASP 4 0 ? ? ? C . n C 1 5 MET 5 1 1 MET MET C . n C 1 6 SER 6 2 2 SER SER C . n C 1 7 TRP 7 3 3 TRP TRP C . n C 1 8 THR 8 4 4 THR THR C . n C 1 9 ASP 9 5 5 ASP ASP C . n C 1 10 GLU 10 6 6 GLU GLU C . n C 1 11 ARG 11 7 7 ARG ARG C . n C 1 12 VAL 12 8 8 VAL VAL C . n C 1 13 SER 13 9 9 SER SER C . n C 1 14 THR 14 10 10 THR THR C . n C 1 15 LEU 15 11 11 LEU LEU C . n C 1 16 LYS 16 12 12 LYS LYS C . n C 1 17 LYS 17 13 13 LYS LYS C . n C 1 18 LEU 18 14 14 LEU LEU C . n C 1 19 TRP 19 15 15 TRP TRP C . n C 1 20 LEU 20 16 16 LEU LEU C . n C 1 21 ASP 21 17 17 ASP ASP C . n C 1 22 GLY 22 18 18 GLY GLY C . n C 1 23 LEU 23 19 19 LEU LEU C . n C 1 24 SER 24 20 20 SER SER C . n C 1 25 ALA 25 21 21 ALA ALA C . n C 1 26 SER 26 22 22 SER SER C . n C 1 27 GLN 27 23 23 GLN GLN C . n C 1 28 ILE 28 24 24 ILE ILE C . n C 1 29 ALA 29 25 25 ALA ALA C . n C 1 30 LYS 30 26 26 LYS LYS C . n C 1 31 GLN 31 27 27 GLN GLN C . n C 1 32 LEU 32 28 28 LEU LEU C . n C 1 33 GLY 33 29 29 GLY GLY C . n C 1 34 GLY 34 30 30 GLY GLY C . n C 1 35 VAL 35 31 31 VAL VAL C . n C 1 36 THR 36 32 32 THR THR C . n C 1 37 ARG 37 33 33 ARG ARG C . n C 1 38 ASN 38 34 34 ASN ASN C . n C 1 39 ALA 39 35 35 ALA ALA C . n C 1 40 VAL 40 36 36 VAL VAL C . n C 1 41 ILE 41 37 37 ILE ILE C . n C 1 42 GLY 42 38 38 GLY GLY C . n C 1 43 LYS 43 39 39 LYS LYS C . n C 1 44 VAL 44 40 40 VAL VAL C . n C 1 45 HIS 45 41 41 HIS HIS C . n C 1 46 ARG 46 42 42 ARG ARG C . n C 1 47 LEU 47 43 43 LEU LEU C . n C 1 48 GLY 48 44 44 GLY GLY C . n C 1 49 LEU 49 45 45 LEU LEU C . n D 2 1 DC 1 1 1 DC DC D . n D 2 2 DC 2 2 2 DC DC D . n D 2 3 DC 3 3 3 DC DC D . n D 2 4 DT 4 4 4 DT DT D . n D 2 5 DG 5 5 5 DG DG D . n D 2 6 6MA 6 6 6 6MA 6MA D . n D 2 7 DT 7 7 7 DT DT D . n D 2 8 DT 8 8 8 DT DT D . n D 2 9 DC 9 9 9 DC DC D . n D 2 10 DG 10 10 10 DG DG D . n D 2 11 DC 11 11 11 DC DC D . n E 3 1 DC 1 -12 ? ? ? E . n E 3 2 DG 2 -11 -11 DG DG E . n E 3 3 DC 3 -10 -10 DC DC E . n E 3 4 DG 4 -9 -9 DG DG E . n E 3 5 6MA 5 -8 -8 6MA 6MA E . n E 3 6 DA 6 -7 -7 DA DA E . n E 3 7 DT 7 -6 -6 DT DT E . n E 3 8 DC 8 -5 -5 DC DC E . n E 3 9 DA 9 -4 -4 DA DA E . n E 3 10 DG 10 -3 -3 DG DG E . n E 3 11 DG 11 -2 -2 DG DG E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 BU3 1 1000 1000 BU3 BU3 D . G 5 HOH 1 101 19 HOH HOH A . G 5 HOH 2 102 126 HOH HOH A . G 5 HOH 3 103 115 HOH HOH A . G 5 HOH 4 104 30 HOH HOH A . G 5 HOH 5 105 4 HOH HOH A . G 5 HOH 6 106 78 HOH HOH A . G 5 HOH 7 107 40 HOH HOH A . G 5 HOH 8 108 46 HOH HOH A . G 5 HOH 9 109 65 HOH HOH A . G 5 HOH 10 110 18 HOH HOH A . G 5 HOH 11 111 104 HOH HOH A . G 5 HOH 12 112 108 HOH HOH A . G 5 HOH 13 113 32 HOH HOH A . G 5 HOH 14 114 8 HOH HOH A . G 5 HOH 15 115 14 HOH HOH A . G 5 HOH 16 116 9 HOH HOH A . G 5 HOH 17 117 26 HOH HOH A . G 5 HOH 18 118 75 HOH HOH A . G 5 HOH 19 119 74 HOH HOH A . G 5 HOH 20 120 34 HOH HOH A . G 5 HOH 21 121 68 HOH HOH A . G 5 HOH 22 122 98 HOH HOH A . G 5 HOH 23 123 28 HOH HOH A . G 5 HOH 24 124 116 HOH HOH A . G 5 HOH 25 125 51 HOH HOH A . G 5 HOH 26 126 101 HOH HOH A . G 5 HOH 27 127 31 HOH HOH A . G 5 HOH 28 128 127 HOH HOH A . G 5 HOH 29 129 107 HOH HOH A . G 5 HOH 30 130 109 HOH HOH A . G 5 HOH 31 131 119 HOH HOH A . G 5 HOH 32 132 48 HOH HOH A . G 5 HOH 33 133 33 HOH HOH A . G 5 HOH 34 134 83 HOH HOH A . H 5 HOH 1 101 53 HOH HOH B . H 5 HOH 2 102 59 HOH HOH B . H 5 HOH 3 103 91 HOH HOH B . H 5 HOH 4 104 122 HOH HOH B . H 5 HOH 5 105 41 HOH HOH B . H 5 HOH 6 106 69 HOH HOH B . H 5 HOH 7 107 60 HOH HOH B . H 5 HOH 8 108 45 HOH HOH B . H 5 HOH 9 109 58 HOH HOH B . H 5 HOH 10 110 76 HOH HOH B . H 5 HOH 11 111 95 HOH HOH B . H 5 HOH 12 112 44 HOH HOH B . H 5 HOH 13 113 55 HOH HOH B . H 5 HOH 14 114 42 HOH HOH B . H 5 HOH 15 115 16 HOH HOH B . H 5 HOH 16 116 50 HOH HOH B . H 5 HOH 17 117 22 HOH HOH B . H 5 HOH 18 118 66 HOH HOH B . H 5 HOH 19 119 15 HOH HOH B . H 5 HOH 20 120 100 HOH HOH B . H 5 HOH 21 121 67 HOH HOH B . H 5 HOH 22 122 81 HOH HOH B . H 5 HOH 23 123 86 HOH HOH B . I 5 HOH 1 101 38 HOH HOH C . I 5 HOH 2 102 17 HOH HOH C . I 5 HOH 3 103 90 HOH HOH C . I 5 HOH 4 104 124 HOH HOH C . I 5 HOH 5 105 6 HOH HOH C . I 5 HOH 6 106 72 HOH HOH C . I 5 HOH 7 107 88 HOH HOH C . I 5 HOH 8 108 97 HOH HOH C . I 5 HOH 9 109 37 HOH HOH C . I 5 HOH 10 110 71 HOH HOH C . I 5 HOH 11 111 54 HOH HOH C . J 5 HOH 1 1101 89 HOH HOH D . J 5 HOH 2 1102 7 HOH HOH D . J 5 HOH 3 1103 56 HOH HOH D . J 5 HOH 4 1104 20 HOH HOH D . J 5 HOH 5 1105 13 HOH HOH D . J 5 HOH 6 1106 25 HOH HOH D . J 5 HOH 7 1107 2 HOH HOH D . J 5 HOH 8 1108 63 HOH HOH D . J 5 HOH 9 1109 73 HOH HOH D . J 5 HOH 10 1110 39 HOH HOH D . J 5 HOH 11 1111 99 HOH HOH D . J 5 HOH 12 1112 96 HOH HOH D . J 5 HOH 13 1113 24 HOH HOH D . J 5 HOH 14 1114 3 HOH HOH D . J 5 HOH 15 1115 64 HOH HOH D . J 5 HOH 16 1116 120 HOH HOH D . J 5 HOH 17 1117 29 HOH HOH D . J 5 HOH 18 1118 79 HOH HOH D . J 5 HOH 19 1119 52 HOH HOH D . J 5 HOH 20 1120 111 HOH HOH D . J 5 HOH 21 1121 49 HOH HOH D . J 5 HOH 22 1122 105 HOH HOH D . J 5 HOH 23 1123 84 HOH HOH D . J 5 HOH 24 1124 102 HOH HOH D . J 5 HOH 25 1125 110 HOH HOH D . K 5 HOH 1 101 125 HOH HOH E . K 5 HOH 2 102 82 HOH HOH E . K 5 HOH 3 103 103 HOH HOH E . K 5 HOH 4 104 47 HOH HOH E . K 5 HOH 5 105 94 HOH HOH E . K 5 HOH 6 106 85 HOH HOH E . K 5 HOH 7 107 5 HOH HOH E . K 5 HOH 8 108 21 HOH HOH E . K 5 HOH 9 109 11 HOH HOH E . K 5 HOH 10 110 27 HOH HOH E . K 5 HOH 11 111 62 HOH HOH E . K 5 HOH 12 112 23 HOH HOH E . K 5 HOH 13 113 57 HOH HOH E . K 5 HOH 14 114 61 HOH HOH E . K 5 HOH 15 115 12 HOH HOH E . K 5 HOH 16 116 36 HOH HOH E . K 5 HOH 17 117 10 HOH HOH E . K 5 HOH 18 118 92 HOH HOH E . K 5 HOH 19 119 70 HOH HOH E . K 5 HOH 20 120 118 HOH HOH E . K 5 HOH 21 121 80 HOH HOH E . K 5 HOH 22 122 35 HOH HOH E . K 5 HOH 23 123 112 HOH HOH E . K 5 HOH 24 124 113 HOH HOH E . K 5 HOH 25 125 43 HOH HOH E . K 5 HOH 26 126 117 HOH HOH E . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,J,K 2 1 B,H 3 1 C,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3850 ? 1 MORE -4 ? 1 'SSA (A^2)' 5500 ? 2 'ABSA (A^2)' 0 ? 2 MORE 0 ? 2 'SSA (A^2)' 3060 ? 3 'ABSA (A^2)' 0 ? 3 MORE 0 ? 3 'SSA (A^2)' 3010 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-21 2 'Structure model' 1 1 2018-04-18 3 'Structure model' 1 2 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_database_2.pdbx_DOI' 5 3 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.31 108.30 2.01 0.30 N 2 1 "O4'" E DA -4 ? ? "C1'" E DA -4 ? ? N9 E DA -4 ? ? 110.80 108.30 2.50 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A MET 1 ? CG ? A MET 5 CG 2 1 Y 1 A MET 1 ? SD ? A MET 5 SD 3 1 Y 1 A MET 1 ? CE ? A MET 5 CE 4 1 Y 1 B MET 1 ? CG ? B MET 5 CG 5 1 Y 1 B MET 1 ? SD ? B MET 5 SD 6 1 Y 1 B MET 1 ? CE ? B MET 5 CE 7 1 Y 1 B LYS 26 ? CG ? B LYS 30 CG 8 1 Y 1 B LYS 26 ? CD ? B LYS 30 CD 9 1 Y 1 B LYS 26 ? CE ? B LYS 30 CE 10 1 Y 1 B LYS 26 ? NZ ? B LYS 30 NZ 11 1 Y 1 C LYS 13 ? CG ? C LYS 17 CG 12 1 Y 1 C LYS 13 ? CD ? C LYS 17 CD 13 1 Y 1 C LYS 13 ? CE ? C LYS 17 CE 14 1 Y 1 C LYS 13 ? NZ ? C LYS 17 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A ALA -2 ? A ALA 2 3 1 Y 1 A MET -1 ? A MET 3 4 1 Y 1 A ASP 0 ? A ASP 4 5 1 Y 1 B GLY -3 ? B GLY 1 6 1 Y 1 B ALA -2 ? B ALA 2 7 1 Y 1 B MET -1 ? B MET 3 8 1 Y 1 B ASP 0 ? B ASP 4 9 1 Y 1 C GLY -3 ? C GLY 1 10 1 Y 1 C ALA -2 ? C ALA 2 11 1 Y 1 C MET -1 ? C MET 3 12 1 Y 1 C ASP 0 ? C ASP 4 13 1 Y 1 E DC -12 ? E DC 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6MA OP3 O N N 1 6MA P P N N 2 6MA OP1 O N N 3 6MA OP2 O N N 4 6MA "O5'" O N N 5 6MA "C5'" C N N 6 6MA "C4'" C N R 7 6MA "O4'" O N N 8 6MA "C3'" C N S 9 6MA "O3'" O N N 10 6MA "C2'" C N N 11 6MA "C1'" C N R 12 6MA N9 N Y N 13 6MA C8 C Y N 14 6MA N7 N Y N 15 6MA C5 C Y N 16 6MA C6 C Y N 17 6MA N1 N Y N 18 6MA C2 C Y N 19 6MA N3 N Y N 20 6MA C4 C Y N 21 6MA N6 N N N 22 6MA C1 C N N 23 6MA HOP3 H N N 24 6MA HOP2 H N N 25 6MA "H5'" H N N 26 6MA "H5''" H N N 27 6MA "H4'" H N N 28 6MA "H3'" H N N 29 6MA "HO3'" H N N 30 6MA "H2'" H N N 31 6MA "H2''" H N N 32 6MA "H1'" H N N 33 6MA H8 H N N 34 6MA H2 H N N 35 6MA H61 H N N 36 6MA H11 H N N 37 6MA H12 H N N 38 6MA H13 H N N 39 ALA N N N N 40 ALA CA C N S 41 ALA C C N N 42 ALA O O N N 43 ALA CB C N N 44 ALA OXT O N N 45 ALA H H N N 46 ALA H2 H N N 47 ALA HA H N N 48 ALA HB1 H N N 49 ALA HB2 H N N 50 ALA HB3 H N N 51 ALA HXT H N N 52 ARG N N N N 53 ARG CA C N S 54 ARG C C N N 55 ARG O O N N 56 ARG CB C N N 57 ARG CG C N N 58 ARG CD C N N 59 ARG NE N N N 60 ARG CZ C N N 61 ARG NH1 N N N 62 ARG NH2 N N N 63 ARG OXT O N N 64 ARG H H N N 65 ARG H2 H N N 66 ARG HA H N N 67 ARG HB2 H N N 68 ARG HB3 H N N 69 ARG HG2 H N N 70 ARG HG3 H N N 71 ARG HD2 H N N 72 ARG HD3 H N N 73 ARG HE H N N 74 ARG HH11 H N N 75 ARG HH12 H N N 76 ARG HH21 H N N 77 ARG HH22 H N N 78 ARG HXT H N N 79 ASN N N N N 80 ASN CA C N S 81 ASN C C N N 82 ASN O O N N 83 ASN CB C N N 84 ASN CG C N N 85 ASN OD1 O N N 86 ASN ND2 N N N 87 ASN OXT O N N 88 ASN H H N N 89 ASN H2 H N N 90 ASN HA H N N 91 ASN HB2 H N N 92 ASN HB3 H N N 93 ASN HD21 H N N 94 ASN HD22 H N N 95 ASN HXT H N N 96 ASP N N N N 97 ASP CA C N S 98 ASP C C N N 99 ASP O O N N 100 ASP CB C N N 101 ASP CG C N N 102 ASP OD1 O N N 103 ASP OD2 O N N 104 ASP OXT O N N 105 ASP H H N N 106 ASP H2 H N N 107 ASP HA H N N 108 ASP HB2 H N N 109 ASP HB3 H N N 110 ASP HD2 H N N 111 ASP HXT H N N 112 BU3 O6 O N N 113 BU3 C3 C N R 114 BU3 C4 C N N 115 BU3 C2 C N R 116 BU3 O5 O N N 117 BU3 C1 C N N 118 BU3 HO6 H N N 119 BU3 H3 H N N 120 BU3 H41 H N N 121 BU3 H42 H N N 122 BU3 H43 H N N 123 BU3 H2 H N N 124 BU3 HO5 H N N 125 BU3 H11 H N N 126 BU3 H12 H N N 127 BU3 H13 H N N 128 DA OP3 O N N 129 DA P P N N 130 DA OP1 O N N 131 DA OP2 O N N 132 DA "O5'" O N N 133 DA "C5'" C N N 134 DA "C4'" C N R 135 DA "O4'" O N N 136 DA "C3'" C N S 137 DA "O3'" O N N 138 DA "C2'" C N N 139 DA "C1'" C N R 140 DA N9 N Y N 141 DA C8 C Y N 142 DA N7 N Y N 143 DA C5 C Y N 144 DA C6 C Y N 145 DA N6 N N N 146 DA N1 N Y N 147 DA C2 C Y N 148 DA N3 N Y N 149 DA C4 C Y N 150 DA HOP3 H N N 151 DA HOP2 H N N 152 DA "H5'" H N N 153 DA "H5''" H N N 154 DA "H4'" H N N 155 DA "H3'" H N N 156 DA "HO3'" H N N 157 DA "H2'" H N N 158 DA "H2''" H N N 159 DA "H1'" H N N 160 DA H8 H N N 161 DA H61 H N N 162 DA H62 H N N 163 DA H2 H N N 164 DC OP3 O N N 165 DC P P N N 166 DC OP1 O N N 167 DC OP2 O N N 168 DC "O5'" O N N 169 DC "C5'" C N N 170 DC "C4'" C N R 171 DC "O4'" O N N 172 DC "C3'" C N S 173 DC "O3'" O N N 174 DC "C2'" C N N 175 DC "C1'" C N R 176 DC N1 N N N 177 DC C2 C N N 178 DC O2 O N N 179 DC N3 N N N 180 DC C4 C N N 181 DC N4 N N N 182 DC C5 C N N 183 DC C6 C N N 184 DC HOP3 H N N 185 DC HOP2 H N N 186 DC "H5'" H N N 187 DC "H5''" H N N 188 DC "H4'" H N N 189 DC "H3'" H N N 190 DC "HO3'" H N N 191 DC "H2'" H N N 192 DC "H2''" H N N 193 DC "H1'" H N N 194 DC H41 H N N 195 DC H42 H N N 196 DC H5 H N N 197 DC H6 H N N 198 DG OP3 O N N 199 DG P P N N 200 DG OP1 O N N 201 DG OP2 O N N 202 DG "O5'" O N N 203 DG "C5'" C N N 204 DG "C4'" C N R 205 DG "O4'" O N N 206 DG "C3'" C N S 207 DG "O3'" O N N 208 DG "C2'" C N N 209 DG "C1'" C N R 210 DG N9 N Y N 211 DG C8 C Y N 212 DG N7 N Y N 213 DG C5 C Y N 214 DG C6 C N N 215 DG O6 O N N 216 DG N1 N N N 217 DG C2 C N N 218 DG N2 N N N 219 DG N3 N N N 220 DG C4 C Y N 221 DG HOP3 H N N 222 DG HOP2 H N N 223 DG "H5'" H N N 224 DG "H5''" H N N 225 DG "H4'" H N N 226 DG "H3'" H N N 227 DG "HO3'" H N N 228 DG "H2'" H N N 229 DG "H2''" H N N 230 DG "H1'" H N N 231 DG H8 H N N 232 DG H1 H N N 233 DG H21 H N N 234 DG H22 H N N 235 DT OP3 O N N 236 DT P P N N 237 DT OP1 O N N 238 DT OP2 O N N 239 DT "O5'" O N N 240 DT "C5'" C N N 241 DT "C4'" C N R 242 DT "O4'" O N N 243 DT "C3'" C N S 244 DT "O3'" O N N 245 DT "C2'" C N N 246 DT "C1'" C N R 247 DT N1 N N N 248 DT C2 C N N 249 DT O2 O N N 250 DT N3 N N N 251 DT C4 C N N 252 DT O4 O N N 253 DT C5 C N N 254 DT C7 C N N 255 DT C6 C N N 256 DT HOP3 H N N 257 DT HOP2 H N N 258 DT "H5'" H N N 259 DT "H5''" H N N 260 DT "H4'" H N N 261 DT "H3'" H N N 262 DT "HO3'" H N N 263 DT "H2'" H N N 264 DT "H2''" H N N 265 DT "H1'" H N N 266 DT H3 H N N 267 DT H71 H N N 268 DT H72 H N N 269 DT H73 H N N 270 DT H6 H N N 271 GLN N N N N 272 GLN CA C N S 273 GLN C C N N 274 GLN O O N N 275 GLN CB C N N 276 GLN CG C N N 277 GLN CD C N N 278 GLN OE1 O N N 279 GLN NE2 N N N 280 GLN OXT O N N 281 GLN H H N N 282 GLN H2 H N N 283 GLN HA H N N 284 GLN HB2 H N N 285 GLN HB3 H N N 286 GLN HG2 H N N 287 GLN HG3 H N N 288 GLN HE21 H N N 289 GLN HE22 H N N 290 GLN HXT H N N 291 GLU N N N N 292 GLU CA C N S 293 GLU C C N N 294 GLU O O N N 295 GLU CB C N N 296 GLU CG C N N 297 GLU CD C N N 298 GLU OE1 O N N 299 GLU OE2 O N N 300 GLU OXT O N N 301 GLU H H N N 302 GLU H2 H N N 303 GLU HA H N N 304 GLU HB2 H N N 305 GLU HB3 H N N 306 GLU HG2 H N N 307 GLU HG3 H N N 308 GLU HE2 H N N 309 GLU HXT H N N 310 GLY N N N N 311 GLY CA C N N 312 GLY C C N N 313 GLY O O N N 314 GLY OXT O N N 315 GLY H H N N 316 GLY H2 H N N 317 GLY HA2 H N N 318 GLY HA3 H N N 319 GLY HXT H N N 320 HIS N N N N 321 HIS CA C N S 322 HIS C C N N 323 HIS O O N N 324 HIS CB C N N 325 HIS CG C Y N 326 HIS ND1 N Y N 327 HIS CD2 C Y N 328 HIS CE1 C Y N 329 HIS NE2 N Y N 330 HIS OXT O N N 331 HIS H H N N 332 HIS H2 H N N 333 HIS HA H N N 334 HIS HB2 H N N 335 HIS HB3 H N N 336 HIS HD1 H N N 337 HIS HD2 H N N 338 HIS HE1 H N N 339 HIS HE2 H N N 340 HIS HXT H N N 341 HOH O O N N 342 HOH H1 H N N 343 HOH H2 H N N 344 ILE N N N N 345 ILE CA C N S 346 ILE C C N N 347 ILE O O N N 348 ILE CB C N S 349 ILE CG1 C N N 350 ILE CG2 C N N 351 ILE CD1 C N N 352 ILE OXT O N N 353 ILE H H N N 354 ILE H2 H N N 355 ILE HA H N N 356 ILE HB H N N 357 ILE HG12 H N N 358 ILE HG13 H N N 359 ILE HG21 H N N 360 ILE HG22 H N N 361 ILE HG23 H N N 362 ILE HD11 H N N 363 ILE HD12 H N N 364 ILE HD13 H N N 365 ILE HXT H N N 366 LEU N N N N 367 LEU CA C N S 368 LEU C C N N 369 LEU O O N N 370 LEU CB C N N 371 LEU CG C N N 372 LEU CD1 C N N 373 LEU CD2 C N N 374 LEU OXT O N N 375 LEU H H N N 376 LEU H2 H N N 377 LEU HA H N N 378 LEU HB2 H N N 379 LEU HB3 H N N 380 LEU HG H N N 381 LEU HD11 H N N 382 LEU HD12 H N N 383 LEU HD13 H N N 384 LEU HD21 H N N 385 LEU HD22 H N N 386 LEU HD23 H N N 387 LEU HXT H N N 388 LYS N N N N 389 LYS CA C N S 390 LYS C C N N 391 LYS O O N N 392 LYS CB C N N 393 LYS CG C N N 394 LYS CD C N N 395 LYS CE C N N 396 LYS NZ N N N 397 LYS OXT O N N 398 LYS H H N N 399 LYS H2 H N N 400 LYS HA H N N 401 LYS HB2 H N N 402 LYS HB3 H N N 403 LYS HG2 H N N 404 LYS HG3 H N N 405 LYS HD2 H N N 406 LYS HD3 H N N 407 LYS HE2 H N N 408 LYS HE3 H N N 409 LYS HZ1 H N N 410 LYS HZ2 H N N 411 LYS HZ3 H N N 412 LYS HXT H N N 413 MET N N N N 414 MET CA C N S 415 MET C C N N 416 MET O O N N 417 MET CB C N N 418 MET CG C N N 419 MET SD S N N 420 MET CE C N N 421 MET OXT O N N 422 MET H H N N 423 MET H2 H N N 424 MET HA H N N 425 MET HB2 H N N 426 MET HB3 H N N 427 MET HG2 H N N 428 MET HG3 H N N 429 MET HE1 H N N 430 MET HE2 H N N 431 MET HE3 H N N 432 MET HXT H N N 433 SER N N N N 434 SER CA C N S 435 SER C C N N 436 SER O O N N 437 SER CB C N N 438 SER OG O N N 439 SER OXT O N N 440 SER H H N N 441 SER H2 H N N 442 SER HA H N N 443 SER HB2 H N N 444 SER HB3 H N N 445 SER HG H N N 446 SER HXT H N N 447 THR N N N N 448 THR CA C N S 449 THR C C N N 450 THR O O N N 451 THR CB C N R 452 THR OG1 O N N 453 THR CG2 C N N 454 THR OXT O N N 455 THR H H N N 456 THR H2 H N N 457 THR HA H N N 458 THR HB H N N 459 THR HG1 H N N 460 THR HG21 H N N 461 THR HG22 H N N 462 THR HG23 H N N 463 THR HXT H N N 464 TRP N N N N 465 TRP CA C N S 466 TRP C C N N 467 TRP O O N N 468 TRP CB C N N 469 TRP CG C Y N 470 TRP CD1 C Y N 471 TRP CD2 C Y N 472 TRP NE1 N Y N 473 TRP CE2 C Y N 474 TRP CE3 C Y N 475 TRP CZ2 C Y N 476 TRP CZ3 C Y N 477 TRP CH2 C Y N 478 TRP OXT O N N 479 TRP H H N N 480 TRP H2 H N N 481 TRP HA H N N 482 TRP HB2 H N N 483 TRP HB3 H N N 484 TRP HD1 H N N 485 TRP HE1 H N N 486 TRP HE3 H N N 487 TRP HZ2 H N N 488 TRP HZ3 H N N 489 TRP HH2 H N N 490 TRP HXT H N N 491 VAL N N N N 492 VAL CA C N S 493 VAL C C N N 494 VAL O O N N 495 VAL CB C N N 496 VAL CG1 C N N 497 VAL CG2 C N N 498 VAL OXT O N N 499 VAL H H N N 500 VAL H2 H N N 501 VAL HA H N N 502 VAL HB H N N 503 VAL HG11 H N N 504 VAL HG12 H N N 505 VAL HG13 H N N 506 VAL HG21 H N N 507 VAL HG22 H N N 508 VAL HG23 H N N 509 VAL HXT H N N 510 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6MA OP3 P sing N N 1 6MA OP3 HOP3 sing N N 2 6MA P OP1 doub N N 3 6MA P OP2 sing N N 4 6MA P "O5'" sing N N 5 6MA OP2 HOP2 sing N N 6 6MA "O5'" "C5'" sing N N 7 6MA "C5'" "C4'" sing N N 8 6MA "C5'" "H5'" sing N N 9 6MA "C5'" "H5''" sing N N 10 6MA "C4'" "O4'" sing N N 11 6MA "C4'" "C3'" sing N N 12 6MA "C4'" "H4'" sing N N 13 6MA "O4'" "C1'" sing N N 14 6MA "C3'" "O3'" sing N N 15 6MA "C3'" "C2'" sing N N 16 6MA "C3'" "H3'" sing N N 17 6MA "O3'" "HO3'" sing N N 18 6MA "C2'" "C1'" sing N N 19 6MA "C2'" "H2'" sing N N 20 6MA "C2'" "H2''" sing N N 21 6MA "C1'" N9 sing N N 22 6MA "C1'" "H1'" sing N N 23 6MA N9 C8 sing Y N 24 6MA N9 C4 sing Y N 25 6MA C8 N7 doub Y N 26 6MA C8 H8 sing N N 27 6MA N7 C5 sing Y N 28 6MA C5 C6 sing Y N 29 6MA C5 C4 doub Y N 30 6MA C6 N1 doub Y N 31 6MA C6 N6 sing N N 32 6MA N1 C2 sing Y N 33 6MA C2 N3 doub Y N 34 6MA C2 H2 sing N N 35 6MA N3 C4 sing Y N 36 6MA N6 C1 sing N N 37 6MA N6 H61 sing N N 38 6MA C1 H11 sing N N 39 6MA C1 H12 sing N N 40 6MA C1 H13 sing N N 41 ALA N CA sing N N 42 ALA N H sing N N 43 ALA N H2 sing N N 44 ALA CA C sing N N 45 ALA CA CB sing N N 46 ALA CA HA sing N N 47 ALA C O doub N N 48 ALA C OXT sing N N 49 ALA CB HB1 sing N N 50 ALA CB HB2 sing N N 51 ALA CB HB3 sing N N 52 ALA OXT HXT sing N N 53 ARG N CA sing N N 54 ARG N H sing N N 55 ARG N H2 sing N N 56 ARG CA C sing N N 57 ARG CA CB sing N N 58 ARG CA HA sing N N 59 ARG C O doub N N 60 ARG C OXT sing N N 61 ARG CB CG sing N N 62 ARG CB HB2 sing N N 63 ARG CB HB3 sing N N 64 ARG CG CD sing N N 65 ARG CG HG2 sing N N 66 ARG CG HG3 sing N N 67 ARG CD NE sing N N 68 ARG CD HD2 sing N N 69 ARG CD HD3 sing N N 70 ARG NE CZ sing N N 71 ARG NE HE sing N N 72 ARG CZ NH1 sing N N 73 ARG CZ NH2 doub N N 74 ARG NH1 HH11 sing N N 75 ARG NH1 HH12 sing N N 76 ARG NH2 HH21 sing N N 77 ARG NH2 HH22 sing N N 78 ARG OXT HXT sing N N 79 ASN N CA sing N N 80 ASN N H sing N N 81 ASN N H2 sing N N 82 ASN CA C sing N N 83 ASN CA CB sing N N 84 ASN CA HA sing N N 85 ASN C O doub N N 86 ASN C OXT sing N N 87 ASN CB CG sing N N 88 ASN CB HB2 sing N N 89 ASN CB HB3 sing N N 90 ASN CG OD1 doub N N 91 ASN CG ND2 sing N N 92 ASN ND2 HD21 sing N N 93 ASN ND2 HD22 sing N N 94 ASN OXT HXT sing N N 95 ASP N CA sing N N 96 ASP N H sing N N 97 ASP N H2 sing N N 98 ASP CA C sing N N 99 ASP CA CB sing N N 100 ASP CA HA sing N N 101 ASP C O doub N N 102 ASP C OXT sing N N 103 ASP CB CG sing N N 104 ASP CB HB2 sing N N 105 ASP CB HB3 sing N N 106 ASP CG OD1 doub N N 107 ASP CG OD2 sing N N 108 ASP OD2 HD2 sing N N 109 ASP OXT HXT sing N N 110 BU3 O6 C3 sing N N 111 BU3 O6 HO6 sing N N 112 BU3 C3 C4 sing N N 113 BU3 C3 C2 sing N N 114 BU3 C3 H3 sing N N 115 BU3 C4 H41 sing N N 116 BU3 C4 H42 sing N N 117 BU3 C4 H43 sing N N 118 BU3 C2 O5 sing N N 119 BU3 C2 C1 sing N N 120 BU3 C2 H2 sing N N 121 BU3 O5 HO5 sing N N 122 BU3 C1 H11 sing N N 123 BU3 C1 H12 sing N N 124 BU3 C1 H13 sing N N 125 DA OP3 P sing N N 126 DA OP3 HOP3 sing N N 127 DA P OP1 doub N N 128 DA P OP2 sing N N 129 DA P "O5'" sing N N 130 DA OP2 HOP2 sing N N 131 DA "O5'" "C5'" sing N N 132 DA "C5'" "C4'" sing N N 133 DA "C5'" "H5'" sing N N 134 DA "C5'" "H5''" sing N N 135 DA "C4'" "O4'" sing N N 136 DA "C4'" "C3'" sing N N 137 DA "C4'" "H4'" sing N N 138 DA "O4'" "C1'" sing N N 139 DA "C3'" "O3'" sing N N 140 DA "C3'" "C2'" sing N N 141 DA "C3'" "H3'" sing N N 142 DA "O3'" "HO3'" sing N N 143 DA "C2'" "C1'" sing N N 144 DA "C2'" "H2'" sing N N 145 DA "C2'" "H2''" sing N N 146 DA "C1'" N9 sing N N 147 DA "C1'" "H1'" sing N N 148 DA N9 C8 sing Y N 149 DA N9 C4 sing Y N 150 DA C8 N7 doub Y N 151 DA C8 H8 sing N N 152 DA N7 C5 sing Y N 153 DA C5 C6 sing Y N 154 DA C5 C4 doub Y N 155 DA C6 N6 sing N N 156 DA C6 N1 doub Y N 157 DA N6 H61 sing N N 158 DA N6 H62 sing N N 159 DA N1 C2 sing Y N 160 DA C2 N3 doub Y N 161 DA C2 H2 sing N N 162 DA N3 C4 sing Y N 163 DC OP3 P sing N N 164 DC OP3 HOP3 sing N N 165 DC P OP1 doub N N 166 DC P OP2 sing N N 167 DC P "O5'" sing N N 168 DC OP2 HOP2 sing N N 169 DC "O5'" "C5'" sing N N 170 DC "C5'" "C4'" sing N N 171 DC "C5'" "H5'" sing N N 172 DC "C5'" "H5''" sing N N 173 DC "C4'" "O4'" sing N N 174 DC "C4'" "C3'" sing N N 175 DC "C4'" "H4'" sing N N 176 DC "O4'" "C1'" sing N N 177 DC "C3'" "O3'" sing N N 178 DC "C3'" "C2'" sing N N 179 DC "C3'" "H3'" sing N N 180 DC "O3'" "HO3'" sing N N 181 DC "C2'" "C1'" sing N N 182 DC "C2'" "H2'" sing N N 183 DC "C2'" "H2''" sing N N 184 DC "C1'" N1 sing N N 185 DC "C1'" "H1'" sing N N 186 DC N1 C2 sing N N 187 DC N1 C6 sing N N 188 DC C2 O2 doub N N 189 DC C2 N3 sing N N 190 DC N3 C4 doub N N 191 DC C4 N4 sing N N 192 DC C4 C5 sing N N 193 DC N4 H41 sing N N 194 DC N4 H42 sing N N 195 DC C5 C6 doub N N 196 DC C5 H5 sing N N 197 DC C6 H6 sing N N 198 DG OP3 P sing N N 199 DG OP3 HOP3 sing N N 200 DG P OP1 doub N N 201 DG P OP2 sing N N 202 DG P "O5'" sing N N 203 DG OP2 HOP2 sing N N 204 DG "O5'" "C5'" sing N N 205 DG "C5'" "C4'" sing N N 206 DG "C5'" "H5'" sing N N 207 DG "C5'" "H5''" sing N N 208 DG "C4'" "O4'" sing N N 209 DG "C4'" "C3'" sing N N 210 DG "C4'" "H4'" sing N N 211 DG "O4'" "C1'" sing N N 212 DG "C3'" "O3'" sing N N 213 DG "C3'" "C2'" sing N N 214 DG "C3'" "H3'" sing N N 215 DG "O3'" "HO3'" sing N N 216 DG "C2'" "C1'" sing N N 217 DG "C2'" "H2'" sing N N 218 DG "C2'" "H2''" sing N N 219 DG "C1'" N9 sing N N 220 DG "C1'" "H1'" sing N N 221 DG N9 C8 sing Y N 222 DG N9 C4 sing Y N 223 DG C8 N7 doub Y N 224 DG C8 H8 sing N N 225 DG N7 C5 sing Y N 226 DG C5 C6 sing N N 227 DG C5 C4 doub Y N 228 DG C6 O6 doub N N 229 DG C6 N1 sing N N 230 DG N1 C2 sing N N 231 DG N1 H1 sing N N 232 DG C2 N2 sing N N 233 DG C2 N3 doub N N 234 DG N2 H21 sing N N 235 DG N2 H22 sing N N 236 DG N3 C4 sing N N 237 DT OP3 P sing N N 238 DT OP3 HOP3 sing N N 239 DT P OP1 doub N N 240 DT P OP2 sing N N 241 DT P "O5'" sing N N 242 DT OP2 HOP2 sing N N 243 DT "O5'" "C5'" sing N N 244 DT "C5'" "C4'" sing N N 245 DT "C5'" "H5'" sing N N 246 DT "C5'" "H5''" sing N N 247 DT "C4'" "O4'" sing N N 248 DT "C4'" "C3'" sing N N 249 DT "C4'" "H4'" sing N N 250 DT "O4'" "C1'" sing N N 251 DT "C3'" "O3'" sing N N 252 DT "C3'" "C2'" sing N N 253 DT "C3'" "H3'" sing N N 254 DT "O3'" "HO3'" sing N N 255 DT "C2'" "C1'" sing N N 256 DT "C2'" "H2'" sing N N 257 DT "C2'" "H2''" sing N N 258 DT "C1'" N1 sing N N 259 DT "C1'" "H1'" sing N N 260 DT N1 C2 sing N N 261 DT N1 C6 sing N N 262 DT C2 O2 doub N N 263 DT C2 N3 sing N N 264 DT N3 C4 sing N N 265 DT N3 H3 sing N N 266 DT C4 O4 doub N N 267 DT C4 C5 sing N N 268 DT C5 C7 sing N N 269 DT C5 C6 doub N N 270 DT C7 H71 sing N N 271 DT C7 H72 sing N N 272 DT C7 H73 sing N N 273 DT C6 H6 sing N N 274 GLN N CA sing N N 275 GLN N H sing N N 276 GLN N H2 sing N N 277 GLN CA C sing N N 278 GLN CA CB sing N N 279 GLN CA HA sing N N 280 GLN C O doub N N 281 GLN C OXT sing N N 282 GLN CB CG sing N N 283 GLN CB HB2 sing N N 284 GLN CB HB3 sing N N 285 GLN CG CD sing N N 286 GLN CG HG2 sing N N 287 GLN CG HG3 sing N N 288 GLN CD OE1 doub N N 289 GLN CD NE2 sing N N 290 GLN NE2 HE21 sing N N 291 GLN NE2 HE22 sing N N 292 GLN OXT HXT sing N N 293 GLU N CA sing N N 294 GLU N H sing N N 295 GLU N H2 sing N N 296 GLU CA C sing N N 297 GLU CA CB sing N N 298 GLU CA HA sing N N 299 GLU C O doub N N 300 GLU C OXT sing N N 301 GLU CB CG sing N N 302 GLU CB HB2 sing N N 303 GLU CB HB3 sing N N 304 GLU CG CD sing N N 305 GLU CG HG2 sing N N 306 GLU CG HG3 sing N N 307 GLU CD OE1 doub N N 308 GLU CD OE2 sing N N 309 GLU OE2 HE2 sing N N 310 GLU OXT HXT sing N N 311 GLY N CA sing N N 312 GLY N H sing N N 313 GLY N H2 sing N N 314 GLY CA C sing N N 315 GLY CA HA2 sing N N 316 GLY CA HA3 sing N N 317 GLY C O doub N N 318 GLY C OXT sing N N 319 GLY OXT HXT sing N N 320 HIS N CA sing N N 321 HIS N H sing N N 322 HIS N H2 sing N N 323 HIS CA C sing N N 324 HIS CA CB sing N N 325 HIS CA HA sing N N 326 HIS C O doub N N 327 HIS C OXT sing N N 328 HIS CB CG sing N N 329 HIS CB HB2 sing N N 330 HIS CB HB3 sing N N 331 HIS CG ND1 sing Y N 332 HIS CG CD2 doub Y N 333 HIS ND1 CE1 doub Y N 334 HIS ND1 HD1 sing N N 335 HIS CD2 NE2 sing Y N 336 HIS CD2 HD2 sing N N 337 HIS CE1 NE2 sing Y N 338 HIS CE1 HE1 sing N N 339 HIS NE2 HE2 sing N N 340 HIS OXT HXT sing N N 341 HOH O H1 sing N N 342 HOH O H2 sing N N 343 ILE N CA sing N N 344 ILE N H sing N N 345 ILE N H2 sing N N 346 ILE CA C sing N N 347 ILE CA CB sing N N 348 ILE CA HA sing N N 349 ILE C O doub N N 350 ILE C OXT sing N N 351 ILE CB CG1 sing N N 352 ILE CB CG2 sing N N 353 ILE CB HB sing N N 354 ILE CG1 CD1 sing N N 355 ILE CG1 HG12 sing N N 356 ILE CG1 HG13 sing N N 357 ILE CG2 HG21 sing N N 358 ILE CG2 HG22 sing N N 359 ILE CG2 HG23 sing N N 360 ILE CD1 HD11 sing N N 361 ILE CD1 HD12 sing N N 362 ILE CD1 HD13 sing N N 363 ILE OXT HXT sing N N 364 LEU N CA sing N N 365 LEU N H sing N N 366 LEU N H2 sing N N 367 LEU CA C sing N N 368 LEU CA CB sing N N 369 LEU CA HA sing N N 370 LEU C O doub N N 371 LEU C OXT sing N N 372 LEU CB CG sing N N 373 LEU CB HB2 sing N N 374 LEU CB HB3 sing N N 375 LEU CG CD1 sing N N 376 LEU CG CD2 sing N N 377 LEU CG HG sing N N 378 LEU CD1 HD11 sing N N 379 LEU CD1 HD12 sing N N 380 LEU CD1 HD13 sing N N 381 LEU CD2 HD21 sing N N 382 LEU CD2 HD22 sing N N 383 LEU CD2 HD23 sing N N 384 LEU OXT HXT sing N N 385 LYS N CA sing N N 386 LYS N H sing N N 387 LYS N H2 sing N N 388 LYS CA C sing N N 389 LYS CA CB sing N N 390 LYS CA HA sing N N 391 LYS C O doub N N 392 LYS C OXT sing N N 393 LYS CB CG sing N N 394 LYS CB HB2 sing N N 395 LYS CB HB3 sing N N 396 LYS CG CD sing N N 397 LYS CG HG2 sing N N 398 LYS CG HG3 sing N N 399 LYS CD CE sing N N 400 LYS CD HD2 sing N N 401 LYS CD HD3 sing N N 402 LYS CE NZ sing N N 403 LYS CE HE2 sing N N 404 LYS CE HE3 sing N N 405 LYS NZ HZ1 sing N N 406 LYS NZ HZ2 sing N N 407 LYS NZ HZ3 sing N N 408 LYS OXT HXT sing N N 409 MET N CA sing N N 410 MET N H sing N N 411 MET N H2 sing N N 412 MET CA C sing N N 413 MET CA CB sing N N 414 MET CA HA sing N N 415 MET C O doub N N 416 MET C OXT sing N N 417 MET CB CG sing N N 418 MET CB HB2 sing N N 419 MET CB HB3 sing N N 420 MET CG SD sing N N 421 MET CG HG2 sing N N 422 MET CG HG3 sing N N 423 MET SD CE sing N N 424 MET CE HE1 sing N N 425 MET CE HE2 sing N N 426 MET CE HE3 sing N N 427 MET OXT HXT sing N N 428 SER N CA sing N N 429 SER N H sing N N 430 SER N H2 sing N N 431 SER CA C sing N N 432 SER CA CB sing N N 433 SER CA HA sing N N 434 SER C O doub N N 435 SER C OXT sing N N 436 SER CB OG sing N N 437 SER CB HB2 sing N N 438 SER CB HB3 sing N N 439 SER OG HG sing N N 440 SER OXT HXT sing N N 441 THR N CA sing N N 442 THR N H sing N N 443 THR N H2 sing N N 444 THR CA C sing N N 445 THR CA CB sing N N 446 THR CA HA sing N N 447 THR C O doub N N 448 THR C OXT sing N N 449 THR CB OG1 sing N N 450 THR CB CG2 sing N N 451 THR CB HB sing N N 452 THR OG1 HG1 sing N N 453 THR CG2 HG21 sing N N 454 THR CG2 HG22 sing N N 455 THR CG2 HG23 sing N N 456 THR OXT HXT sing N N 457 TRP N CA sing N N 458 TRP N H sing N N 459 TRP N H2 sing N N 460 TRP CA C sing N N 461 TRP CA CB sing N N 462 TRP CA HA sing N N 463 TRP C O doub N N 464 TRP C OXT sing N N 465 TRP CB CG sing N N 466 TRP CB HB2 sing N N 467 TRP CB HB3 sing N N 468 TRP CG CD1 doub Y N 469 TRP CG CD2 sing Y N 470 TRP CD1 NE1 sing Y N 471 TRP CD1 HD1 sing N N 472 TRP CD2 CE2 doub Y N 473 TRP CD2 CE3 sing Y N 474 TRP NE1 CE2 sing Y N 475 TRP NE1 HE1 sing N N 476 TRP CE2 CZ2 sing Y N 477 TRP CE3 CZ3 doub Y N 478 TRP CE3 HE3 sing N N 479 TRP CZ2 CH2 doub Y N 480 TRP CZ2 HZ2 sing N N 481 TRP CZ3 CH2 sing Y N 482 TRP CZ3 HZ3 sing N N 483 TRP CH2 HH2 sing N N 484 TRP OXT HXT sing N N 485 VAL N CA sing N N 486 VAL N H sing N N 487 VAL N H2 sing N N 488 VAL CA C sing N N 489 VAL CA CB sing N N 490 VAL CA HA sing N N 491 VAL C O doub N N 492 VAL C OXT sing N N 493 VAL CB CG1 sing N N 494 VAL CB CG2 sing N N 495 VAL CB HB sing N N 496 VAL CG1 HG11 sing N N 497 VAL CG1 HG12 sing N N 498 VAL CG1 HG13 sing N N 499 VAL CG2 HG21 sing N N 500 VAL CG2 HG22 sing N N 501 VAL CG2 HG23 sing N N 502 VAL OXT HXT sing N N 503 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5YIW 'double helix' 5YIW 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 D DC 2 1_555 E DG 11 1_555 0.318 -0.305 -0.046 6.646 -13.670 0.289 1 D_DC2:DG-2_E D 2 ? E -2 ? 19 1 1 D DC 3 1_555 E DG 10 1_555 0.026 -0.314 0.229 -0.668 -14.868 -0.544 2 D_DC3:DG-3_E D 3 ? E -3 ? 19 1 1 D DT 4 1_555 E DA 9 1_555 -0.031 -0.262 0.040 -6.028 -9.914 7.560 3 D_DT4:DA-4_E D 4 ? E -4 ? 20 1 1 D DG 5 1_555 E DC 8 1_555 -0.242 -0.179 -0.231 0.610 -1.927 -0.162 4 D_DG5:DC-5_E D 5 ? E -5 ? 19 1 1 D 6MA 6 1_555 E DT 7 1_555 -0.017 -0.083 -0.023 -3.597 -9.868 1.864 5 D_6MA6:DT-6_E D 6 ? E -6 ? 20 1 1 D DT 7 1_555 E DA 6 1_555 -0.134 -0.123 0.045 -4.311 -12.570 1.678 6 D_DT7:DA-7_E D 7 ? E -7 ? 20 1 1 D DT 8 1_555 E 6MA 5 1_555 -0.030 -0.106 0.346 -8.677 -9.367 -0.115 7 D_DT8:6MA-8_E D 8 ? E -8 ? 20 1 1 D DC 9 1_555 E DG 4 1_555 0.280 -0.156 -0.018 -0.117 7.044 -0.204 8 D_DC9:DG-9_E D 9 ? E -9 ? 19 1 1 D DG 10 1_555 E DC 3 1_555 -0.215 -0.125 0.379 13.849 -12.222 -0.972 9 D_DG10:DC-10_E D 10 ? E -10 ? 19 1 1 D DC 11 1_555 E DG 2 1_555 0.246 -0.133 0.128 -0.821 -13.809 1.208 10 D_DC11:DG-11_E D 11 ? E -11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 D DC 2 1_555 E DG 11 1_555 D DC 3 1_555 E DG 10 1_555 1.232 -1.909 3.328 1.549 7.168 32.986 -4.407 -1.878 2.914 12.432 -2.687 33.770 1 DD_DC2DC3:DG-3DG-2_EE D 2 ? E -2 ? D 3 ? E -3 ? 1 D DC 3 1_555 E DG 10 1_555 D DT 4 1_555 E DA 9 1_555 -0.827 -1.382 3.384 2.437 6.980 26.730 -4.523 2.298 2.853 14.744 -5.147 27.716 2 DD_DC3DT4:DA-4DG-3_EE D 3 ? E -3 ? D 4 ? E -4 ? 1 D DT 4 1_555 E DA 9 1_555 D DG 5 1_555 E DC 8 1_555 -0.648 -0.402 3.196 1.931 13.872 26.837 -3.434 1.614 2.624 27.628 -3.846 30.212 3 DD_DT4DG5:DC-5DA-4_EE D 4 ? E -4 ? D 5 ? E -5 ? 1 D DG 5 1_555 E DC 8 1_555 D 6MA 6 1_555 E DT 7 1_555 -0.340 -0.715 3.370 -2.597 2.930 40.500 -1.362 0.195 3.327 4.220 3.741 40.680 4 DD_DG56MA6:DT-6DC-5_EE D 5 ? E -5 ? D 6 ? E -6 ? 1 D 6MA 6 1_555 E DT 7 1_555 D DT 7 1_555 E DA 6 1_555 -0.404 -0.421 3.269 0.102 -1.701 30.012 -0.462 0.799 3.286 -3.282 -0.196 30.059 5 DD_6MA6DT7:DA-7DT-6_EE D 6 ? E -6 ? D 7 ? E -7 ? 1 D DT 7 1_555 E DA 6 1_555 D DT 8 1_555 E 6MA 5 1_555 -0.549 0.542 3.712 -0.416 6.823 32.755 -0.358 0.875 3.752 11.936 0.728 33.441 6 DD_DT7DT8:6MA-8DA-7_EE D 7 ? E -7 ? D 8 ? E -8 ? 1 D DT 8 1_555 E 6MA 5 1_555 D DC 9 1_555 E DG 4 1_555 1.368 1.514 3.374 4.035 0.531 37.044 2.296 -1.575 3.519 0.833 -6.328 37.259 7 DD_DT8DC9:DG-96MA-8_EE D 8 ? E -8 ? D 9 ? E -9 ? 1 D DC 9 1_555 E DG 4 1_555 D DG 10 1_555 E DC 3 1_555 -0.899 1.171 3.173 -5.083 0.023 33.515 2.006 0.733 3.271 0.040 8.752 33.887 8 DD_DC9DG10:DC-10DG-9_EE D 9 ? E -9 ? D 10 ? E -10 ? 1 D DG 10 1_555 E DC 3 1_555 D DC 11 1_555 E DG 2 1_555 0.450 -0.825 3.657 1.727 -0.139 35.089 -1.343 -0.456 3.677 -0.230 -2.863 35.130 9 DD_DG10DC11:DG-11DC-10_EE D 10 ? E -10 ? D 11 ? E -11 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31670067 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 6MA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 6MA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(R,R)-2,3-BUTANEDIOL' BU3 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5YIU _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #