HEADER DNA BINDING PROTEIN 06-OCT-17 5YIX TITLE CAULOBACTER CRESCENTUS GCRA SIGMA-INTERACTING DOMAIN (SID) IN COMPLEX TITLE 2 WITH DOMAIN 2 OF SIGMA 70 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPOD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 2; COMPND 5 SYNONYM: SIGMA-70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CELL CYCLE REGULATORY PROTEIN GCRA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SIGMA-INTERACTING DOMAIN (SID); COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS (STRAIN NA1000 / CB15N); SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 STRAIN: NA1000 / CB15N; SOURCE 5 GENE: RPOD, CCNA_03142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 12 ORGANISM_TAXID: 565050; SOURCE 13 STRAIN: NA1000 / CB15N; SOURCE 14 GENE: GCRA, CCNA_02328; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CAULOBACTER CRESCENTUS, GCRA, SIGMA-INTERACTING DOMAIN, TRANSCRIPTION KEYWDS 2 FACTOR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WU,Y.ZHANG REVDAT 3 27-MAR-24 5YIX 1 REMARK REVDAT 2 18-APR-18 5YIX 1 JRNL REVDAT 1 21-MAR-18 5YIX 0 JRNL AUTH X.WU,D.L.HAAKONSEN,A.G.SANDERLIN,Y.J.LIU,L.SHEN,N.ZHUANG, JRNL AUTH 2 M.T.LAUB,Y.ZHANG JRNL TITL STRUCTURAL INSIGHTS INTO THE UNIQUE MECHANISM OF JRNL TITL 2 TRANSCRIPTION ACTIVATION BY CAULOBACTER CRESCENTUS GCRA. JRNL REF NUCLEIC ACIDS RES. V. 46 3245 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29514271 JRNL DOI 10.1093/NAR/GKY161 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 23395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0671 - 4.6017 1.00 3079 175 0.2097 0.2435 REMARK 3 2 4.6017 - 3.6533 1.00 2860 145 0.1884 0.2141 REMARK 3 3 3.6533 - 3.1917 1.00 2799 159 0.2147 0.2265 REMARK 3 4 3.1917 - 2.9000 1.00 2791 132 0.2409 0.2985 REMARK 3 5 2.9000 - 2.6922 1.00 2722 143 0.2445 0.3033 REMARK 3 6 2.6922 - 2.5335 1.00 2737 148 0.2517 0.3185 REMARK 3 7 2.5335 - 2.4066 1.00 2715 129 0.2665 0.2805 REMARK 3 8 2.4066 - 2.3019 0.93 2529 132 0.2811 0.3507 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2931 REMARK 3 ANGLE : 0.947 3944 REMARK 3 CHIRALITY : 0.034 447 REMARK 3 PLANARITY : 0.004 505 REMARK 3 DIHEDRAL : 14.906 1080 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YIX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 295.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23503 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : 0.75000 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.1M SODIUM CITRATE, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 265.28933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 132.64467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.96700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.32233 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 331.61167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 265.28933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 132.64467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.32233 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 198.96700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 331.61167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 620 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 GLU A 199 REMARK 465 ASP A 200 REMARK 465 ASP A 201 REMARK 465 GLU A 202 REMARK 465 GLY A 203 REMARK 465 PRO A 204 REMARK 465 ALA A 205 REMARK 465 GLU A 206 REMARK 465 PRO A 207 REMARK 465 VAL A 208 REMARK 465 ASP A 209 REMARK 465 ASP A 210 REMARK 465 GLU A 211 REMARK 465 ALA A 212 REMARK 465 GLY A 213 REMARK 465 GLU A 214 REMARK 465 ALA A 215 REMARK 465 LYS A 216 REMARK 465 ALA A 217 REMARK 465 GLU A 218 REMARK 465 GLY A 219 REMARK 465 ALA A 220 REMARK 465 GLU A 221 REMARK 465 GLY A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 GLU A 225 REMARK 465 ASP A 226 REMARK 465 ASP A 227 REMARK 465 PHE A 228 REMARK 465 ASP A 229 REMARK 465 ASP A 230 REMARK 465 ALA A 484 REMARK 465 ASP A 485 REMARK 465 GLN A 486 REMARK 465 ALA A 487 REMARK 465 GLY B 84 REMARK 465 ALA B 85 REMARK 465 MET B 86 REMARK 465 ASP B 87 REMARK 465 VAL B 88 REMARK 465 PRO B 89 REMARK 465 VAL B 90 REMARK 465 ALA B 91 REMARK 465 ALA B 92 REMARK 465 ALA B 93 REMARK 465 PRO B 94 REMARK 465 ALA B 95 REMARK 465 PRO B 96 REMARK 465 LEU B 97 REMARK 465 PRO B 98 REMARK 465 ALA B 99 REMARK 465 PHE B 100 REMARK 465 ARG B 101 REMARK 465 HIS B 102 REMARK 465 GLU B 103 REMARK 465 GLU B 104 REMARK 465 PRO B 153 REMARK 465 GLN B 154 REMARK 465 GLN B 155 REMARK 465 THR B 156 REMARK 465 LYS B 157 REMARK 465 LYS B 158 REMARK 465 LYS B 159 REMARK 465 SER B 160 REMARK 465 GLY B 161 REMARK 465 GLY B 162 REMARK 465 ALA B 163 REMARK 465 GLU B 164 REMARK 465 LEU B 165 REMARK 465 ALA B 166 REMARK 465 ARG B 167 REMARK 465 SER B 168 REMARK 465 LEU B 169 REMARK 465 ARG B 170 REMARK 465 ARG B 171 REMARK 465 TYR B 172 REMARK 465 ILE B 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 128 CG CD1 CD2 REMARK 470 ARG A 262 CD NE CZ NH1 NH2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 ASP A 280 CG OD1 OD2 REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 GLU A 312 CD OE1 OE2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 145 O HOH B 301 2.07 REMARK 500 O HOH A 716 O HOH A 739 2.08 REMARK 500 NZ LYS A 458 O HOH A 601 2.09 REMARK 500 O ALA A 198 O HOH A 602 2.10 REMARK 500 O HOH A 644 O HOH A 746 2.13 REMARK 500 O HOH A 730 O HOH A 743 2.14 REMARK 500 O GLN B 152 O HOH B 302 2.16 REMARK 500 NH2 ARG A 339 O HOH A 603 2.16 REMARK 500 O LEU A 351 O HOH A 604 2.17 REMARK 500 OD1 ASP A 146 O HOH A 605 2.18 REMARK 500 NH1 ARG A 320 O HOH A 606 2.19 REMARK 500 NH1 ARG A 463 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 116 17.98 58.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 754 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 9.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 118 SG REMARK 620 2 CYS B 133 SG 105.4 REMARK 620 3 CYS B 143 SG 110.4 128.4 REMARK 620 4 HIS B 146 ND1 104.1 104.5 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 DBREF1 5YIX A 128 487 UNP A0A0H3CAV3_CAUCN DBREF2 5YIX A A0A0H3CAV3 127 486 DBREF1 5YIX B 88 173 UNP A0A0H3C9J4_CAUCN DBREF2 5YIX B A0A0H3C9J4 88 173 SEQADV 5YIX GLY A 127 UNP A0A0H3CAV EXPRESSION TAG SEQADV 5YIX GLY B 84 UNP A0A0H3C9J EXPRESSION TAG SEQADV 5YIX ALA B 85 UNP A0A0H3C9J EXPRESSION TAG SEQADV 5YIX MET B 86 UNP A0A0H3C9J EXPRESSION TAG SEQADV 5YIX ASP B 87 UNP A0A0H3C9J EXPRESSION TAG SEQRES 1 A 361 GLY LEU LEU SER ARG GLU GLY GLU ILE ALA ILE ALA LYS SEQRES 2 A 361 ARG ILE GLU ALA GLY ARG ASP THR MET ILE ARG GLY LEU SEQRES 3 A 361 CYS GLU SER ALA LEU THR PHE GLU ALA ILE MET VAL TRP SEQRES 4 A 361 ARG GLU GLU LEU GLY THR GLY ARG ILE LEU LEU ARG GLU SEQRES 5 A 361 VAL ILE ASP LEU GLU GLY THR TYR ALA ALA ILE ASN GLY SEQRES 6 A 361 VAL ALA ALA GLN PRO ALA ALA GLU ASP ASP GLU GLY PRO SEQRES 7 A 361 ALA GLU PRO VAL ASP ASP GLU ALA GLY GLU ALA LYS ALA SEQRES 8 A 361 GLU GLY ALA GLU GLY GLU ASP GLU ASP ASP PHE ASP ASP SEQRES 9 A 361 GLY ALA GLY PRO THR VAL SER ALA MET GLU GLY GLU LEU SEQRES 10 A 361 ARG GLU GLY VAL MET ALA ILE LEU ASP ALA ILE ALA SER SEQRES 11 A 361 GLU PHE GLU ALA PHE ARG LYS LEU GLN ASP LYS LEU VAL SEQRES 12 A 361 GLY SER ARG LEU LYS GLY GLU ASP LEU SER ASP ALA ASP SEQRES 13 A 361 ARG LYS ALA TYR GLU GLY LEU SER ALA THR ILE ILE GLN SEQRES 14 A 361 HIS LEU LYS THR LEU LYS LEU ASN ASN ASN ARG ILE GLU SEQRES 15 A 361 ALA LEU VAL GLU GLN LEU TYR ALA ILE ASN LYS ARG LEU SEQRES 16 A 361 ILE GLY LEU GLU GLY ARG LEU LEU ARG LEU ALA ASP SER SEQRES 17 A 361 TYR GLY ILE SER ARG GLY GLU PHE LEU LYS ALA TYR PHE SEQRES 18 A 361 GLY SER GLU LEU ASN PRO THR TRP SER GLU GLN VAL LYS SEQRES 19 A 361 ALA MET GLY VAL ARG TRP THR LYS PHE VAL GLU ASN ASP SEQRES 20 A 361 SER GLN SER VAL THR ASP ILE ARG SER GLU ILE ALA ALA SEQRES 21 A 361 LEU ALA THR GLU THR GLY VAL PRO ILE ASP ASP TYR ARG SEQRES 22 A 361 ARG ILE VAL GLN THR VAL GLN LYS GLY GLU ARG GLU ALA SEQRES 23 A 361 ARG GLN ALA LYS LYS GLU MET VAL GLU ALA ASN LEU ARG SEQRES 24 A 361 LEU VAL ILE SER ILE ALA LYS LYS TYR THR ASN ARG GLY SEQRES 25 A 361 LEU GLN PHE LEU ASP LEU ILE GLN GLU GLY ASN ILE GLY SEQRES 26 A 361 LEU MET LYS ALA VAL ASP LYS PHE GLU TYR ARG ARG GLY SEQRES 27 A 361 TYR LYS PHE SER THR TYR ALA THR TRP TRP ILE ARG GLN SEQRES 28 A 361 ALA ILE THR ARG SER ILE ALA ASP GLN ALA SEQRES 1 B 90 GLY ALA MET ASP VAL PRO VAL ALA ALA ALA PRO ALA PRO SEQRES 2 B 90 LEU PRO ALA PHE ARG HIS GLU GLU PRO GLY SER ALA THR SEQRES 3 B 90 VAL LEU THR LEU GLY ALA HIS MET CYS LYS TRP PRO ILE SEQRES 4 B 90 GLY ASP PRO SER SER GLU GLY PHE THR PHE CYS GLY ARG SEQRES 5 B 90 ARG SER SER GLU GLY PRO TYR CYS VAL GLU HIS ALA ARG SEQRES 6 B 90 VAL ALA TYR GLN PRO GLN GLN THR LYS LYS LYS SER GLY SEQRES 7 B 90 GLY ALA GLU LEU ALA ARG SER LEU ARG ARG TYR ILE HET BU3 A 501 6 HET BU3 B 201 6 HET ZN B 202 1 HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM ZN ZINC ION FORMUL 3 BU3 2(C4 H10 O2) FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *182(H2 O) HELIX 1 AA1 SER A 130 CYS A 153 1 24 HELIX 2 AA2 SER A 155 THR A 171 1 17 HELIX 3 AA3 LEU A 175 ILE A 180 1 6 HELIX 4 AA4 ASP A 181 GLY A 191 1 11 HELIX 5 AA5 THR A 235 GLY A 275 1 41 HELIX 6 AA6 SER A 279 LYS A 301 1 23 HELIX 7 AA7 ASN A 303 TYR A 335 1 33 HELIX 8 AA8 SER A 338 PHE A 347 1 10 HELIX 9 AA9 THR A 354 ALA A 361 1 8 HELIX 10 AB1 GLY A 363 ASP A 373 1 11 HELIX 11 AB2 ASP A 373 GLY A 392 1 20 HELIX 12 AB3 PRO A 394 ASN A 423 1 30 HELIX 13 AB4 ASN A 423 LYS A 432 1 10 HELIX 14 AB5 LYS A 433 THR A 435 5 3 HELIX 15 AB6 GLN A 440 PHE A 459 1 20 HELIX 16 AB7 GLU A 460 GLY A 464 5 5 HELIX 17 AB8 LYS A 466 ILE A 483 1 18 HELIX 18 AB9 CYS B 143 TYR B 151 1 9 SHEET 1 AA1 2 PRO B 121 ILE B 122 0 SHEET 2 AA1 2 THR B 131 PHE B 132 -1 O THR B 131 N ILE B 122 LINK SG CYS B 118 ZN ZN B 202 1555 1555 2.34 LINK SG CYS B 133 ZN ZN B 202 1555 1555 2.24 LINK SG CYS B 143 ZN ZN B 202 1555 1555 2.34 LINK ND1 HIS B 146 ZN ZN B 202 1555 1555 2.07 SITE 1 AC1 1 ALA A 198 SITE 1 AC2 5 LYS A 139 ASP A 252 TRP B 120 PRO B 121 SITE 2 AC2 5 HOH B 314 SITE 1 AC3 4 CYS B 118 CYS B 133 CYS B 143 HIS B 146 CRYST1 65.199 65.199 397.934 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015338 0.008855 0.000000 0.00000 SCALE2 0.000000 0.017710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002513 0.00000