HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-OCT-17 5YLT TITLE CRYSTAL STRUCTURE OF SET7/9 IN COMPLEX WITH A CYPROHEPTADINE TITLE 2 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE H3-K4 METHYLTRANSFERASE SETD7,H3-K4-HMTASE SETD7, COMPND 5 LYSINE N-METHYLTRANSFERASE 7,SET DOMAIN-CONTAINING PROTEIN 7,SET7/9; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD7, KIAA1717, KMT7, SET7, SET9; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PX100709-08 KEYWDS SET DOMAIN, METHYLTRANSFERASE, INHIBITOR, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.HIRANO,T.FUJIWARA,H.NIWA,M.HIRANO,K.OHIRA,Y.OKAZAKI,S.SATO, AUTHOR 2 T.UMEHARA,Y.MAEMOTO,A.ITO,M.YOSHIDA,H.KAGECHIKA REVDAT 4 16-OCT-24 5YLT 1 REMARK REVDAT 3 22-NOV-23 5YLT 1 REMARK REVDAT 2 05-SEP-18 5YLT 1 JRNL REVDAT 1 20-JUN-18 5YLT 0 JRNL AUTH T.HIRANO,T.FUJIWARA,H.NIWA,M.HIRANO,K.OHIRA,Y.OKAZAKI, JRNL AUTH 2 S.SATO,T.UMEHARA,Y.MAEMOTO,A.ITO,M.YOSHIDA,H.KAGECHIKA JRNL TITL DEVELOPMENT OF NOVEL INHIBITORS FOR HISTONE JRNL TITL 2 METHYLTRANSFERASE SET7/9 BASED ON CYPROHEPTADINE. JRNL REF CHEMMEDCHEM V. 13 1530 2018 JRNL REFN ESSN 1860-7187 JRNL PMID 29882380 JRNL DOI 10.1002/CMDC.201800233 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7861 - 4.8040 1.00 2345 108 0.1702 0.1789 REMARK 3 2 4.8040 - 3.8138 1.00 2308 166 0.1301 0.1770 REMARK 3 3 3.8138 - 3.3320 1.00 2311 157 0.1409 0.1808 REMARK 3 4 3.3320 - 3.0274 1.00 2342 127 0.1519 0.2276 REMARK 3 5 3.0274 - 2.8105 1.00 2346 134 0.1573 0.1657 REMARK 3 6 2.8105 - 2.6448 1.00 2306 148 0.1672 0.2062 REMARK 3 7 2.6448 - 2.5123 1.00 2284 161 0.1666 0.1684 REMARK 3 8 2.5123 - 2.4030 1.00 2361 131 0.1680 0.1998 REMARK 3 9 2.4030 - 2.3105 1.00 2281 150 0.1582 0.1808 REMARK 3 10 2.3105 - 2.2308 1.00 2346 133 0.1596 0.2044 REMARK 3 11 2.2308 - 2.1610 1.00 2299 170 0.1576 0.1806 REMARK 3 12 2.1610 - 2.0992 1.00 2304 175 0.1633 0.1804 REMARK 3 13 2.0992 - 2.0440 1.00 2296 144 0.1704 0.1958 REMARK 3 14 2.0440 - 1.9941 1.00 2291 166 0.1918 0.2716 REMARK 3 15 1.9941 - 1.9488 0.99 2274 146 0.1941 0.2304 REMARK 3 16 1.9488 - 1.9073 1.00 2369 131 0.2043 0.2451 REMARK 3 17 1.9073 - 1.8692 1.00 2309 143 0.2010 0.2310 REMARK 3 18 1.8692 - 1.8339 0.99 2287 124 0.2067 0.2352 REMARK 3 19 1.8339 - 1.8011 0.99 2415 105 0.2142 0.2406 REMARK 3 20 1.8011 - 1.7706 0.99 2294 147 0.2385 0.2496 REMARK 3 21 1.7706 - 1.7420 0.99 2281 129 0.2656 0.2951 REMARK 3 22 1.7420 - 1.7152 0.99 2302 158 0.2678 0.2708 REMARK 3 23 1.7152 - 1.6900 0.98 2301 135 0.2968 0.3464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2079 REMARK 3 ANGLE : 0.885 2834 REMARK 3 CHIRALITY : 0.060 299 REMARK 3 PLANARITY : 0.005 364 REMARK 3 DIHEDRAL : 16.486 1228 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1616 7.7197 -15.7994 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1767 REMARK 3 T33: 0.2136 T12: -0.0336 REMARK 3 T13: -0.0304 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 5.5668 L22: 3.0777 REMARK 3 L33: 2.4307 L12: 0.1946 REMARK 3 L13: 0.1744 L23: 0.1071 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: 0.0183 S13: -0.1555 REMARK 3 S21: 0.0439 S22: 0.1362 S23: -0.6061 REMARK 3 S31: -0.1059 S32: 0.3831 S33: -0.0222 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1781 11.1204 -25.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.4502 T22: 0.6299 REMARK 3 T33: 0.6501 T12: -0.1338 REMARK 3 T13: 0.1110 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 4.6974 L22: 7.0824 REMARK 3 L33: 3.2949 L12: -5.3077 REMARK 3 L13: 1.8253 L23: -1.3742 REMARK 3 S TENSOR REMARK 3 S11: -0.2561 S12: 1.0794 S13: -0.1712 REMARK 3 S21: -0.6422 S22: -0.2645 S23: -0.6403 REMARK 3 S31: 0.0059 S32: 0.5433 S33: 0.3414 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5690 3.2780 -17.7545 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1321 REMARK 3 T33: 0.0924 T12: -0.0099 REMARK 3 T13: 0.0116 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 2.3059 L22: 2.8538 REMARK 3 L33: 1.6652 L12: -0.1904 REMARK 3 L13: 0.1789 L23: 0.4749 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.2150 S13: -0.0299 REMARK 3 S21: 0.2424 S22: -0.0294 S23: 0.2933 REMARK 3 S31: 0.0771 S32: -0.1792 S33: 0.0222 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.28400 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AYF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 34% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.08800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.48150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.08800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.48150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 552 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 104 REMARK 465 SER A 105 REMARK 465 SER A 106 REMARK 465 GLY A 107 REMARK 465 SER A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 LYS A 111 REMARK 465 ASP A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 GLY A 346 REMARK 465 PRO A 347 REMARK 465 GLU A 348 REMARK 465 GLN A 365 REMARK 465 LYS A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 687 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 152 -46.94 -141.18 REMARK 500 ASP A 194 50.84 -154.27 REMARK 500 THR A 197 -168.24 -119.73 REMARK 500 SER A 202 144.24 -175.68 REMARK 500 TYR A 245 79.72 -111.40 REMARK 500 THR A 300 60.67 -118.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C7N A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 DBREF 5YLT A 111 366 UNP Q8WTS6 SETD7_HUMAN 111 366 SEQADV 5YLT GLY A 104 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT SER A 105 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT SER A 106 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT GLY A 107 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT SER A 108 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT SER A 109 UNP Q8WTS6 EXPRESSION TAG SEQADV 5YLT GLY A 110 UNP Q8WTS6 EXPRESSION TAG SEQRES 1 A 263 GLY SER SER GLY SER SER GLY LYS ASP ASN ILE ARG HIS SEQRES 2 A 263 GLY VAL CYS TRP ILE TYR TYR PRO ASP GLY GLY SER LEU SEQRES 3 A 263 VAL GLY GLU VAL ASN GLU ASP GLY GLU MET THR GLY GLU SEQRES 4 A 263 LYS ILE ALA TYR VAL TYR PRO ASP GLU ARG THR ALA LEU SEQRES 5 A 263 TYR GLY LYS PHE ILE ASP GLY GLU MET ILE GLU GLY LYS SEQRES 6 A 263 LEU ALA THR LEU MET SER THR GLU GLU GLY ARG PRO HIS SEQRES 7 A 263 PHE GLU LEU MET PRO GLY ASN SER VAL TYR HIS PHE ASP SEQRES 8 A 263 LYS SER THR SER SER CYS ILE SER THR ASN ALA LEU LEU SEQRES 9 A 263 PRO ASP PRO TYR GLU SER GLU ARG VAL TYR VAL ALA GLU SEQRES 10 A 263 SER LEU ILE SER SER ALA GLY GLU GLY LEU PHE SER LYS SEQRES 11 A 263 VAL ALA VAL GLY PRO ASN THR VAL MET SER PHE TYR ASN SEQRES 12 A 263 GLY VAL ARG ILE THR HIS GLN GLU VAL ASP SER ARG ASP SEQRES 13 A 263 TRP ALA LEU ASN GLY ASN THR LEU SER LEU ASP GLU GLU SEQRES 14 A 263 THR VAL ILE ASP VAL PRO GLU PRO TYR ASN HIS VAL SER SEQRES 15 A 263 LYS TYR CYS ALA SER LEU GLY HIS LYS ALA ASN HIS SER SEQRES 16 A 263 PHE THR PRO ASN CYS ILE TYR ASP MET PHE VAL HIS PRO SEQRES 17 A 263 ARG PHE GLY PRO ILE LYS CYS ILE ARG THR LEU ARG ALA SEQRES 18 A 263 VAL GLU ALA ASP GLU GLU LEU THR VAL ALA TYR GLY TYR SEQRES 19 A 263 ASP HIS SER PRO PRO GLY LYS SER GLY PRO GLU ALA PRO SEQRES 20 A 263 GLU TRP TYR GLN VAL GLU LEU LYS ALA PHE GLN ALA THR SEQRES 21 A 263 GLN GLN LYS HET SFG A 401 27 HET C7N A 402 23 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HETNAM SFG SINEFUNGIN HETNAM C7N 2-(1-METHYLPIPERIDIN-4-YLIDENE)TRICYCLO[9.4.0.0^{3, HETNAM 2 C7N 8}]PENTADECA-1(11),3(8),4,6,9,12,14-HEPTAEN-6-OL HETNAM GOL GLYCEROL HETSYN SFG ADENOSYL-ORNITHINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SFG C15 H23 N7 O5 FORMUL 3 C7N C21 H21 N O FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *197(H2 O) HELIX 1 AA1 ASP A 209 ARG A 215 1 7 HELIX 2 AA2 THR A 251 SER A 257 1 7 HELIX 3 AA3 ASP A 259 ASN A 263 5 5 HELIX 4 AA4 LEU A 291 ALA A 295 5 5 HELIX 5 AA5 PRO A 350 THR A 363 1 14 SHEET 1 AA1 6 VAL A 118 TYR A 122 0 SHEET 2 AA1 6 SER A 128 GLU A 132 -1 O LEU A 129 N ILE A 121 SHEET 3 AA1 6 GLY A 141 VAL A 147 -1 O VAL A 147 N SER A 128 SHEET 4 AA1 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 AA1 6 GLU A 163 GLU A 176 -1 O ILE A 165 N LYS A 158 SHEET 6 AA1 6 ARG A 179 LEU A 184 -1 O HIS A 181 N SER A 174 SHEET 1 AA2 6 VAL A 118 TYR A 122 0 SHEET 2 AA2 6 SER A 128 GLU A 132 -1 O LEU A 129 N ILE A 121 SHEET 3 AA2 6 GLY A 141 VAL A 147 -1 O VAL A 147 N SER A 128 SHEET 4 AA2 6 THR A 153 ILE A 160 -1 O GLY A 157 N ILE A 144 SHEET 5 AA2 6 GLU A 163 GLU A 176 -1 O ILE A 165 N LYS A 158 SHEET 6 AA2 6 VAL A 190 TYR A 191 -1 O TYR A 191 N GLY A 167 SHEET 1 AA3 4 VAL A 216 GLU A 220 0 SHEET 2 AA3 4 GLU A 228 SER A 232 -1 O GLY A 229 N ALA A 219 SHEET 3 AA3 4 GLU A 330 VAL A 333 -1 O LEU A 331 N LEU A 230 SHEET 4 AA3 4 ASN A 296 HIS A 297 1 N ASN A 296 O VAL A 333 SHEET 1 AA4 3 VAL A 241 TYR A 245 0 SHEET 2 AA4 3 GLY A 314 THR A 321 -1 O ILE A 319 N MET A 242 SHEET 3 AA4 3 CYS A 303 HIS A 310 -1 N ASP A 306 O CYS A 318 SHEET 1 AA5 3 VAL A 248 ILE A 250 0 SHEET 2 AA5 3 VAL A 274 ASP A 276 -1 O VAL A 274 N ILE A 250 SHEET 3 AA5 3 LEU A 267 SER A 268 -1 N LEU A 267 O ILE A 275 SSBOND 1 CYS A 119 CYS A 119 1555 2555 2.04 CISPEP 1 GLU A 279 PRO A 280 0 4.16 SITE 1 AC1 20 ILE A 223 ALA A 226 GLU A 228 GLY A 264 SITE 2 AC1 20 ASN A 265 HIS A 293 LYS A 294 ASN A 296 SITE 3 AC1 20 HIS A 297 TYR A 335 TRP A 352 GLU A 356 SITE 4 AC1 20 GLN A 364 HOH A 512 HOH A 547 HOH A 557 SITE 5 AC1 20 HOH A 559 HOH A 564 HOH A 566 HOH A 598 SITE 1 AC2 13 TRP A 260 ASN A 263 GLY A 264 THR A 266 SITE 2 AC2 13 TYR A 305 TYR A 335 GLY A 336 TYR A 337 SITE 3 AC2 13 ASP A 338 PRO A 341 PRO A 342 TYR A 353 SITE 4 AC2 13 HOH A 503 SITE 1 AC3 6 ALA A 261 LEU A 262 ASN A 263 GLY A 264 SITE 2 AC3 6 ASN A 265 VAL A 277 SITE 1 AC4 6 TYR A 217 VAL A 218 ALA A 235 GLU A 326 SITE 2 AC4 6 GOL A 405 HOH A 516 SITE 1 AC5 4 VAL A 218 ALA A 219 GOL A 404 HOH A 520 CRYST1 110.176 34.963 67.872 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009076 0.000000 0.000000 0.00000 SCALE2 0.000000 0.028602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014734 0.00000