data_5YM8 # _entry.id 5YM8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YM8 pdb_00005ym8 10.2210/pdb5ym8/pdb WWPDB D_1300005546 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-06-13 2 'Structure model' 1 1 2019-07-03 3 'Structure model' 1 2 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_database_2.pdbx_DOI' 12 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YM8 _pdbx_database_status.recvd_initial_deposition_date 2017-10-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zeng, Z.' 1 ? 'Peng, G.Q.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Virol. _citation.journal_id_ASTM JOVIAM _citation.journal_id_CSD 0825 _citation.journal_id_ISSN 1098-5514 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 92 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Dimerization of Coronavirus nsp9 with Diverse Modes Enhances Its Nucleic Acid Binding Affinity.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1128/JVI.00692-18 _citation.pdbx_database_id_PubMed 29925659 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zeng, Z.' 1 ? primary 'Deng, F.' 2 ? primary 'Shi, K.' 3 ? primary 'Ye, G.' 4 ? primary 'Wang, G.' 5 ? primary 'Fang, L.' 6 0000-0003-1406-6409 primary 'Xiao, S.' 7 0000-0003-0023-9188 primary 'Fu, Z.' 8 ? primary 'Peng, G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man nsp9 12068.708 2 ? ? ? ? 2 water nat water 18.015 70 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PEDV main protease' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NVFTAQNTAQDFNGNESTVKSFYVTRTGKKILVAITSTKDNLKTVTCLTETGKTVLNLDPPMRFAHTVGGKQSVVYLYFI QNISSLNRGMVIGHISETTILQHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;NVFTAQNTAQDFNGNESTVKSFYVTRTGKKILVAITSTKDNLKTVTCLTETGKTVLNLDPPMRFAHTVGGKQSVVYLYFI QNISSLNRGMVIGHISETTILQHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 VAL n 1 3 PHE n 1 4 THR n 1 5 ALA n 1 6 GLN n 1 7 ASN n 1 8 THR n 1 9 ALA n 1 10 GLN n 1 11 ASP n 1 12 PHE n 1 13 ASN n 1 14 GLY n 1 15 ASN n 1 16 GLU n 1 17 SER n 1 18 THR n 1 19 VAL n 1 20 LYS n 1 21 SER n 1 22 PHE n 1 23 TYR n 1 24 VAL n 1 25 THR n 1 26 ARG n 1 27 THR n 1 28 GLY n 1 29 LYS n 1 30 LYS n 1 31 ILE n 1 32 LEU n 1 33 VAL n 1 34 ALA n 1 35 ILE n 1 36 THR n 1 37 SER n 1 38 THR n 1 39 LYS n 1 40 ASP n 1 41 ASN n 1 42 LEU n 1 43 LYS n 1 44 THR n 1 45 VAL n 1 46 THR n 1 47 CYS n 1 48 LEU n 1 49 THR n 1 50 GLU n 1 51 THR n 1 52 GLY n 1 53 LYS n 1 54 THR n 1 55 VAL n 1 56 LEU n 1 57 ASN n 1 58 LEU n 1 59 ASP n 1 60 PRO n 1 61 PRO n 1 62 MET n 1 63 ARG n 1 64 PHE n 1 65 ALA n 1 66 HIS n 1 67 THR n 1 68 VAL n 1 69 GLY n 1 70 GLY n 1 71 LYS n 1 72 GLN n 1 73 SER n 1 74 VAL n 1 75 VAL n 1 76 TYR n 1 77 LEU n 1 78 TYR n 1 79 PHE n 1 80 ILE n 1 81 GLN n 1 82 ASN n 1 83 ILE n 1 84 SER n 1 85 SER n 1 86 LEU n 1 87 ASN n 1 88 ARG n 1 89 GLY n 1 90 MET n 1 91 VAL n 1 92 ILE n 1 93 GLY n 1 94 HIS n 1 95 ILE n 1 96 SER n 1 97 GLU n 1 98 THR n 1 99 THR n 1 100 ILE n 1 101 LEU n 1 102 GLN n 1 103 HIS n 1 104 HIS n 1 105 HIS n 1 106 HIS n 1 107 HIS n 1 108 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 108 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene orf1ab _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porcine coronavirus HKU15' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1159905 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 8 8 ASN ASN A . n A 1 2 VAL 2 9 9 VAL VAL A . n A 1 3 PHE 3 10 10 PHE PHE A . n A 1 4 THR 4 11 11 THR THR A . n A 1 5 ALA 5 12 12 ALA ALA A . n A 1 6 GLN 6 13 13 GLN GLN A . n A 1 7 ASN 7 14 14 ASN ASN A . n A 1 8 THR 8 15 15 THR THR A . n A 1 9 ALA 9 16 16 ALA ALA A . n A 1 10 GLN 10 17 17 GLN GLN A . n A 1 11 ASP 11 18 18 ASP ASP A . n A 1 12 PHE 12 19 19 PHE PHE A . n A 1 13 ASN 13 20 20 ASN ASN A . n A 1 14 GLY 14 21 21 GLY GLY A . n A 1 15 ASN 15 22 22 ASN ASN A . n A 1 16 GLU 16 23 23 GLU GLU A . n A 1 17 SER 17 24 24 SER SER A . n A 1 18 THR 18 25 25 THR THR A . n A 1 19 VAL 19 26 26 VAL VAL A . n A 1 20 LYS 20 27 27 LYS LYS A . n A 1 21 SER 21 28 28 SER SER A . n A 1 22 PHE 22 29 29 PHE PHE A . n A 1 23 TYR 23 30 30 TYR TYR A . n A 1 24 VAL 24 31 31 VAL VAL A . n A 1 25 THR 25 32 32 THR THR A . n A 1 26 ARG 26 33 33 ARG ARG A . n A 1 27 THR 27 34 34 THR ALA A . n A 1 28 GLY 28 35 35 GLY GLY A . n A 1 29 LYS 29 36 36 LYS ALA A . n A 1 30 LYS 30 37 37 LYS ALA A . n A 1 31 ILE 31 38 38 ILE ILE A . n A 1 32 LEU 32 39 39 LEU LEU A . n A 1 33 VAL 33 40 40 VAL VAL A . n A 1 34 ALA 34 41 41 ALA ALA A . n A 1 35 ILE 35 42 42 ILE ILE A . n A 1 36 THR 36 43 43 THR THR A . n A 1 37 SER 37 44 44 SER SER A . n A 1 38 THR 38 45 45 THR THR A . n A 1 39 LYS 39 46 46 LYS LYS A . n A 1 40 ASP 40 47 47 ASP ASP A . n A 1 41 ASN 41 48 48 ASN ASN A . n A 1 42 LEU 42 49 49 LEU LEU A . n A 1 43 LYS 43 50 50 LYS LYS A . n A 1 44 THR 44 51 51 THR THR A . n A 1 45 VAL 45 52 52 VAL VAL A . n A 1 46 THR 46 53 53 THR THR A . n A 1 47 CYS 47 54 54 CYS CYS A . n A 1 48 LEU 48 55 55 LEU LEU A . n A 1 49 THR 49 56 56 THR ALA A . n A 1 50 GLU 50 57 ? ? ? A . n A 1 51 THR 51 58 58 THR THR A . n A 1 52 GLY 52 59 59 GLY GLY A . n A 1 53 LYS 53 60 60 LYS LYS A . n A 1 54 THR 54 61 61 THR THR A . n A 1 55 VAL 55 62 62 VAL VAL A . n A 1 56 LEU 56 63 63 LEU LEU A . n A 1 57 ASN 57 64 64 ASN ASN A . n A 1 58 LEU 58 65 65 LEU LEU A . n A 1 59 ASP 59 66 66 ASP ASP A . n A 1 60 PRO 60 67 67 PRO PRO A . n A 1 61 PRO 61 68 68 PRO PRO A . n A 1 62 MET 62 69 69 MET MET A . n A 1 63 ARG 63 70 70 ARG ARG A . n A 1 64 PHE 64 71 71 PHE PHE A . n A 1 65 ALA 65 72 72 ALA ALA A . n A 1 66 HIS 66 73 ? ? ? A . n A 1 67 THR 67 74 ? ? ? A . n A 1 68 VAL 68 75 ? ? ? A . n A 1 69 GLY 69 76 ? ? ? A . n A 1 70 GLY 70 77 ? ? ? A . n A 1 71 LYS 71 78 ? ? ? A . n A 1 72 GLN 72 79 ? ? ? A . n A 1 73 SER 73 80 80 SER SER A . n A 1 74 VAL 74 81 81 VAL VAL A . n A 1 75 VAL 75 82 82 VAL VAL A . n A 1 76 TYR 76 83 83 TYR TYR A . n A 1 77 LEU 77 84 84 LEU LEU A . n A 1 78 TYR 78 85 85 TYR TYR A . n A 1 79 PHE 79 86 86 PHE PHE A . n A 1 80 ILE 80 87 87 ILE ILE A . n A 1 81 GLN 81 88 88 GLN GLN A . n A 1 82 ASN 82 89 89 ASN ASN A . n A 1 83 ILE 83 90 90 ILE ILE A . n A 1 84 SER 84 91 91 SER SER A . n A 1 85 SER 85 92 92 SER SER A . n A 1 86 LEU 86 93 93 LEU LEU A . n A 1 87 ASN 87 94 94 ASN ASN A . n A 1 88 ARG 88 95 95 ARG ARG A . n A 1 89 GLY 89 96 96 GLY GLY A . n A 1 90 MET 90 97 97 MET MET A . n A 1 91 VAL 91 98 98 VAL VAL A . n A 1 92 ILE 92 99 99 ILE ILE A . n A 1 93 GLY 93 100 100 GLY GLY A . n A 1 94 HIS 94 101 101 HIS HIS A . n A 1 95 ILE 95 102 102 ILE ILE A . n A 1 96 SER 96 103 103 SER SER A . n A 1 97 GLU 97 104 104 GLU GLU A . n A 1 98 THR 98 105 105 THR ALA A . n A 1 99 THR 99 106 ? ? ? A . n A 1 100 ILE 100 107 ? ? ? A . n A 1 101 LEU 101 108 ? ? ? A . n A 1 102 GLN 102 109 ? ? ? A . n A 1 103 HIS 103 110 ? ? ? A . n A 1 104 HIS 104 111 ? ? ? A . n A 1 105 HIS 105 112 ? ? ? A . n A 1 106 HIS 106 113 ? ? ? A . n A 1 107 HIS 107 114 ? ? ? A . n A 1 108 HIS 108 115 ? ? ? A . n B 1 1 ASN 1 8 8 ASN ASN B . n B 1 2 VAL 2 9 9 VAL VAL B . n B 1 3 PHE 3 10 10 PHE PHE B . n B 1 4 THR 4 11 11 THR THR B . n B 1 5 ALA 5 12 12 ALA ALA B . n B 1 6 GLN 6 13 13 GLN GLN B . n B 1 7 ASN 7 14 14 ASN ASN B . n B 1 8 THR 8 15 15 THR THR B . n B 1 9 ALA 9 16 16 ALA ALA B . n B 1 10 GLN 10 17 17 GLN GLN B . n B 1 11 ASP 11 18 18 ASP ASP B . n B 1 12 PHE 12 19 19 PHE PHE B . n B 1 13 ASN 13 20 20 ASN ASN B . n B 1 14 GLY 14 21 21 GLY GLY B . n B 1 15 ASN 15 22 22 ASN ASN B . n B 1 16 GLU 16 23 23 GLU GLU B . n B 1 17 SER 17 24 24 SER SER B . n B 1 18 THR 18 25 25 THR THR B . n B 1 19 VAL 19 26 26 VAL VAL B . n B 1 20 LYS 20 27 27 LYS LYS B . n B 1 21 SER 21 28 28 SER SER B . n B 1 22 PHE 22 29 29 PHE PHE B . n B 1 23 TYR 23 30 30 TYR TYR B . n B 1 24 VAL 24 31 31 VAL VAL B . n B 1 25 THR 25 32 32 THR THR B . n B 1 26 ARG 26 33 33 ARG ALA B . n B 1 27 THR 27 34 34 THR ALA B . n B 1 28 GLY 28 35 35 GLY GLY B . n B 1 29 LYS 29 36 36 LYS ALA B . n B 1 30 LYS 30 37 37 LYS LYS B . n B 1 31 ILE 31 38 38 ILE ILE B . n B 1 32 LEU 32 39 39 LEU LEU B . n B 1 33 VAL 33 40 40 VAL VAL B . n B 1 34 ALA 34 41 41 ALA ALA B . n B 1 35 ILE 35 42 42 ILE ILE B . n B 1 36 THR 36 43 43 THR THR B . n B 1 37 SER 37 44 44 SER SER B . n B 1 38 THR 38 45 45 THR THR B . n B 1 39 LYS 39 46 46 LYS LYS B . n B 1 40 ASP 40 47 47 ASP ASP B . n B 1 41 ASN 41 48 48 ASN ASN B . n B 1 42 LEU 42 49 49 LEU LEU B . n B 1 43 LYS 43 50 50 LYS LYS B . n B 1 44 THR 44 51 51 THR THR B . n B 1 45 VAL 45 52 52 VAL VAL B . n B 1 46 THR 46 53 53 THR THR B . n B 1 47 CYS 47 54 54 CYS CYS B . n B 1 48 LEU 48 55 55 LEU LEU B . n B 1 49 THR 49 56 56 THR ALA B . n B 1 50 GLU 50 57 ? ? ? B . n B 1 51 THR 51 58 58 THR THR B . n B 1 52 GLY 52 59 59 GLY GLY B . n B 1 53 LYS 53 60 60 LYS LYS B . n B 1 54 THR 54 61 61 THR THR B . n B 1 55 VAL 55 62 62 VAL VAL B . n B 1 56 LEU 56 63 63 LEU LEU B . n B 1 57 ASN 57 64 64 ASN ASN B . n B 1 58 LEU 58 65 65 LEU LEU B . n B 1 59 ASP 59 66 66 ASP ASP B . n B 1 60 PRO 60 67 67 PRO PRO B . n B 1 61 PRO 61 68 68 PRO PRO B . n B 1 62 MET 62 69 69 MET MET B . n B 1 63 ARG 63 70 70 ARG ARG B . n B 1 64 PHE 64 71 71 PHE PHE B . n B 1 65 ALA 65 72 72 ALA ALA B . n B 1 66 HIS 66 73 73 HIS HIS B . n B 1 67 THR 67 74 74 THR THR B . n B 1 68 VAL 68 75 75 VAL VAL B . n B 1 69 GLY 69 76 76 GLY GLY B . n B 1 70 GLY 70 77 77 GLY GLY B . n B 1 71 LYS 71 78 78 LYS LYS B . n B 1 72 GLN 72 79 79 GLN GLN B . n B 1 73 SER 73 80 80 SER SER B . n B 1 74 VAL 74 81 81 VAL VAL B . n B 1 75 VAL 75 82 82 VAL VAL B . n B 1 76 TYR 76 83 83 TYR TYR B . n B 1 77 LEU 77 84 84 LEU LEU B . n B 1 78 TYR 78 85 85 TYR TYR B . n B 1 79 PHE 79 86 86 PHE PHE B . n B 1 80 ILE 80 87 87 ILE ILE B . n B 1 81 GLN 81 88 88 GLN GLN B . n B 1 82 ASN 82 89 89 ASN ASN B . n B 1 83 ILE 83 90 90 ILE ILE B . n B 1 84 SER 84 91 91 SER SER B . n B 1 85 SER 85 92 92 SER SER B . n B 1 86 LEU 86 93 93 LEU LEU B . n B 1 87 ASN 87 94 94 ASN ASN B . n B 1 88 ARG 88 95 95 ARG ARG B . n B 1 89 GLY 89 96 96 GLY GLY B . n B 1 90 MET 90 97 97 MET MET B . n B 1 91 VAL 91 98 98 VAL VAL B . n B 1 92 ILE 92 99 99 ILE ILE B . n B 1 93 GLY 93 100 100 GLY GLY B . n B 1 94 HIS 94 101 101 HIS HIS B . n B 1 95 ILE 95 102 102 ILE ILE B . n B 1 96 SER 96 103 103 SER SER B . n B 1 97 GLU 97 104 104 GLU GLU B . n B 1 98 THR 98 105 105 THR ALA B . n B 1 99 THR 99 106 106 THR ALA B . n B 1 100 ILE 100 107 107 ILE ALA B . n B 1 101 LEU 101 108 ? ? ? B . n B 1 102 GLN 102 109 ? ? ? B . n B 1 103 HIS 103 110 ? ? ? B . n B 1 104 HIS 104 111 ? ? ? B . n B 1 105 HIS 105 112 ? ? ? B . n B 1 106 HIS 106 113 ? ? ? B . n B 1 107 HIS 107 114 ? ? ? B . n B 1 108 HIS 108 115 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 201 141 HOH HOH A . C 2 HOH 2 202 150 HOH HOH A . C 2 HOH 3 203 119 HOH HOH A . C 2 HOH 4 204 143 HOH HOH A . C 2 HOH 5 205 148 HOH HOH A . C 2 HOH 6 206 118 HOH HOH A . C 2 HOH 7 207 120 HOH HOH A . C 2 HOH 8 208 142 HOH HOH A . C 2 HOH 9 209 132 HOH HOH A . C 2 HOH 10 210 121 HOH HOH A . C 2 HOH 11 211 128 HOH HOH A . C 2 HOH 12 212 123 HOH HOH A . C 2 HOH 13 213 125 HOH HOH A . C 2 HOH 14 214 116 HOH HOH A . C 2 HOH 15 215 139 HOH HOH A . C 2 HOH 16 216 137 HOH HOH A . C 2 HOH 17 217 133 HOH HOH A . C 2 HOH 18 218 144 HOH HOH A . C 2 HOH 19 219 135 HOH HOH A . C 2 HOH 20 220 127 HOH HOH A . C 2 HOH 21 221 122 HOH HOH A . C 2 HOH 22 222 147 HOH HOH A . C 2 HOH 23 223 134 HOH HOH A . C 2 HOH 24 224 146 HOH HOH A . C 2 HOH 25 225 117 HOH HOH A . C 2 HOH 26 226 114 HOH HOH A . C 2 HOH 27 227 138 HOH HOH A . D 2 HOH 1 201 117 HOH HOH B . D 2 HOH 2 202 111 HOH HOH B . D 2 HOH 3 203 137 HOH HOH B . D 2 HOH 4 204 127 HOH HOH B . D 2 HOH 5 205 130 HOH HOH B . D 2 HOH 6 206 126 HOH HOH B . D 2 HOH 7 207 136 HOH HOH B . D 2 HOH 8 208 149 HOH HOH B . D 2 HOH 9 209 131 HOH HOH B . D 2 HOH 10 210 112 HOH HOH B . D 2 HOH 11 211 115 HOH HOH B . D 2 HOH 12 212 134 HOH HOH B . D 2 HOH 13 213 122 HOH HOH B . D 2 HOH 14 214 114 HOH HOH B . D 2 HOH 15 215 139 HOH HOH B . D 2 HOH 16 216 120 HOH HOH B . D 2 HOH 17 217 129 HOH HOH B . D 2 HOH 18 218 140 HOH HOH B . D 2 HOH 19 219 112 HOH HOH B . D 2 HOH 20 220 123 HOH HOH B . D 2 HOH 21 221 136 HOH HOH B . D 2 HOH 22 222 125 HOH HOH B . D 2 HOH 23 223 113 HOH HOH B . D 2 HOH 24 224 124 HOH HOH B . D 2 HOH 25 225 128 HOH HOH B . D 2 HOH 26 226 129 HOH HOH B . D 2 HOH 27 227 118 HOH HOH B . D 2 HOH 28 228 140 HOH HOH B . D 2 HOH 29 229 113 HOH HOH B . D 2 HOH 30 230 124 HOH HOH B . D 2 HOH 31 231 115 HOH HOH B . D 2 HOH 32 232 133 HOH HOH B . D 2 HOH 33 233 131 HOH HOH B . D 2 HOH 34 234 141 HOH HOH B . D 2 HOH 35 235 145 HOH HOH B . D 2 HOH 36 236 116 HOH HOH B . D 2 HOH 37 237 119 HOH HOH B . D 2 HOH 38 238 135 HOH HOH B . D 2 HOH 39 239 121 HOH HOH B . D 2 HOH 40 240 130 HOH HOH B . D 2 HOH 41 241 132 HOH HOH B . D 2 HOH 42 242 138 HOH HOH B . D 2 HOH 43 243 126 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A THR 34 ? OG1 ? A THR 27 OG1 2 1 Y 1 A THR 34 ? CG2 ? A THR 27 CG2 3 1 Y 1 A LYS 36 ? CG ? A LYS 29 CG 4 1 Y 1 A LYS 36 ? CD ? A LYS 29 CD 5 1 Y 1 A LYS 36 ? CE ? A LYS 29 CE 6 1 Y 1 A LYS 36 ? NZ ? A LYS 29 NZ 7 1 Y 1 A LYS 37 ? CG ? A LYS 30 CG 8 1 Y 1 A LYS 37 ? CD ? A LYS 30 CD 9 1 Y 1 A LYS 37 ? CE ? A LYS 30 CE 10 1 Y 1 A LYS 37 ? NZ ? A LYS 30 NZ 11 1 Y 1 A THR 56 ? OG1 ? A THR 49 OG1 12 1 Y 1 A THR 56 ? CG2 ? A THR 49 CG2 13 1 Y 1 A THR 105 ? OG1 ? A THR 98 OG1 14 1 Y 1 A THR 105 ? CG2 ? A THR 98 CG2 15 1 Y 1 B ARG 33 ? CG ? B ARG 26 CG 16 1 Y 1 B ARG 33 ? CD ? B ARG 26 CD 17 1 Y 1 B ARG 33 ? NE ? B ARG 26 NE 18 1 Y 1 B ARG 33 ? CZ ? B ARG 26 CZ 19 1 Y 1 B ARG 33 ? NH1 ? B ARG 26 NH1 20 1 Y 1 B ARG 33 ? NH2 ? B ARG 26 NH2 21 1 Y 1 B THR 34 ? OG1 ? B THR 27 OG1 22 1 Y 1 B THR 34 ? CG2 ? B THR 27 CG2 23 1 Y 1 B LYS 36 ? CG ? B LYS 29 CG 24 1 Y 1 B LYS 36 ? CD ? B LYS 29 CD 25 1 Y 1 B LYS 36 ? CE ? B LYS 29 CE 26 1 Y 1 B LYS 36 ? NZ ? B LYS 29 NZ 27 1 Y 1 B THR 56 ? OG1 ? B THR 49 OG1 28 1 Y 1 B THR 56 ? CG2 ? B THR 49 CG2 29 1 Y 1 B THR 105 ? OG1 ? B THR 98 OG1 30 1 Y 1 B THR 105 ? CG2 ? B THR 98 CG2 31 1 Y 1 B THR 106 ? OG1 ? B THR 99 OG1 32 1 Y 1 B THR 106 ? CG2 ? B THR 99 CG2 33 1 Y 1 B ILE 107 ? CG1 ? B ILE 100 CG1 34 1 Y 1 B ILE 107 ? CG2 ? B ILE 100 CG2 35 1 Y 1 B ILE 107 ? CD1 ? B ILE 100 CD1 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 106.08 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5YM8 _cell.details ? _cell.formula_units_Z ? _cell.length_a 31.546 _cell.length_a_esd ? _cell.length_b 83.863 _cell.length_b_esd ? _cell.length_c 36.344 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YM8 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 35.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na2HPO4:citric acid (pH 4.2), 22% (w/v) PEG 8000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-06-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97917 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97917 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5YM8 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.99 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 605729 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 24.51 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5YM8 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.992 _refine.ls_d_res_low 34.921 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12364 _refine.ls_number_reflns_R_free 611 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.30 _refine.ls_percent_reflns_R_free 4.94 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2161 _refine.ls_R_factor_R_free 0.2476 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2145 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.28 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.23 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1424 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1494 _refine_hist.d_res_high 1.992 _refine_hist.d_res_low 34.921 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 ? 1485 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.070 ? 2019 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.390 ? 521 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.047 ? 252 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 254 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.9924 2.1929 . . 166 2884 99.00 . . . 0.2659 . 0.2037 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1929 2.5101 . . 136 2940 99.00 . . . 0.2250 . 0.2113 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5101 3.1622 . . 151 2968 100.00 . . . 0.2773 . 0.2247 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1622 34.9267 . . 158 2961 99.00 . . . 0.2345 . 0.2136 . . . . . . . . . . # _struct.entry_id 5YM8 _struct.title 'Crystal Structure of porcine delta coronavirus nsp9-N7' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YM8 _struct_keywords.text 'Porcine delta coronavirus, RNA binding protein, nsp9' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code X2G6C4_9NIDO _struct_ref.pdbx_db_accession X2G6C4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NVFTAQNTAQDFNGNESTVKSFYVTRTGKKILVAITSTKDNLKTVTCLTETGKTVLNLDPPMRFAHTVGGKQSVVYLYFI QNISSLNRGMVIGHISETTILQ ; _struct_ref.pdbx_align_begin 3385 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YM8 A 1 ? 102 ? X2G6C4 3385 ? 3486 ? 8 109 2 1 5YM8 B 1 ? 102 ? X2G6C4 3385 ? 3486 ? 8 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5YM8 HIS A 103 ? UNP X2G6C4 ? ? 'expression tag' 110 1 1 5YM8 HIS A 104 ? UNP X2G6C4 ? ? 'expression tag' 111 2 1 5YM8 HIS A 105 ? UNP X2G6C4 ? ? 'expression tag' 112 3 1 5YM8 HIS A 106 ? UNP X2G6C4 ? ? 'expression tag' 113 4 1 5YM8 HIS A 107 ? UNP X2G6C4 ? ? 'expression tag' 114 5 1 5YM8 HIS A 108 ? UNP X2G6C4 ? ? 'expression tag' 115 6 2 5YM8 HIS B 103 ? UNP X2G6C4 ? ? 'expression tag' 110 7 2 5YM8 HIS B 104 ? UNP X2G6C4 ? ? 'expression tag' 111 8 2 5YM8 HIS B 105 ? UNP X2G6C4 ? ? 'expression tag' 112 9 2 5YM8 HIS B 106 ? UNP X2G6C4 ? ? 'expression tag' 113 10 2 5YM8 HIS B 107 ? UNP X2G6C4 ? ? 'expression tag' 114 11 2 5YM8 HIS B 108 ? UNP X2G6C4 ? ? 'expression tag' 115 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 84 ? SER A 96 ? SER A 91 SER A 103 1 ? 13 HELX_P HELX_P2 AA2 SER B 84 ? SER B 96 ? SER B 91 SER B 103 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 53 ? ASN A 57 ? LYS A 60 ASN A 64 AA1 2 LEU A 42 ? LEU A 48 ? LEU A 49 LEU A 55 AA1 3 VAL A 2 ? ASP A 11 ? VAL A 9 ASP A 18 AA1 4 GLU A 16 ? ARG A 26 ? GLU A 23 ARG A 33 AA1 5 LYS A 29 ? SER A 37 ? LYS A 36 SER A 44 AA1 6 VAL A 75 ? PHE A 79 ? VAL A 82 PHE A 86 AA1 7 MET A 62 ? PHE A 64 ? MET A 69 PHE A 71 AA2 1 LYS B 53 ? ASN B 57 ? LYS B 60 ASN B 64 AA2 2 LEU B 42 ? LEU B 48 ? LEU B 49 LEU B 55 AA2 3 VAL B 2 ? ASP B 11 ? VAL B 9 ASP B 18 AA2 4 GLU B 16 ? ARG B 26 ? GLU B 23 ARG B 33 AA2 5 LYS B 29 ? SER B 37 ? LYS B 36 SER B 44 AA2 6 LYS B 71 ? PHE B 79 ? LYS B 78 PHE B 86 AA2 7 MET B 62 ? VAL B 68 ? MET B 69 VAL B 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 54 ? O THR A 61 N CYS A 47 ? N CYS A 54 AA1 2 3 O LYS A 43 ? O LYS A 50 N GLN A 10 ? N GLN A 17 AA1 3 4 N ASN A 7 ? N ASN A 14 O VAL A 19 ? O VAL A 26 AA1 4 5 N PHE A 22 ? N PHE A 29 O VAL A 33 ? O VAL A 40 AA1 5 6 N SER A 37 ? N SER A 44 O TYR A 76 ? O TYR A 83 AA1 6 7 O LEU A 77 ? O LEU A 84 N MET A 62 ? N MET A 69 AA2 1 2 O THR B 54 ? O THR B 61 N CYS B 47 ? N CYS B 54 AA2 2 3 O LYS B 43 ? O LYS B 50 N GLN B 10 ? N GLN B 17 AA2 3 4 N ALA B 5 ? N ALA B 12 O SER B 21 ? O SER B 28 AA2 4 5 N PHE B 22 ? N PHE B 29 O VAL B 33 ? O VAL B 40 AA2 5 6 N SER B 37 ? N SER B 44 O TYR B 76 ? O TYR B 83 AA2 6 7 O VAL B 75 ? O VAL B 82 N PHE B 64 ? N PHE B 71 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 12 ? ? -148.57 -150.52 2 1 ASN A 89 ? ? 70.78 -6.73 3 1 ASN A 89 ? ? 70.78 -7.42 4 1 ALA B 12 ? ? -148.63 -149.57 5 1 THR B 105 ? ? -91.44 -129.41 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 57 ? A GLU 50 2 1 Y 1 A HIS 73 ? A HIS 66 3 1 Y 1 A THR 74 ? A THR 67 4 1 Y 1 A VAL 75 ? A VAL 68 5 1 Y 1 A GLY 76 ? A GLY 69 6 1 Y 1 A GLY 77 ? A GLY 70 7 1 Y 1 A LYS 78 ? A LYS 71 8 1 Y 1 A GLN 79 ? A GLN 72 9 1 Y 1 A THR 106 ? A THR 99 10 1 Y 1 A ILE 107 ? A ILE 100 11 1 Y 1 A LEU 108 ? A LEU 101 12 1 Y 1 A GLN 109 ? A GLN 102 13 1 Y 1 A HIS 110 ? A HIS 103 14 1 Y 1 A HIS 111 ? A HIS 104 15 1 Y 1 A HIS 112 ? A HIS 105 16 1 Y 1 A HIS 113 ? A HIS 106 17 1 Y 1 A HIS 114 ? A HIS 107 18 1 Y 1 A HIS 115 ? A HIS 108 19 1 Y 1 B GLU 57 ? B GLU 50 20 1 Y 1 B LEU 108 ? B LEU 101 21 1 Y 1 B GLN 109 ? B GLN 102 22 1 Y 1 B HIS 110 ? B HIS 103 23 1 Y 1 B HIS 111 ? B HIS 104 24 1 Y 1 B HIS 112 ? B HIS 105 25 1 Y 1 B HIS 113 ? B HIS 106 26 1 Y 1 B HIS 114 ? B HIS 107 27 1 Y 1 B HIS 115 ? B HIS 108 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _atom_sites.entry_id 5YM8 _atom_sites.fract_transf_matrix[1][1] 0.031700 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009140 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011924 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028636 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_