HEADER VIRAL PROTEIN 22-OCT-17 5YMU TITLE FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF P[19] ROTAVIRUS VP8* TITLE 2 INTERACTION WITH HISTO-BLOOD GROUP ANTIGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: P[6] VP8*; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10967; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 5 PPPARG4; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS ROTAVIRUS, P[19] VP8*, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.SUN,Z.DUAN REVDAT 3 22-NOV-23 5YMU 1 REMARK REVDAT 2 11-JUL-18 5YMU 1 JRNL REVDAT 1 23-MAY-18 5YMU 0 JRNL AUTH X.SUN,D.LI,J.QI,W.CHAI,L.WANG,L.WANG,R.PENG,H.WANG,Q.ZHANG, JRNL AUTH 2 L.PANG,X.KONG,H.WANG,M.JIN,G.F.GAO,Z.DUAN JRNL TITL GLYCAN BINDING SPECIFICITY AND MECHANISM OF HUMAN AND JRNL TITL 2 PORCINE P[6]/P[19] ROTAVIRUS VP8*S. JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 29720519 JRNL DOI 10.1128/JVI.00538-18 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 73566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 36.3251 -37.9375 25.8261 REMARK 3 T TENSOR REMARK 3 T11: 0.0558 T22: 0.0714 REMARK 3 T33: 0.0777 T12: 0.0033 REMARK 3 T13: 0.0060 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2469 L22: 0.1279 REMARK 3 L33: 0.2605 L12: -0.0235 REMARK 3 L13: 0.0128 L23: 0.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0166 S13: 0.0013 REMARK 3 S21: -0.0320 S22: -0.0068 S23: 0.0106 REMARK 3 S31: -0.0154 S32: -0.0381 S33: 0.0578 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97775 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.796 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8950 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5GJ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES MONOHYDRATE PH 6.0, 25% W/V REMARK 280 POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.69800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.93076 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.19733 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 65.69800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.93076 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.19733 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 65.69800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.93076 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.19733 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.86152 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 82.39467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 75.86152 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 82.39467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 75.86152 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 82.39467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 417 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 357 O HOH B 435 1.82 REMARK 500 O HOH B 302 O HOH B 440 1.82 REMARK 500 O HOH C 324 O HOH C 447 1.89 REMARK 500 OG SER D 131 O HOH D 201 1.95 REMARK 500 O LEU D 160 O HOH D 202 2.02 REMARK 500 O HOH C 312 O HOH C 420 2.03 REMARK 500 O HOH C 454 O HOH C 455 2.04 REMARK 500 OE1 GLU C 134 O HOH C 301 2.04 REMARK 500 OE1 GLU D 134 O HOH D 203 2.05 REMARK 500 NH1 ARG A 109 O HOH A 301 2.07 REMARK 500 O HOH C 338 O HOH C 376 2.08 REMARK 500 O HOH B 301 O HOH B 322 2.08 REMARK 500 O HOH A 459 O HOH A 475 2.11 REMARK 500 O HOH A 481 O HOH A 491 2.12 REMARK 500 O HOH C 443 O HOH C 458 2.13 REMARK 500 O HOH D 249 O HOH D 306 2.14 REMARK 500 O HOH A 442 O HOH A 449 2.16 REMARK 500 O HOH C 401 O HOH C 457 2.17 REMARK 500 NH2 ARG A 109 O HOH A 302 2.17 REMARK 500 O HOH B 303 O HOH B 454 2.18 REMARK 500 OE1 GLN A 64 O HOH A 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 421 O HOH B 457 3655 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -76.10 -98.48 REMARK 500 THR A 36 -65.21 -130.15 REMARK 500 ASN A 129 52.39 -141.08 REMARK 500 THR B 24 -74.36 -99.73 REMARK 500 ASN B 25 20.72 -142.58 REMARK 500 THR B 36 -62.63 -125.47 REMARK 500 ASN B 70 36.80 -89.06 REMARK 500 ASN B 129 56.19 -144.59 REMARK 500 THR C 24 -79.25 -100.54 REMARK 500 THR C 36 -64.03 -131.62 REMARK 500 ASN C 70 32.85 -89.86 REMARK 500 ASN C 129 55.42 -141.25 REMARK 500 LEU D 2 107.99 68.30 REMARK 500 THR D 24 -73.81 -99.98 REMARK 500 ASN D 25 19.05 -143.84 REMARK 500 ARG D 35 17.23 57.80 REMARK 500 THR D 36 -66.27 -123.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 484 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 485 DISTANCE = 6.10 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 201 DBREF 5YMU A 1 160 PDB 5YMU 5YMU 1 160 DBREF 5YMU B 1 160 PDB 5YMU 5YMU 1 160 DBREF 5YMU C 1 160 PDB 5YMU 5YMU 1 160 DBREF 5YMU D 1 160 PDB 5YMU 5YMU 1 160 SEQRES 1 A 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ARG PHE LYS PRO SEQRES 2 A 160 PRO ASN ASP TYR TRP ILE LEU LEU SER PRO THR ASN GLN SEQRES 3 A 160 GLN VAL VAL LEU GLU GLY THR ASN ARG THR ASP VAL TRP SEQRES 4 A 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 A 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 A 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE TYR GLU SEQRES 7 A 160 MET PHE ARG ASN SER ALA SER ALA GLU PHE GLN HIS LYS SEQRES 8 A 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE LEU SEQRES 9 A 160 LYS HIS GLY GLY ARG VAL TRP THR PHE TYR GLY GLU THR SEQRES 10 A 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 A 160 SER GLU VAL GLU THR VAL ILE ARG THR GLU PHE TYR ILE SEQRES 12 A 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 A 160 ASN THR GLY LEU SEQRES 1 B 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ARG PHE LYS PRO SEQRES 2 B 160 PRO ASN ASP TYR TRP ILE LEU LEU SER PRO THR ASN GLN SEQRES 3 B 160 GLN VAL VAL LEU GLU GLY THR ASN ARG THR ASP VAL TRP SEQRES 4 B 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 B 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 B 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE TYR GLU SEQRES 7 B 160 MET PHE ARG ASN SER ALA SER ALA GLU PHE GLN HIS LYS SEQRES 8 B 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE LEU SEQRES 9 B 160 LYS HIS GLY GLY ARG VAL TRP THR PHE TYR GLY GLU THR SEQRES 10 B 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 B 160 SER GLU VAL GLU THR VAL ILE ARG THR GLU PHE TYR ILE SEQRES 12 B 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 B 160 ASN THR GLY LEU SEQRES 1 C 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ARG PHE LYS PRO SEQRES 2 C 160 PRO ASN ASP TYR TRP ILE LEU LEU SER PRO THR ASN GLN SEQRES 3 C 160 GLN VAL VAL LEU GLU GLY THR ASN ARG THR ASP VAL TRP SEQRES 4 C 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 C 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 C 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE TYR GLU SEQRES 7 C 160 MET PHE ARG ASN SER ALA SER ALA GLU PHE GLN HIS LYS SEQRES 8 C 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE LEU SEQRES 9 C 160 LYS HIS GLY GLY ARG VAL TRP THR PHE TYR GLY GLU THR SEQRES 10 C 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 C 160 SER GLU VAL GLU THR VAL ILE ARG THR GLU PHE TYR ILE SEQRES 12 C 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 C 160 ASN THR GLY LEU SEQRES 1 D 160 VAL LEU ASP GLY PRO TYR GLN PRO THR ARG PHE LYS PRO SEQRES 2 D 160 PRO ASN ASP TYR TRP ILE LEU LEU SER PRO THR ASN GLN SEQRES 3 D 160 GLN VAL VAL LEU GLU GLY THR ASN ARG THR ASP VAL TRP SEQRES 4 D 160 VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN GLN SEQRES 5 D 160 SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN ILE SEQRES 6 D 160 THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE TYR GLU SEQRES 7 D 160 MET PHE ARG ASN SER ALA SER ALA GLU PHE GLN HIS LYS SEQRES 8 D 160 ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE LEU SEQRES 9 D 160 LYS HIS GLY GLY ARG VAL TRP THR PHE TYR GLY GLU THR SEQRES 10 D 160 PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN LEU SEQRES 11 D 160 SER GLU VAL GLU THR VAL ILE ARG THR GLU PHE TYR ILE SEQRES 12 D 160 ILE PRO ARG SER GLN GLU SER LYS CYS ASN GLU TYR ILE SEQRES 13 D 160 ASN THR GLY LEU HET GOL A 201 6 HET GOL B 201 6 HET GOL C 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *692(H2 O) HELIX 1 AA1 ASN A 129 VAL A 133 5 5 HELIX 2 AA2 GLN A 148 GLY A 159 1 12 HELIX 3 AA3 ASN B 129 VAL B 133 5 5 HELIX 4 AA4 GLN B 148 GLY B 159 1 12 HELIX 5 AA5 ASN C 129 VAL C 133 5 5 HELIX 6 AA6 GLN C 148 GLY C 159 1 12 HELIX 7 AA7 GLN D 148 GLY D 159 1 12 SHEET 1 AA111 ASP A 3 TYR A 6 0 SHEET 2 AA111 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA111 TYR A 17 SER A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA111 ALA A 101 HIS A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA111 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA111 GLN A 89 SER A 96 1 N THR A 95 O GLY A 115 SHEET 7 AA111 TRP A 74 ARG A 81 -1 N TRP A 74 O SER A 96 SHEET 8 AA111 TRP A 39 VAL A 45 -1 N VAL A 45 O LYS A 75 SHEET 9 AA111 VAL A 28 THR A 33 -1 N GLY A 32 O VAL A 40 SHEET 10 AA111 GLU A 134 ILE A 137 -1 O VAL A 136 N GLU A 31 SHEET 11 AA111 THR A 9 PHE A 11 -1 N THR A 9 O ILE A 137 SHEET 1 AA2 6 ASP A 3 TYR A 6 0 SHEET 2 AA2 6 GLU A 140 PRO A 145 -1 O PHE A 141 N TYR A 6 SHEET 3 AA2 6 TYR A 17 SER A 22 -1 N TRP A 18 O ILE A 144 SHEET 4 AA2 6 ALA A 101 HIS A 106 -1 O PHE A 103 N ILE A 19 SHEET 5 AA2 6 ARG A 109 GLU A 116 -1 O TRP A 111 N LEU A 104 SHEET 6 AA2 6 THR A 121 SER A 126 -1 O THR A 121 N TYR A 114 SHEET 1 AA3 2 VAL A 49 LEU A 58 0 SHEET 2 AA3 2 GLU A 61 ASN A 69 -1 O ILE A 65 N ARG A 54 SHEET 1 AA411 ASP B 3 TYR B 6 0 SHEET 2 AA411 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA411 TYR B 17 SER B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA411 ALA B 101 HIS B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA411 ARG B 109 GLU B 116 -1 O TRP B 111 N LEU B 104 SHEET 6 AA411 GLN B 89 SER B 96 1 N THR B 95 O GLY B 115 SHEET 7 AA411 TRP B 74 ARG B 81 -1 N GLU B 78 O LYS B 91 SHEET 8 AA411 TRP B 39 VAL B 45 -1 N VAL B 45 O LYS B 75 SHEET 9 AA411 VAL B 28 THR B 33 -1 N GLY B 32 O VAL B 40 SHEET 10 AA411 GLU B 134 ILE B 137 -1 O VAL B 136 N GLU B 31 SHEET 11 AA411 THR B 9 PHE B 11 -1 N THR B 9 O ILE B 137 SHEET 1 AA5 6 ASP B 3 TYR B 6 0 SHEET 2 AA5 6 GLU B 140 PRO B 145 -1 O PHE B 141 N TYR B 6 SHEET 3 AA5 6 TYR B 17 SER B 22 -1 N TRP B 18 O ILE B 144 SHEET 4 AA5 6 ALA B 101 HIS B 106 -1 O PHE B 103 N ILE B 19 SHEET 5 AA5 6 ARG B 109 GLU B 116 -1 O TRP B 111 N LEU B 104 SHEET 6 AA5 6 THR B 121 SER B 126 -1 O SER B 125 N VAL B 110 SHEET 1 AA6 2 VAL B 49 LEU B 58 0 SHEET 2 AA6 2 GLU B 61 ASN B 69 -1 O ASN B 69 N VAL B 49 SHEET 1 AA711 ASP C 3 TYR C 6 0 SHEET 2 AA711 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA711 TYR C 17 SER C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA711 ALA C 101 HIS C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA711 ARG C 109 GLU C 116 -1 O TRP C 111 N LEU C 104 SHEET 6 AA711 GLN C 89 SER C 96 1 N THR C 95 O GLY C 115 SHEET 7 AA711 TRP C 74 ARG C 81 -1 N PHE C 76 O LEU C 94 SHEET 8 AA711 TRP C 39 VAL C 45 -1 N ALA C 41 O MET C 79 SHEET 9 AA711 VAL C 28 THR C 33 -1 N GLY C 32 O VAL C 40 SHEET 10 AA711 GLU C 134 ILE C 137 -1 O VAL C 136 N GLU C 31 SHEET 11 AA711 THR C 9 PHE C 11 -1 N THR C 9 O ILE C 137 SHEET 1 AA8 6 ASP C 3 TYR C 6 0 SHEET 2 AA8 6 GLU C 140 PRO C 145 -1 O PHE C 141 N TYR C 6 SHEET 3 AA8 6 TYR C 17 SER C 22 -1 N TRP C 18 O ILE C 144 SHEET 4 AA8 6 ALA C 101 HIS C 106 -1 O PHE C 103 N ILE C 19 SHEET 5 AA8 6 ARG C 109 GLU C 116 -1 O TRP C 111 N LEU C 104 SHEET 6 AA8 6 THR C 121 SER C 126 -1 O SER C 125 N VAL C 110 SHEET 1 AA9 2 VAL C 49 LEU C 58 0 SHEET 2 AA9 2 GLU C 61 ASN C 69 -1 O ILE C 65 N ARG C 54 SHEET 1 AB111 ASP D 3 TYR D 6 0 SHEET 2 AB111 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB111 TYR D 17 SER D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB111 ALA D 101 HIS D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB111 ARG D 109 GLU D 116 -1 O TRP D 111 N LEU D 104 SHEET 6 AB111 GLN D 89 SER D 96 1 N THR D 95 O GLY D 115 SHEET 7 AB111 TRP D 74 ARG D 81 -1 N GLU D 78 O ARG D 92 SHEET 8 AB111 TRP D 39 VAL D 45 -1 N VAL D 45 O LYS D 75 SHEET 9 AB111 VAL D 28 THR D 33 -1 N GLY D 32 O VAL D 40 SHEET 10 AB111 GLU D 134 ILE D 137 -1 O VAL D 136 N GLU D 31 SHEET 11 AB111 THR D 9 PHE D 11 -1 N THR D 9 O ILE D 137 SHEET 1 AB2 6 ASP D 3 TYR D 6 0 SHEET 2 AB2 6 GLU D 140 PRO D 145 -1 O PHE D 141 N TYR D 6 SHEET 3 AB2 6 TYR D 17 SER D 22 -1 N TRP D 18 O ILE D 144 SHEET 4 AB2 6 ALA D 101 HIS D 106 -1 O PHE D 103 N ILE D 19 SHEET 5 AB2 6 ARG D 109 GLU D 116 -1 O TRP D 111 N LEU D 104 SHEET 6 AB2 6 THR D 121 SER D 126 -1 O THR D 121 N TYR D 114 SHEET 1 AB3 2 VAL D 49 LEU D 58 0 SHEET 2 AB3 2 GLU D 61 ASN D 69 -1 O ILE D 65 N ARG D 54 CISPEP 1 GLY A 4 PRO A 5 0 3.47 CISPEP 2 THR A 117 PRO A 118 0 3.46 CISPEP 3 GLY B 4 PRO B 5 0 3.03 CISPEP 4 THR B 117 PRO B 118 0 2.63 CISPEP 5 GLY C 4 PRO C 5 0 0.76 CISPEP 6 THR C 117 PRO C 118 0 2.67 CISPEP 7 GLY D 4 PRO D 5 0 1.56 CISPEP 8 THR D 117 PRO D 118 0 3.18 SITE 1 AC1 5 ARG A 109 TRP A 111 THR A 122 ARG A 146 SITE 2 AC1 5 GLU A 149 SITE 1 AC2 7 LEU B 104 HIS B 106 TRP B 111 THR B 122 SITE 2 AC2 7 ARG B 146 GLU B 149 HOH B 310 SITE 1 AC3 5 HIS C 106 THR C 122 ARG C 146 GLU C 149 SITE 2 AC3 5 HOH C 331 CRYST1 131.396 131.396 123.592 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007611 0.004394 0.000000 0.00000 SCALE2 0.000000 0.008788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008091 0.00000