HEADER PROTEIN BINDING 25-OCT-17 5YNR TITLE SOLUTION STRUCTURE OF GLIA MATURATION FACTOR FROM CAENORHABDITIS TITLE 2 ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLIA MUTATION FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: CELE_Y50D7A.10, Y50D7A.10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADF-H, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.MAHESHWARI,V.K.SHUKLA,D.KUMAR,A.ARORA REVDAT 3 15-MAY-24 5YNR 1 REMARK REVDAT 2 14-JUN-23 5YNR 1 REMARK REVDAT 1 24-OCT-18 5YNR 0 JRNL AUTH D.MAHESHWARI,V.K.SHUKLA,A.JAIN,S.TRIPATHI,D.KUMAR,A.ARORA JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF GLIA MATURATION FACTOR JRNL TITL 2 FROM CAENORHABDITIS ELEGANS JRNL REF BIOCHIM BIOPHYS ACTA V.1866 1008 2018 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1570-9639 JRNL PMID 29981887 JRNL DOI 10.1016/J.BBAPAP.2018.06.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YNR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005565. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.1 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.1 % SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O; 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 0.1 % SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D CBHD; 2D CBHE; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HCCCONH; 3D REMARK 210 CCCONH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 LEU A 87 HG3 LYS A 119 1.19 REMARK 500 HG12 ILE A 89 HB THR A 121 1.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 2 24.37 -160.61 REMARK 500 1 GLN A 64 24.39 45.53 REMARK 500 1 PRO A 66 92.25 -68.12 REMARK 500 1 CYS A 74 98.17 -66.69 REMARK 500 1 PRO A 93 -157.48 -93.41 REMARK 500 1 ASP A 125 161.74 171.42 REMARK 500 1 LYS A 137 -65.12 -106.50 REMARK 500 2 THR A 2 -89.05 -95.51 REMARK 500 2 SER A 3 104.82 -162.25 REMARK 500 2 THR A 28 -166.74 -104.37 REMARK 500 2 CYS A 74 93.94 -67.03 REMARK 500 2 SER A 78 0.67 -63.99 REMARK 500 2 GLU A 80 56.81 78.64 REMARK 500 2 TYR A 84 77.48 -117.82 REMARK 500 2 PRO A 93 -154.57 -83.71 REMARK 500 2 ARG A 124 67.64 -111.63 REMARK 500 2 ASP A 125 160.02 171.61 REMARK 500 2 ASP A 130 -159.95 -158.95 REMARK 500 3 GLN A 64 16.29 50.77 REMARK 500 3 SER A 78 0.72 -64.15 REMARK 500 3 PRO A 93 -147.55 -90.84 REMARK 500 3 ASP A 130 -173.23 -170.98 REMARK 500 4 THR A 2 -53.52 -151.98 REMARK 500 4 GLN A 64 -2.29 54.71 REMARK 500 4 CYS A 74 97.21 -66.36 REMARK 500 4 SER A 78 0.31 -65.38 REMARK 500 4 PRO A 93 -113.67 -89.90 REMARK 500 4 ASP A 125 156.44 175.42 REMARK 500 5 PRO A 66 96.45 -67.26 REMARK 500 5 CYS A 74 95.06 -67.56 REMARK 500 5 SER A 78 0.30 -61.54 REMARK 500 5 GLU A 80 -3.62 74.30 REMARK 500 5 PRO A 93 -157.39 -89.26 REMARK 500 5 ARG A 124 68.74 -110.43 REMARK 500 5 ASP A 125 169.74 171.84 REMARK 500 5 ASP A 130 -170.11 -175.57 REMARK 500 6 GLN A 64 27.23 45.10 REMARK 500 6 SER A 78 -9.30 -58.40 REMARK 500 6 ASP A 79 38.36 -90.76 REMARK 500 6 GLU A 80 12.12 83.07 REMARK 500 6 PRO A 85 109.94 -59.56 REMARK 500 6 PRO A 93 -152.42 -95.61 REMARK 500 6 ASP A 125 163.09 172.35 REMARK 500 6 ASP A 130 -157.84 -175.88 REMARK 500 7 THR A 2 -83.41 25.12 REMARK 500 7 THR A 28 -169.12 -103.32 REMARK 500 7 GLN A 64 -47.41 68.19 REMARK 500 7 PRO A 93 -87.85 -86.42 REMARK 500 7 ASP A 125 161.67 171.40 REMARK 500 7 ASP A 130 -162.70 -171.54 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36128 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF GLIA MATURATION FACTOR FROM CAENORHABDITIS REMARK 900 ELEGANS DBREF 5YNR A 1 138 UNP Q8IAA5 Q8IAA5_CAEEL 1 138 SEQADV 5YNR GLY A -1 UNP Q8IAA5 EXPRESSION TAG SEQADV 5YNR ALA A 0 UNP Q8IAA5 EXPRESSION TAG SEQRES 1 A 140 GLY ALA MET THR SER SER LEU THR ILE CYS SER ILE PRO SEQRES 2 A 140 ASP GLY VAL LYS GLU ASP LEU LYS LYS PHE ARG PHE SER SEQRES 3 A 140 LYS SER THR THR MET ASN ALA LEU ILE LEU LYS ILE ASP SEQRES 4 A 140 ARG GLU SER HIS GLU LEU GLN SER GLU GLN LEU LEU ASN SEQRES 5 A 140 ASP CYS SER ILE GLU GLU PHE LYS GLU GLU LEU PRO SER SEQRES 6 A 140 GLN GLN PRO ARG PHE ILE LEU LEU SER TRP CYS LYS LYS SEQRES 7 A 140 HIS SER ASP GLU ARG ILE SER TYR PRO MET LEU LEU ILE SEQRES 8 A 140 TYR TYR CYS PRO ASN GLY SER SER PRO GLU LEU GLN MET SEQRES 9 A 140 LEU TYR ALA GLY SER ARG ASN PHE ILE VAL ASN GLU CYS SEQRES 10 A 140 HIS VAL SER LYS ASN THR GLU ILE ARG ASP ILE ASP GLU SEQRES 11 A 140 ILE ASP ASP GLU LEU LEU GLU SER LYS PHE HELIX 1 AA1 PRO A 11 SER A 24 1 14 HELIX 2 AA2 SER A 53 GLU A 60 1 8 HELIX 3 AA3 SER A 97 CYS A 115 1 19 HELIX 4 AA4 ASP A 130 PHE A 138 1 9 SHEET 1 AA1 5 LEU A 43 LEU A 49 0 SHEET 2 AA1 5 ASN A 30 ILE A 36 -1 N LYS A 35 O GLN A 44 SHEET 3 AA1 5 ARG A 67 SER A 72 -1 O LEU A 70 N LEU A 32 SHEET 4 AA1 5 MET A 86 TYR A 91 -1 O LEU A 87 N LEU A 71 SHEET 5 AA1 5 LYS A 119 ILE A 123 1 O THR A 121 N TYR A 90 SHEET 1 AA2 2 LYS A 75 LYS A 76 0 SHEET 2 AA2 2 ILE A 82 SER A 83 -1 O SER A 83 N LYS A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1