HEADER TRANSFERASE 25-OCT-17 5YNV TITLE CRYSTAL STRUCTURE OF AN AROMATIC PRENYLTRANSFERASE FAMD1 FROM TITLE 2 FISCHERELLA AMBIGUA UTEX 1903 IN COMPLEX WITH DMASPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC PRENYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FISCHERELLA AMBIGUA UTEX 1903; SOURCE 3 ORGANISM_TAXID: 230521; SOURCE 4 GENE: AMBP3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,W.D.LIU,C.C.CHEN,R.T.GUO REVDAT 4 27-MAR-24 5YNV 1 HETSYN REVDAT 3 16-OCT-19 5YNV 1 COMPND FORMUL REVDAT 2 06-FEB-19 5YNV 1 TITLE REVDAT 1 29-AUG-18 5YNV 0 JRNL AUTH J.WANG,C.C.CHEN,Y.YANG,W.LIU,T.P.KO,N.SHANG,X.HU,Y.XIE, JRNL AUTH 2 J.W.HUANG,Y.ZHANG,R.T.GUO JRNL TITL STRUCTURAL INSIGHT INTO A NOVEL INDOLE PRENYLTRANSFERASE IN JRNL TITL 2 HAPALINDOLE-TYPE ALKALOID BIOSYNTHESIS. JRNL REF BIOCHEM. BIOPHYS. RES. V. 495 1782 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29229390 JRNL DOI 10.1016/J.BBRC.2017.12.039 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 85679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.118 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 747 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5081 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6912 ; 1.450 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 614 ; 6.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;35.982 ;24.637 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 810 ;14.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 746 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3931 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5081 ; 8.708 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 506 ;30.101 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5188 ;21.872 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5YNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CITRATE, 0.1 M IMIDAZOLE REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.26000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.26000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.95850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 105.71000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.95850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 105.71000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.26000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.95850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 105.71000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.26000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.95850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 105.71000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 793 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 711 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 737 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 ASP A 267 REMARK 465 ALA A 268 REMARK 465 ILE A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 465 ALA A 301 REMARK 465 ASN A 302 REMARK 465 SER A 303 REMARK 465 VAL A 304 REMARK 465 PHE A 305 REMARK 465 ASP A 306 REMARK 465 LEU A 307 REMARK 465 PRO A 308 REMARK 465 SER A 309 REMARK 465 SER A 310 REMARK 465 ASP A 311 REMARK 465 THR A 312 REMARK 465 GLU A 313 REMARK 465 ASP A 314 REMARK 465 LYS A 315 REMARK 465 LEU A 316 REMARK 465 ASN A 317 REMARK 465 SER A 318 REMARK 465 ILE A 319 REMARK 465 VAL A 320 REMARK 465 MET A 321 REMARK 465 SER A 322 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 SER B 309 REMARK 465 SER B 310 REMARK 465 ASP B 311 REMARK 465 THR B 312 REMARK 465 GLU B 313 REMARK 465 ASP B 314 REMARK 465 LYS B 315 REMARK 465 LEU B 316 REMARK 465 ASN B 317 REMARK 465 SER B 318 REMARK 465 ILE B 319 REMARK 465 VAL B 320 REMARK 465 MET B 321 REMARK 465 SER B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 111 -56.52 -135.90 REMARK 500 ASN B 40 29.52 -146.93 REMARK 500 TYR B 111 -57.20 -137.33 REMARK 500 LYS B 269 54.81 -161.27 REMARK 500 LYS B 270 164.91 87.91 REMARK 500 ASP B 306 68.34 -152.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 871 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 876 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DST B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YNT RELATED DB: PDB REMARK 900 SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 5YNU RELATED DB: PDB REMARK 900 SAME PROTEIN WITH LIGAND2 REMARK 900 RELATED ID: 5YNW RELATED DB: PDB REMARK 900 SAME PROTEIN WITH LIGAND 1 AND 2 DBREF 5YNV A 1 322 UNP V5TDY7 V5TDY7_9CYAN 1 322 DBREF 5YNV B 1 322 UNP V5TDY7 V5TDY7_9CYAN 1 322 SEQADV 5YNV GLY A -6 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV SER A -5 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA A -4 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV GLY A -3 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA A -2 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV GLY A -1 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA A 0 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV GLY B -6 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV SER B -5 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA B -4 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV GLY B -3 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA B -2 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV GLY B -1 UNP V5TDY7 EXPRESSION TAG SEQADV 5YNV ALA B 0 UNP V5TDY7 EXPRESSION TAG SEQRES 1 A 329 GLY SER ALA GLY ALA GLY ALA MET THR ILE VAL ASN ARG SEQRES 2 A 329 ILE ARG THR ASP VAL VAL ASN VAL ALA LYS SER PHE GLY SEQRES 3 A 329 ALA GLU TYR SER GLU ALA VAL ILE ASP GLN ILE PHE GLN SEQRES 4 A 329 GLY PHE GLY GLU LYS PHE THR ASN THR GLY PHE ALA ILE SEQRES 5 A 329 ARG VAL GLN ASN LYS ARG ASN GLN LYS VAL ASP CYS ASN SEQRES 6 A 329 ILE ARG TYR GLY GLU ALA LYS GLU ASN CYS LEU ALA TRP SEQRES 7 A 329 ASP ILE ALA ARG GLU SER GLY LEU LEU SER ASP GLN GLY SEQRES 8 A 329 HIS PRO VAL ASP THR LEU ILE GLN GLU MET PHE GLN ALA SEQRES 9 A 329 ILE PRO ALA ILE ALA TYR GLY ALA ASP PHE ASP ILE ASN SEQRES 10 A 329 TYR GLY LEU VAL LYS ILE TRP HIS LEU PRO LYS ILE VAL SEQRES 11 A 329 PRO VAL GLU GLU ALA PHE LYS ILE PRO SER LEU PRO LYS SEQRES 12 A 329 SER VAL ASN ALA HIS ILE ASP PHE PHE LYS LYS TYR HIS SEQRES 13 A 329 LEU ASP ALA LEU CYS ALA LEU THR VAL ASP TYR ARG ASN SEQRES 14 A 329 LYS SER THR ASN LEU TYR PHE ASP ALA HIS HIS PRO GLU SEQRES 15 A 329 GLN ARG THR THR GLN PHE TYR LYS ASN ILE LEU GLN SER SEQRES 16 A 329 GLN GLN PHE GLU VAL PRO SER ASP GLU VAL LEU GLU ILE SEQRES 17 A 329 LEU VAL ASN CYS PRO GLU ILE ALA VAL THR PHE ASN TRP SEQRES 18 A 329 SER SER PRO GLY ILE GLU ARG MET CYS PHE TYR THR ALA SEQRES 19 A 329 PHE VAL ASN ARG GLU THR VAL PRO GLN HIS ILE ASN PRO SEQRES 20 A 329 VAL LEU LYS LYS PHE ALA GLN GLU ALA PRO ALA LEU LEU SEQRES 21 A 329 ASP ASN PRO GLY PHE LEU VAL GLY TRP SER PHE GLY PRO SEQRES 22 A 329 ASP ALA LYS LYS GLY THR TYR ILE LYS ILE ASP VAL ASP SEQRES 23 A 329 TYR HIS GLY LEU VAL VAL PRO SER PHE PHE HIS MET HIS SEQRES 24 A 329 ASN LEU PRO LEU PRO ILE PRO GLU ALA ASN SER VAL PHE SEQRES 25 A 329 ASP LEU PRO SER SER ASP THR GLU ASP LYS LEU ASN SER SEQRES 26 A 329 ILE VAL MET SER SEQRES 1 B 329 GLY SER ALA GLY ALA GLY ALA MET THR ILE VAL ASN ARG SEQRES 2 B 329 ILE ARG THR ASP VAL VAL ASN VAL ALA LYS SER PHE GLY SEQRES 3 B 329 ALA GLU TYR SER GLU ALA VAL ILE ASP GLN ILE PHE GLN SEQRES 4 B 329 GLY PHE GLY GLU LYS PHE THR ASN THR GLY PHE ALA ILE SEQRES 5 B 329 ARG VAL GLN ASN LYS ARG ASN GLN LYS VAL ASP CYS ASN SEQRES 6 B 329 ILE ARG TYR GLY GLU ALA LYS GLU ASN CYS LEU ALA TRP SEQRES 7 B 329 ASP ILE ALA ARG GLU SER GLY LEU LEU SER ASP GLN GLY SEQRES 8 B 329 HIS PRO VAL ASP THR LEU ILE GLN GLU MET PHE GLN ALA SEQRES 9 B 329 ILE PRO ALA ILE ALA TYR GLY ALA ASP PHE ASP ILE ASN SEQRES 10 B 329 TYR GLY LEU VAL LYS ILE TRP HIS LEU PRO LYS ILE VAL SEQRES 11 B 329 PRO VAL GLU GLU ALA PHE LYS ILE PRO SER LEU PRO LYS SEQRES 12 B 329 SER VAL ASN ALA HIS ILE ASP PHE PHE LYS LYS TYR HIS SEQRES 13 B 329 LEU ASP ALA LEU CYS ALA LEU THR VAL ASP TYR ARG ASN SEQRES 14 B 329 LYS SER THR ASN LEU TYR PHE ASP ALA HIS HIS PRO GLU SEQRES 15 B 329 GLN ARG THR THR GLN PHE TYR LYS ASN ILE LEU GLN SER SEQRES 16 B 329 GLN GLN PHE GLU VAL PRO SER ASP GLU VAL LEU GLU ILE SEQRES 17 B 329 LEU VAL ASN CYS PRO GLU ILE ALA VAL THR PHE ASN TRP SEQRES 18 B 329 SER SER PRO GLY ILE GLU ARG MET CYS PHE TYR THR ALA SEQRES 19 B 329 PHE VAL ASN ARG GLU THR VAL PRO GLN HIS ILE ASN PRO SEQRES 20 B 329 VAL LEU LYS LYS PHE ALA GLN GLU ALA PRO ALA LEU LEU SEQRES 21 B 329 ASP ASN PRO GLY PHE LEU VAL GLY TRP SER PHE GLY PRO SEQRES 22 B 329 ASP ALA LYS LYS GLY THR TYR ILE LYS ILE ASP VAL ASP SEQRES 23 B 329 TYR HIS GLY LEU VAL VAL PRO SER PHE PHE HIS MET HIS SEQRES 24 B 329 ASN LEU PRO LEU PRO ILE PRO GLU ALA ASN SER VAL PHE SEQRES 25 B 329 ASP LEU PRO SER SER ASP THR GLU ASP LYS LEU ASN SER SEQRES 26 B 329 ILE VAL MET SER HET DST A 401 14 HET GOL A 402 6 HET DST B 401 14 HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM GOL GLYCEROL HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DST 2(C5 H12 O6 P2 S) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *747(H2 O) HELIX 1 AA1 THR A 2 GLY A 19 1 18 HELIX 2 AA2 SER A 23 THR A 41 1 19 HELIX 3 AA3 CYS A 68 SER A 77 1 10 HELIX 4 AA4 PRO A 86 ILE A 98 1 13 HELIX 5 AA5 GLU A 126 ILE A 131 5 6 HELIX 6 AA6 PRO A 135 HIS A 141 1 7 HELIX 7 AA7 HIS A 141 TYR A 148 1 8 HELIX 8 AA8 HIS A 173 ARG A 177 5 5 HELIX 9 AA9 THR A 178 GLN A 189 1 12 HELIX 10 AB1 SER A 195 VAL A 203 1 9 HELIX 11 AB2 PRO A 235 ILE A 238 5 4 HELIX 12 AB3 ASN A 239 ALA A 249 1 11 HELIX 13 AB4 LEU A 283 HIS A 292 1 10 HELIX 14 AB5 GLY B -3 GLY B 19 1 23 HELIX 15 AB6 SER B 23 THR B 41 1 19 HELIX 16 AB7 CYS B 68 SER B 77 1 10 HELIX 17 AB8 PRO B 86 ILE B 98 1 13 HELIX 18 AB9 GLU B 126 ILE B 131 5 6 HELIX 19 AC1 VAL B 138 ALA B 140 5 3 HELIX 20 AC2 HIS B 141 TYR B 148 1 8 HELIX 21 AC3 HIS B 173 ARG B 177 5 5 HELIX 22 AC4 THR B 178 GLN B 189 1 12 HELIX 23 AC5 SER B 195 VAL B 203 1 9 HELIX 24 AC6 PRO B 235 ILE B 238 5 4 HELIX 25 AC7 ASN B 239 ALA B 249 1 11 HELIX 26 AC8 LEU B 283 HIS B 292 1 10 SHEET 1 AA112 VAL A 123 PRO A 124 0 SHEET 2 AA112 ALA A 152 ASP A 159 -1 O LEU A 153 N VAL A 123 SHEET 3 AA112 SER A 164 ASP A 170 -1 O SER A 164 N ASP A 159 SHEET 4 AA112 GLU A 207 ASN A 213 -1 O PHE A 212 N THR A 165 SHEET 5 AA112 ARG A 221 PHE A 228 -1 O CYS A 223 N ALA A 209 SHEET 6 AA112 PHE A 258 PHE A 264 -1 O VAL A 260 N THR A 226 SHEET 7 AA112 TYR A 273 ASP A 279 -1 O LYS A 275 N GLY A 261 SHEET 8 AA112 GLY A 42 GLN A 48 -1 N ILE A 45 O VAL A 278 SHEET 9 AA112 ASP A 56 GLU A 63 -1 O ASN A 58 N ARG A 46 SHEET 10 AA112 ALA A 102 ASP A 108 -1 O PHE A 107 N ILE A 59 SHEET 11 AA112 GLY A 112 LEU A 119 -1 O VAL A 114 N ASP A 106 SHEET 12 AA112 ALA A 152 ASP A 159 -1 O LEU A 156 N HIS A 118 SHEET 1 AA212 VAL B 123 PRO B 124 0 SHEET 2 AA212 ALA B 152 ASP B 159 -1 O LEU B 153 N VAL B 123 SHEET 3 AA212 SER B 164 ASP B 170 -1 O SER B 164 N ASP B 159 SHEET 4 AA212 GLU B 207 ASN B 213 -1 O PHE B 212 N THR B 165 SHEET 5 AA212 ARG B 221 PHE B 228 -1 O CYS B 223 N ALA B 209 SHEET 6 AA212 PHE B 258 PHE B 264 -1 O VAL B 260 N THR B 226 SHEET 7 AA212 TYR B 273 ASP B 279 -1 O ASP B 277 N LEU B 259 SHEET 8 AA212 GLY B 42 GLN B 48 -1 N ILE B 45 O VAL B 278 SHEET 9 AA212 ASP B 56 GLU B 63 -1 O ASN B 58 N ARG B 46 SHEET 10 AA212 ALA B 102 ASP B 108 -1 O PHE B 107 N ILE B 59 SHEET 11 AA212 GLY B 112 LEU B 119 -1 O VAL B 114 N ASP B 106 SHEET 12 AA212 ALA B 152 ASP B 159 -1 O LEU B 156 N HIS B 118 SITE 1 AC1 15 ARG A 46 ARG A 60 LYS A 115 TRP A 117 SITE 2 AC1 15 ASN A 166 TYR A 168 GLU A 207 ARG A 221 SITE 3 AC1 15 TYR A 225 LYS A 275 HOH A 540 HOH A 549 SITE 4 AC1 15 HOH A 559 HOH A 628 HOH A 794 SITE 1 AC2 4 LEU A 79 TYR A 111 GLY A 112 LEU A 113 SITE 1 AC3 17 ARG B 46 ARG B 60 LYS B 115 TRP B 117 SITE 2 AC3 17 ASN B 166 TYR B 168 GLU B 207 ARG B 221 SITE 3 AC3 17 TYR B 225 LEU B 259 LYS B 275 HOH B 536 SITE 4 AC3 17 HOH B 564 HOH B 580 HOH B 583 HOH B 774 SITE 5 AC3 17 HOH B 781 CRYST1 93.917 211.420 82.520 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010648 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012118 0.00000