HEADER ALLERGEN 25-OCT-17 5YNX TITLE STRUCTURE OF HOUSE DUST MITE ALLERGEN DER F 21 IN PEG400 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLERGEN DER F 21; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DER F 5.02 ALLERGEN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DERMATOPHAGOIDES FARINAE; SOURCE 3 ORGANISM_COMMON: AMERICAN HOUSE DUST MITE; SOURCE 4 ORGANISM_TAXID: 6954; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA-GAMI (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-32 KEYWDS HOUSE DUST MITE (HDM), ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.NG,F.T.CHEW,S.L.PANG,K.L.HO,A.H.TEH,J.WATERMAN,R.RAMBO, AUTHOR 2 I.MATHAVAN,K.BEIS,Y.H.SAY REVDAT 3 27-MAR-24 5YNX 1 REMARK REVDAT 2 25-SEP-19 5YNX 1 JRNL REVDAT 1 13-MAR-19 5YNX 0 JRNL AUTH S.L.PANG,K.L.HO,J.WATERMAN,R.P.RAMBO,A.H.TEH,I.MATHAVAN, JRNL AUTH 2 G.HARRIS,K.BEIS,Y.H.SAY,M.S.ANUSHA,Y.Y.SIO,F.T.CHEW,C.L.NG JRNL TITL CRYSTAL STRUCTURE AND EPITOPE ANALYSIS OF HOUSE DUST MITE JRNL TITL 2 ALLERGEN DER F 21. JRNL REF SCI REP V. 9 4933 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30894561 JRNL DOI 10.1038/S41598-019-40879-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.L.NG,F.T.CHEW,S.L.PANG,K.L.HO,A.H.TEH,J.WATERMAN REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CHARACTERIZATION, REMARK 1 TITL 2 CRYSTALLIZATION AND X-RAY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 3 RECOMBINANT DER F 21 (RDER F 21) FROM DERMATOPHAGOIDES REMARK 1 TITL 4 FARINAE REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 71 1396 2015 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 26527267 REMARK 1 DOI 10.1107/S2053230X1501818X REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 38905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 261 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.073 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2061 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2073 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2753 ; 1.851 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4813 ; 1.263 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 256 ; 4.039 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;32.280 ;25.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;12.945 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.660 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2246 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 439 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4134 ; 5.733 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 77 ;31.391 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4285 ;16.740 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 117 B 1 117 6764 0.180 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 117 REMARK 3 RESIDUE RANGE : B 1 B 117 REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 RESIDUE RANGE : A 202 A 202 REMARK 3 RESIDUE RANGE : B 202 B 202 REMARK 3 RESIDUE RANGE : A 301 A 415 REMARK 3 RESIDUE RANGE : B 301 B 446 REMARK 3 ORIGIN FOR THE GROUP (A): -14.989 1.324 17.891 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: 0.0785 REMARK 3 T33: 0.0169 T12: -0.0022 REMARK 3 T13: -0.0062 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.1979 L22: 0.0113 REMARK 3 L33: 0.0186 L12: -0.0465 REMARK 3 L13: -0.0010 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0193 S13: 0.0035 REMARK 3 S21: -0.0007 S22: 0.0009 S23: 0.0003 REMARK 3 S31: -0.0004 S32: -0.0032 S33: -0.0017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5YNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300004913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 19.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : 0.03100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.19M TRIS PH 8.0, 32% PEG 400, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.85700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.85700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 409 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 118 REMARK 465 ASP B 118 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 25 NZ LYS B 72 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 103 CD - CE - NZ ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 413 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 414 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A 415 DISTANCE = 6.64 ANGSTROMS DBREF 5YNX A 8 118 UNP B2GM84 B2GM84_DERFA 25 136 DBREF 5YNX B 8 118 UNP B2GM84 B2GM84_DERFA 25 136 SEQADV 5YNX GLY A 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX LEU A 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX VAL A 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX PRO A 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX ARG A 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX GLY A 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX SER A 7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX GLY B 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX LEU B 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX VAL B 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX PRO B 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX ARG B 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX GLY B 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNX SER B 7 UNP B2GM84 EXPRESSION TAG SEQRES 1 A 118 GLY LEU VAL PRO ARG GLY SER GLU ASP LYS TRP ARG ASN SEQRES 2 A 118 ALA PHE ASP HIS MET LEU MET GLU GLU PHE GLU GLU LYS SEQRES 3 A 118 MET ASP GLN ILE GLU HIS GLY LEU LEU MET LEU SER GLU SEQRES 4 A 118 GLN TYR LYS GLU LEU GLU LYS THR LYS SER LYS GLU LEU SEQRES 5 A 118 LYS GLU GLN ILE LEU ARG GLU LEU THR ILE ALA GLU ASN SEQRES 6 A 118 TYR LEU ARG GLY ALA LEU LYS PHE MET GLN GLN GLU ALA SEQRES 7 A 118 LYS ARG THR ASP LEU ASN MET PHE GLU ARG TYR ASN PHE SEQRES 8 A 118 GLU THR ALA VAL SER THR ILE GLU ILE LEU VAL LYS ASP SEQRES 9 A 118 LEU ALA GLU LEU ALA LYS LYS VAL LYS ALA VAL LYS SER SEQRES 10 A 118 ASP SEQRES 1 B 118 GLY LEU VAL PRO ARG GLY SER GLU ASP LYS TRP ARG ASN SEQRES 2 B 118 ALA PHE ASP HIS MET LEU MET GLU GLU PHE GLU GLU LYS SEQRES 3 B 118 MET ASP GLN ILE GLU HIS GLY LEU LEU MET LEU SER GLU SEQRES 4 B 118 GLN TYR LYS GLU LEU GLU LYS THR LYS SER LYS GLU LEU SEQRES 5 B 118 LYS GLU GLN ILE LEU ARG GLU LEU THR ILE ALA GLU ASN SEQRES 6 B 118 TYR LEU ARG GLY ALA LEU LYS PHE MET GLN GLN GLU ALA SEQRES 7 B 118 LYS ARG THR ASP LEU ASN MET PHE GLU ARG TYR ASN PHE SEQRES 8 B 118 GLU THR ALA VAL SER THR ILE GLU ILE LEU VAL LYS ASP SEQRES 9 B 118 LEU ALA GLU LEU ALA LYS LYS VAL LYS ALA VAL LYS SER SEQRES 10 B 118 ASP HET 1PE A 201 16 HET GOL A 202 6 HET BME B 201 4 HET GOL B 202 6 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM BME BETA-MERCAPTOETHANOL HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1PE C10 H22 O6 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 BME C2 H6 O S FORMUL 7 HOH *261(H2 O) HELIX 1 AA1 ASN A 13 LYS A 48 1 36 HELIX 2 AA2 SER A 49 LYS A 79 1 31 HELIX 3 AA3 ASN A 84 ALA A 114 1 31 HELIX 4 AA4 ASN B 13 GLU B 21 1 9 HELIX 5 AA5 GLU B 22 LYS B 48 1 27 HELIX 6 AA6 SER B 49 ALA B 78 1 30 HELIX 7 AA7 ASN B 84 ALA B 114 1 31 CRYST1 123.456 27.714 90.252 90.00 125.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008100 0.000000 0.005850 0.00000 SCALE2 0.000000 0.036083 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013668 0.00000