HEADER ALLERGEN 25-OCT-17 5YNY TITLE STRUCTURE OF HOUSE DUST MITE ALLERGEN DER F 21 IN PEG2KMME COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLERGEN DER F 21; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 25-136; COMPND 5 SYNONYM: DER F 5.02 ALLERGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DERMATOPHAGOIDES FARINAE; SOURCE 3 ORGANISM_COMMON: AMERICAN HOUSE DUST MITE; SOURCE 4 ORGANISM_TAXID: 6954; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOUSE DUST MITE (HDM), ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.NG,F.T.CHEW,S.L.PANG,K.L.HO,A.H.TEH,J.WATERMAN,R.RAMBO,I.MATHAVAN REVDAT 3 27-MAR-24 5YNY 1 REMARK REVDAT 2 25-SEP-19 5YNY 1 JRNL REVDAT 1 13-MAR-19 5YNY 0 JRNL AUTH S.L.PANG,K.L.HO,J.WATERMAN,R.P.RAMBO,A.H.TEH,I.MATHAVAN, JRNL AUTH 2 G.HARRIS,K.BEIS,Y.H.SAY,M.S.ANUSHA,Y.Y.SIO,F.T.CHEW,C.L.NG JRNL TITL CRYSTAL STRUCTURE AND EPITOPE ANALYSIS OF HOUSE DUST MITE JRNL TITL 2 ALLERGEN DER F 21. JRNL REF SCI REP V. 9 4933 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30894561 JRNL DOI 10.1038/S41598-019-40879-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.L.NG,F.T.CHEW,S.L.PANG,K.L.HO,A.H.TEH,J.WATERMAN REMARK 1 TITL CLONING, EXPRESSION, PURIFICATION, CHARACTERIZATION, REMARK 1 TITL 2 CRYSTALLIZATION AND X-RAY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 3 RECOMBINANT DER F 21 (RDER F 21) FROM DERMATOPHAGOIDES REMARK 1 TITL 4 FARINAE. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 71 1396 2015 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 26527267 REMARK 1 DOI 10.1107/S2053230X1501818X REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 18302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.90000 REMARK 3 B22 (A**2) : 4.01000 REMARK 3 B33 (A**2) : 1.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.511 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3621 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3512 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4867 ; 1.591 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8043 ; 1.485 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 4.635 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;36.827 ;25.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 708 ;20.985 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4071 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 115 B 3 115 5853 0.190 0.050 REMARK 3 2 A 5 115 C 5 115 5819 0.180 0.050 REMARK 3 3 A 5 114 D 5 114 4718 0.200 0.050 REMARK 3 4 B 5 115 C 5 115 5731 0.170 0.050 REMARK 3 5 B 5 114 D 5 114 4738 0.190 0.050 REMARK 3 6 C 5 114 D 5 114 4692 0.180 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -10.8268 11.1584 19.8909 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.1904 REMARK 3 T33: 0.0464 T12: -0.0251 REMARK 3 T13: -0.0087 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 5.4395 L22: 0.0588 REMARK 3 L33: 0.4393 L12: 0.0758 REMARK 3 L13: 0.3301 L23: -0.1211 REMARK 3 S TENSOR REMARK 3 S11: 0.1803 S12: 0.0153 S13: 0.0484 REMARK 3 S21: 0.0123 S22: -0.0806 S23: 0.0277 REMARK 3 S31: -0.0740 S32: 0.0604 S33: -0.0997 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9461 0.2223 33.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.2158 REMARK 3 T33: 0.0679 T12: 0.0037 REMARK 3 T13: 0.0113 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 4.8077 L22: 0.1373 REMARK 3 L33: 0.1595 L12: -0.0811 REMARK 3 L13: -0.0204 L23: -0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.0807 S13: -0.1428 REMARK 3 S21: -0.0042 S22: -0.0810 S23: 0.0201 REMARK 3 S31: -0.0079 S32: 0.0374 S33: -0.0400 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): -30.9437 -10.4555 -0.0539 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.0941 REMARK 3 T33: 0.1018 T12: 0.0005 REMARK 3 T13: 0.0118 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 7.3679 L22: 0.0154 REMARK 3 L33: 0.6945 L12: 0.1653 REMARK 3 L13: 0.6351 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: 0.0864 S13: 0.1966 REMARK 3 S21: 0.0180 S22: -0.0321 S23: -0.0045 REMARK 3 S31: -0.0260 S32: -0.0170 S33: -0.0413 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0370 -16.5430 16.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.2072 T22: 0.2437 REMARK 3 T33: 0.0224 T12: -0.0096 REMARK 3 T13: 0.0002 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 6.8148 L22: 0.2923 REMARK 3 L33: 0.6446 L12: 0.3464 REMARK 3 L13: -0.0485 L23: -0.4113 REMARK 3 S TENSOR REMARK 3 S11: 0.1557 S12: -0.4180 S13: -0.3777 REMARK 3 S21: 0.0772 S22: -0.1257 S23: -0.0002 REMARK 3 S31: -0.1628 S32: 0.0924 S33: -0.0300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5YNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1300005003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19287 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 28.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.04600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : 0.47600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS (PH 8.0) AND 30% PEG MME REMARK 280 2000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.46700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 118 REMARK 465 ASP A 119 REMARK 465 MET B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 SER B 117 REMARK 465 ASP B 118 REMARK 465 ASP B 119 REMARK 465 MET C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 GLY C 1 REMARK 465 LEU C 2 REMARK 465 VAL C 3 REMARK 465 PRO C 4 REMARK 465 SER C 117 REMARK 465 ASP C 118 REMARK 465 ASP C 119 REMARK 465 MET D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 GLY D 1 REMARK 465 LEU D 2 REMARK 465 VAL D 3 REMARK 465 PRO D 4 REMARK 465 LYS D 116 REMARK 465 SER D 117 REMARK 465 ASP D 118 REMARK 465 ASP D 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LEU B 2 CG CD1 CD2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 GLU B 24 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 ASP C 9 CG OD1 OD2 REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 PHE C 15 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS C 17 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 21 CG CD OE1 OE2 REMARK 470 LYS C 26 CG CD CE NZ REMARK 470 LYS C 72 CG CD CE NZ REMARK 470 ASP C 82 CG OD1 OD2 REMARK 470 MET C 85 CG SD CE REMARK 470 ARG C 88 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 92 CG CD OE1 OE2 REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 SER D 7 OG REMARK 470 GLU D 8 CG CD OE1 OE2 REMARK 470 ASP D 9 CG OD1 OD2 REMARK 470 LYS D 10 CG CD CE NZ REMARK 470 LEU D 19 CG CD1 CD2 REMARK 470 GLU D 22 CG CD OE1 OE2 REMARK 470 PHE D 23 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 25 CG CD OE1 OE2 REMARK 470 ASP D 28 CG OD1 OD2 REMARK 470 HIS D 32 CG ND1 CD2 CE1 NE2 REMARK 470 LEU D 35 CG CD1 CD2 REMARK 470 SER D 38 OG REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 GLN D 40 CG CD OE1 NE2 REMARK 470 TYR D 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 GLU D 43 CG CD OE1 OE2 REMARK 470 GLU D 45 CG CD OE1 OE2 REMARK 470 LYS D 46 CG CD CE NZ REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 GLU D 54 CG CD OE1 OE2 REMARK 470 LEU D 57 CG CD1 CD2 REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 GLN D 76 CG CD OE1 NE2 REMARK 470 LYS D 79 CG CD CE NZ REMARK 470 MET D 85 CG SD CE REMARK 470 GLU D 99 CG CD OE1 OE2 REMARK 470 ASP D 104 CG OD1 OD2 REMARK 470 LYS D 110 CG CD CE NZ REMARK 470 LYS D 111 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 41 OE2 GLU B 45 1.62 REMARK 500 OE1 GLU C 22 NE2 GLN D 29 1.96 REMARK 500 CZ TYR B 41 OE2 GLU B 45 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 79 OG SER B 96 2556 1.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YNY A 8 119 UNP B2GM84 B2GM84_DERFA 25 136 DBREF 5YNY B 8 119 UNP B2GM84 B2GM84_DERFA 25 136 DBREF 5YNY C 8 119 UNP B2GM84 B2GM84_DERFA 25 136 DBREF 5YNY D 8 119 UNP B2GM84 B2GM84_DERFA 25 136 SEQADV 5YNY MET A -8 UNP B2GM84 INITIATING METHIONINE SEQADV 5YNY HIS A -7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS A -6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS A -5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS A -4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS A -3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS A -2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER A -1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER A 0 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY A 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY LEU A 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY VAL A 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY PRO A 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY ARG A 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY A 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER A 7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY MET B -8 UNP B2GM84 INITIATING METHIONINE SEQADV 5YNY HIS B -7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS B -6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS B -5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS B -4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS B -3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS B -2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER B -1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER B 0 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY B 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY LEU B 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY VAL B 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY PRO B 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY ARG B 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY B 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER B 7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY MET C -8 UNP B2GM84 INITIATING METHIONINE SEQADV 5YNY HIS C -7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS C -6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS C -5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS C -4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS C -3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS C -2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER C -1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER C 0 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY C 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY LEU C 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY VAL C 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY PRO C 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY ARG C 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY C 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER C 7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY MET D -8 UNP B2GM84 INITIATING METHIONINE SEQADV 5YNY HIS D -7 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS D -6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS D -5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS D -4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS D -3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY HIS D -2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER D -1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER D 0 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY D 1 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY LEU D 2 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY VAL D 3 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY PRO D 4 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY ARG D 5 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY GLY D 6 UNP B2GM84 EXPRESSION TAG SEQADV 5YNY SER D 7 UNP B2GM84 EXPRESSION TAG SEQRES 1 A 128 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 128 ARG GLY SER GLU ASP LYS TRP ARG ASN ALA PHE ASP HIS SEQRES 3 A 128 MET LEU MET GLU GLU PHE GLU GLU LYS MET ASP GLN ILE SEQRES 4 A 128 GLU HIS GLY LEU LEU MET LEU SER GLU GLN TYR LYS GLU SEQRES 5 A 128 LEU GLU LYS THR LYS SER LYS GLU LEU LYS GLU GLN ILE SEQRES 6 A 128 LEU ARG GLU LEU THR ILE ALA GLU ASN TYR LEU ARG GLY SEQRES 7 A 128 ALA LEU LYS PHE MET GLN GLN GLU ALA LYS ARG THR ASP SEQRES 8 A 128 LEU ASN MET PHE GLU ARG TYR ASN PHE GLU THR ALA VAL SEQRES 9 A 128 SER THR ILE GLU ILE LEU VAL LYS ASP LEU ALA GLU LEU SEQRES 10 A 128 ALA LYS LYS VAL LYS ALA VAL LYS SER ASP ASP SEQRES 1 B 128 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 128 ARG GLY SER GLU ASP LYS TRP ARG ASN ALA PHE ASP HIS SEQRES 3 B 128 MET LEU MET GLU GLU PHE GLU GLU LYS MET ASP GLN ILE SEQRES 4 B 128 GLU HIS GLY LEU LEU MET LEU SER GLU GLN TYR LYS GLU SEQRES 5 B 128 LEU GLU LYS THR LYS SER LYS GLU LEU LYS GLU GLN ILE SEQRES 6 B 128 LEU ARG GLU LEU THR ILE ALA GLU ASN TYR LEU ARG GLY SEQRES 7 B 128 ALA LEU LYS PHE MET GLN GLN GLU ALA LYS ARG THR ASP SEQRES 8 B 128 LEU ASN MET PHE GLU ARG TYR ASN PHE GLU THR ALA VAL SEQRES 9 B 128 SER THR ILE GLU ILE LEU VAL LYS ASP LEU ALA GLU LEU SEQRES 10 B 128 ALA LYS LYS VAL LYS ALA VAL LYS SER ASP ASP SEQRES 1 C 128 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 C 128 ARG GLY SER GLU ASP LYS TRP ARG ASN ALA PHE ASP HIS SEQRES 3 C 128 MET LEU MET GLU GLU PHE GLU GLU LYS MET ASP GLN ILE SEQRES 4 C 128 GLU HIS GLY LEU LEU MET LEU SER GLU GLN TYR LYS GLU SEQRES 5 C 128 LEU GLU LYS THR LYS SER LYS GLU LEU LYS GLU GLN ILE SEQRES 6 C 128 LEU ARG GLU LEU THR ILE ALA GLU ASN TYR LEU ARG GLY SEQRES 7 C 128 ALA LEU LYS PHE MET GLN GLN GLU ALA LYS ARG THR ASP SEQRES 8 C 128 LEU ASN MET PHE GLU ARG TYR ASN PHE GLU THR ALA VAL SEQRES 9 C 128 SER THR ILE GLU ILE LEU VAL LYS ASP LEU ALA GLU LEU SEQRES 10 C 128 ALA LYS LYS VAL LYS ALA VAL LYS SER ASP ASP SEQRES 1 D 128 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 D 128 ARG GLY SER GLU ASP LYS TRP ARG ASN ALA PHE ASP HIS SEQRES 3 D 128 MET LEU MET GLU GLU PHE GLU GLU LYS MET ASP GLN ILE SEQRES 4 D 128 GLU HIS GLY LEU LEU MET LEU SER GLU GLN TYR LYS GLU SEQRES 5 D 128 LEU GLU LYS THR LYS SER LYS GLU LEU LYS GLU GLN ILE SEQRES 6 D 128 LEU ARG GLU LEU THR ILE ALA GLU ASN TYR LEU ARG GLY SEQRES 7 D 128 ALA LEU LYS PHE MET GLN GLN GLU ALA LYS ARG THR ASP SEQRES 8 D 128 LEU ASN MET PHE GLU ARG TYR ASN PHE GLU THR ALA VAL SEQRES 9 D 128 SER THR ILE GLU ILE LEU VAL LYS ASP LEU ALA GLU LEU SEQRES 10 D 128 ALA LYS LYS VAL LYS ALA VAL LYS SER ASP ASP FORMUL 5 HOH *58(H2 O) HELIX 1 AA1 ASN A 13 LYS A 48 1 36 HELIX 2 AA2 SER A 49 LYS A 79 1 31 HELIX 3 AA3 ASN A 84 ALA A 114 1 31 HELIX 4 AA4 ASN B 13 LYS B 48 1 36 HELIX 5 AA5 SER B 49 LYS B 79 1 31 HELIX 6 AA6 ASN B 84 ALA B 114 1 31 HELIX 7 AA7 ASN C 13 LYS C 48 1 36 HELIX 8 AA8 SER C 49 LYS C 79 1 31 HELIX 9 AA9 ASN C 84 ALA C 114 1 31 HELIX 10 AB1 ASN D 13 LYS D 48 1 36 HELIX 11 AB2 SER D 49 LYS D 79 1 31 HELIX 12 AB3 ASN D 84 ALA D 114 1 31 CRYST1 63.237 50.934 69.642 90.00 97.33 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015814 0.000000 0.002034 0.00000 SCALE2 0.000000 0.019633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014477 0.00000