HEADER SIGNALING PROTEIN 01-NOV-17 5YP7 TITLE P62/SQSTM1 ZZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUESTOSOME-1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: EBI3-ASSOCIATED PROTEIN OF 60 KDA,P60,PHOSPHOTYROSINE- COMPND 5 INDEPENDENT LIGAND FOR THE LCK SH2 DOMAIN OF 62 KDA,UBIQUITIN-BINDING COMPND 6 PROTEIN P62; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SQSTM1, ORCA, OSIL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS COMPLEX, P62/SQSTM1, ZZ DOMAIN, AUTOPHAGY, N-END RULE, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.H.KWON,L.KIM,H.K.SONG REVDAT 3 27-MAR-24 5YP7 1 REMARK REVDAT 2 03-OCT-18 5YP7 1 TITLE REVDAT 1 29-AUG-18 5YP7 0 JRNL AUTH D.H.KWON,O.H.PARK,L.KIM,Y.O.JUNG,Y.PARK,H.JEONG,J.HYUN, JRNL AUTH 2 Y.K.KIM,H.K.SONG JRNL TITL INSIGHTS INTO DEGRADATION MECHANISM OF N-END RULE SUBSTRATES JRNL TITL 2 BY P62/SQSTM1 AUTOPHAGY ADAPTER. JRNL REF NAT COMMUN V. 9 3291 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 30120248 JRNL DOI 10.1038/S41467-018-05825-X REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 15676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7593 - 3.1651 0.91 1275 142 0.1740 0.1721 REMARK 3 2 3.1651 - 2.5125 1.00 1328 147 0.1778 0.2076 REMARK 3 3 2.5125 - 2.1950 1.00 1315 146 0.1758 0.2174 REMARK 3 4 2.1950 - 1.9943 1.00 1284 144 0.1863 0.2336 REMARK 3 5 1.9943 - 1.8514 1.00 1290 143 0.1877 0.2140 REMARK 3 6 1.8514 - 1.7422 1.00 1273 142 0.1843 0.1854 REMARK 3 7 1.7422 - 1.6550 1.00 1285 143 0.1906 0.2472 REMARK 3 8 1.6550 - 1.5829 1.00 1271 141 0.2215 0.2508 REMARK 3 9 1.5829 - 1.5220 1.00 1290 142 0.2499 0.3057 REMARK 3 10 1.5220 - 1.4695 1.00 1271 142 0.2720 0.2603 REMARK 3 11 1.4695 - 1.4235 0.97 1226 136 0.3278 0.2920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 678 REMARK 3 ANGLE : 1.322 894 REMARK 3 CHIRALITY : 0.094 98 REMARK 3 PLANARITY : 0.007 116 REMARK 3 DIHEDRAL : 12.594 240 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 152.9831 166.8077 232.3668 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2043 REMARK 3 T33: 0.2711 T12: 0.0059 REMARK 3 T13: 0.0030 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.2883 L22: 0.6058 REMARK 3 L33: 0.7450 L12: 0.2062 REMARK 3 L13: -0.3853 L23: -0.6016 REMARK 3 S TENSOR REMARK 3 S11: 0.2610 S12: 0.0056 S13: 0.0688 REMARK 3 S21: -0.0664 S22: -0.2381 S23: -0.3195 REMARK 3 S31: -0.0994 S32: 0.0655 S33: 0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 147.5730 161.5910 235.7609 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.1902 REMARK 3 T33: 0.1970 T12: 0.0140 REMARK 3 T13: -0.0205 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.0472 L22: 1.5031 REMARK 3 L33: 1.0841 L12: -0.3602 REMARK 3 L13: 0.1422 L23: -1.2633 REMARK 3 S TENSOR REMARK 3 S11: 0.2767 S12: 0.1666 S13: -0.0276 REMARK 3 S21: 0.0092 S22: -0.1241 S23: 0.0149 REMARK 3 S31: 0.1770 S32: 0.1763 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.7149 161.7506 239.6866 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.2241 REMARK 3 T33: 0.2189 T12: 0.0017 REMARK 3 T13: -0.0156 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.6819 L22: 0.4413 REMARK 3 L33: 1.4301 L12: 0.4616 REMARK 3 L13: -0.0642 L23: -0.4713 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: -0.3264 S13: -0.0735 REMARK 3 S21: 0.1995 S22: -0.0269 S23: -0.0227 REMARK 3 S31: 0.1013 S32: -0.0842 S33: 0.0140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 126 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 143.1160 181.6251 230.1836 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.3268 REMARK 3 T33: 0.2345 T12: 0.0483 REMARK 3 T13: -0.0311 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.5549 L22: 0.5067 REMARK 3 L33: 0.3004 L12: 0.5315 REMARK 3 L13: 0.1415 L23: 0.1100 REMARK 3 S TENSOR REMARK 3 S11: 0.1987 S12: 0.0889 S13: -0.0886 REMARK 3 S21: 0.0534 S22: 0.2064 S23: -0.0433 REMARK 3 S31: 0.3765 S32: 0.7087 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 139 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 148.1539 189.2961 233.4591 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.2367 REMARK 3 T33: 0.2425 T12: 0.0502 REMARK 3 T13: 0.0534 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.5552 L22: 0.3637 REMARK 3 L33: 0.5996 L12: 0.0738 REMARK 3 L13: 0.1581 L23: 0.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.3433 S12: 0.4136 S13: 0.0012 REMARK 3 S21: 0.0100 S22: -0.0456 S23: -0.1074 REMARK 3 S31: -0.2950 S32: -0.1814 S33: 0.0012 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 152 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 153.2861 182.2655 236.5732 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.1999 REMARK 3 T33: 0.2846 T12: 0.0178 REMARK 3 T13: -0.0358 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.6330 L22: 0.3466 REMARK 3 L33: 0.4731 L12: 0.1859 REMARK 3 L13: -0.4521 L23: 0.0790 REMARK 3 S TENSOR REMARK 3 S11: 0.3802 S12: 0.2700 S13: -0.0673 REMARK 3 S21: 0.1909 S22: -0.2360 S23: -0.2786 REMARK 3 S31: 0.0055 S32: 0.1288 S33: 0.0016 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 165 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 144.3008 189.0343 240.3941 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.2453 REMARK 3 T33: 0.1727 T12: 0.0249 REMARK 3 T13: 0.0215 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.9770 L22: 1.9830 REMARK 3 L33: 1.4847 L12: 2.7011 REMARK 3 L13: -0.8225 L23: 0.2311 REMARK 3 S TENSOR REMARK 3 S11: -0.5672 S12: 0.3521 S13: 0.5833 REMARK 3 S21: -0.1565 S22: 0.2235 S23: 0.0930 REMARK 3 S31: -0.5219 S32: -0.2687 S33: -0.8609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 33.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS TRIS, PEG MME 200, PEG 600, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.67250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.03500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.67250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 330 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 170 REMARK 465 PRO A 171 REMARK 465 PHE A 172 REMARK 465 GLY A 173 REMARK 465 HIS A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLU A 177 REMARK 465 GLY A 178 REMARK 465 PHE A 179 REMARK 465 SER A 180 REMARK 465 SER D 170 REMARK 465 PRO D 171 REMARK 465 PHE D 172 REMARK 465 GLY D 173 REMARK 465 HIS D 174 REMARK 465 LEU D 175 REMARK 465 SER D 176 REMARK 465 GLU D 177 REMARK 465 GLY D 178 REMARK 465 PHE D 179 REMARK 465 SER D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 324 O HOH D 333 1.82 REMARK 500 O HOH D 318 O HOH D 319 1.89 REMARK 500 O PRO A 146 O HOH A 301 1.95 REMARK 500 O PRO D 146 O HOH D 301 1.97 REMARK 500 O HOH D 309 O HOH D 335 1.99 REMARK 500 O HOH A 305 O HOH A 306 2.07 REMARK 500 OD1 ASP D 129 O HOH D 302 2.10 REMARK 500 OD1 ASP D 149 O HOH D 303 2.12 REMARK 500 O ARG D 161 O HOH D 304 2.17 REMARK 500 O HOH D 325 O HOH D 333 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 341 O HOH D 338 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 131 SG 105.6 REMARK 620 3 CYS A 151 SG 113.1 111.8 REMARK 620 4 CYS A 154 SG 106.7 107.0 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 142 SG REMARK 620 2 CYS A 145 SG 119.0 REMARK 620 3 HIS A 160 NE2 116.1 107.6 REMARK 620 4 HIS A 163 ND1 104.4 104.8 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 128 SG REMARK 620 2 CYS D 131 SG 108.2 REMARK 620 3 CYS D 151 SG 112.2 111.1 REMARK 620 4 CYS D 154 SG 108.4 105.0 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 142 SG REMARK 620 2 CYS D 145 SG 119.3 REMARK 620 3 HIS D 160 NE2 111.0 107.1 REMARK 620 4 HIS D 163 ND1 105.3 106.8 106.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 202 DBREF 5YP7 A 126 180 UNP Q13501 SQSTM_HUMAN 126 180 DBREF 5YP7 D 126 180 UNP Q13501 SQSTM_HUMAN 126 180 SEQRES 1 A 55 VAL ILE CYS ASP GLY CYS ASN GLY PRO VAL VAL GLY THR SEQRES 2 A 55 ARG TYR LYS CYS SER VAL CYS PRO ASP TYR ASP LEU CYS SEQRES 3 A 55 SER VAL CYS GLU GLY LYS GLY LEU HIS ARG GLY HIS THR SEQRES 4 A 55 LYS LEU ALA PHE PRO SER PRO PHE GLY HIS LEU SER GLU SEQRES 5 A 55 GLY PHE SER SEQRES 1 D 55 VAL ILE CYS ASP GLY CYS ASN GLY PRO VAL VAL GLY THR SEQRES 2 D 55 ARG TYR LYS CYS SER VAL CYS PRO ASP TYR ASP LEU CYS SEQRES 3 D 55 SER VAL CYS GLU GLY LYS GLY LEU HIS ARG GLY HIS THR SEQRES 4 D 55 LYS LEU ALA PHE PRO SER PRO PHE GLY HIS LEU SER GLU SEQRES 5 D 55 GLY PHE SER HET ZN A 201 1 HET ZN A 202 1 HET ZN D 201 1 HET ZN D 202 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *85(H2 O) HELIX 1 AA1 CYS A 151 LYS A 157 1 7 HELIX 2 AA2 CYS D 151 LYS D 157 1 7 SHEET 1 AA1 3 ASP A 149 LEU A 150 0 SHEET 2 AA1 3 ARG A 139 CYS A 142 -1 N TYR A 140 O LEU A 150 SHEET 3 AA1 3 LYS A 165 PHE A 168 -1 O LEU A 166 N LYS A 141 SHEET 1 AA2 3 ASP D 149 LEU D 150 0 SHEET 2 AA2 3 ARG D 139 CYS D 142 -1 N TYR D 140 O LEU D 150 SHEET 3 AA2 3 LYS D 165 PHE D 168 -1 O PHE D 168 N ARG D 139 LINK SG CYS A 128 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 131 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 142 ZN ZN A 202 1555 1555 2.25 LINK SG CYS A 145 ZN ZN A 202 1555 1555 2.31 LINK SG CYS A 151 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 154 ZN ZN A 201 1555 1555 2.29 LINK NE2 HIS A 160 ZN ZN A 202 1555 1555 1.97 LINK ND1 HIS A 163 ZN ZN A 202 1555 1555 2.08 LINK SG CYS D 128 ZN ZN D 201 1555 1555 2.40 LINK SG CYS D 131 ZN ZN D 201 1555 1555 2.28 LINK SG CYS D 142 ZN ZN D 202 1555 1555 2.26 LINK SG CYS D 145 ZN ZN D 202 1555 1555 2.30 LINK SG CYS D 151 ZN ZN D 201 1555 1555 2.40 LINK SG CYS D 154 ZN ZN D 201 1555 1555 2.29 LINK NE2 HIS D 160 ZN ZN D 202 1555 1555 2.05 LINK ND1 HIS D 163 ZN ZN D 202 1555 1555 2.13 SITE 1 AC1 4 CYS A 128 CYS A 131 CYS A 151 CYS A 154 SITE 1 AC2 4 CYS A 142 CYS A 145 HIS A 160 HIS A 163 SITE 1 AC3 4 CYS D 128 CYS D 131 CYS D 151 CYS D 154 SITE 1 AC4 4 CYS D 142 CYS D 145 HIS D 160 HIS D 163 CRYST1 34.749 43.345 54.070 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018495 0.00000