HEADER HYDROLASE 01-NOV-17 5YPJ TITLE MYCOBACTERIUM TUBERCULOSIS METHIONINE AMINOPEPTIDASE TYPE 1C (C105N TITLE 2 MUTANT). COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: METAP,PEPTIDASE M; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25177 / SOURCE 3 H37RA); SOURCE 4 ORGANISM_TAXID: 419947; SOURCE 5 STRAIN: ATCC 25177 / H37RA; SOURCE 6 GENE: MAPB, MAP, MRA_2886; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.B.SANDEEP,A.ADDLAGATTA REVDAT 4 22-NOV-23 5YPJ 1 LINK REVDAT 3 11-MAR-20 5YPJ 1 JRNL REVDAT 2 20-NOV-19 5YPJ 1 LINK REVDAT 1 07-NOV-18 5YPJ 0 JRNL AUTH S.C.BALA,N.HAQUE,V.PILLALAMARRI,R.REDDI,R.KASHYAP, JRNL AUTH 2 A.K.MARAPAKA,A.ADDLAGATTA JRNL TITL DISCOVERY OF A NEW CLASS OF TYPE 1 METHIONINE JRNL TITL 2 AMINOPEPTIDASES THAT HAVE RELAXED SUBSTRATE SPECIFICITY. JRNL REF INT.J.BIOL.MACROMOL. V. 129 523 2019 JRNL REFN ISSN 0141-8130 JRNL PMID 30763644 JRNL DOI 10.1016/J.IJBIOMAC.2019.02.055 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.025 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2209 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2081 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3024 ; 1.874 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4782 ; 1.079 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 6.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;40.823 ;23.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;15.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.471 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2525 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5YPJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO 2.3.1 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK 2.2.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17832 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 28.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-2000 REMARK 200 STARTING MODEL: 1YJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 27% PEG3350, 3% GLYCEROL, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.26800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 161 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 200 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 200 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 262 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 -111.89 51.44 REMARK 500 GLU A 238 54.92 -148.04 REMARK 500 THR A 277 -9.65 -140.51 REMARK 500 THR A 283 37.31 -97.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 109 O REMARK 620 2 VAL A 111 O 91.0 REMARK 620 3 THR A 265 O 74.8 116.8 REMARK 620 4 HOH A 538 O 147.9 90.1 76.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 302 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 131 OD2 58.3 REMARK 620 3 ASP A 142 OD1 94.5 152.7 REMARK 620 4 GLU A 269 OE2 101.0 95.1 89.7 REMARK 620 5 HOH A 486 O 146.9 91.2 115.3 93.7 REMARK 620 6 HOH A 502 O 82.1 89.4 86.7 175.4 85.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD2 REMARK 620 2 HIS A 205 NE2 88.7 REMARK 620 3 GLU A 238 OE2 164.5 88.3 REMARK 620 4 GLU A 269 OE1 87.1 129.7 83.1 REMARK 620 5 HOH A 486 O 95.2 124.0 99.0 106.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 DBREF 5YPJ A 1 285 UNP A5U6L5 A5U6L5_MYCTA 1 285 SEQADV 5YPJ MET A -33 UNP A5U6L5 INITIATING METHIONINE SEQADV 5YPJ GLY A -32 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -31 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -30 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -29 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -28 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -27 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -26 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -25 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -24 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -23 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -22 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -21 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ LEU A -20 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ VAL A -19 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ PRO A -18 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ ARG A -17 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -16 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -15 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ HIS A -14 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ MET A -13 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ ALA A -12 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A -11 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ MET A -10 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ THR A -9 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -8 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -7 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLN A -6 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLN A -5 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ MET A -4 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -3 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ ARG A -2 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ GLY A -1 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ SER A 0 UNP A5U6L5 EXPRESSION TAG SEQADV 5YPJ ASN A 105 UNP A5U6L5 CYS 105 ENGINEERED MUTATION SEQADV 5YPJ ALA A 284 UNP A5U6L5 CYS 284 ENGINEERED MUTATION SEQRES 1 A 319 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 319 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 319 GLY GLN GLN MET GLY ARG GLY SER MET PRO SER ARG THR SEQRES 4 A 319 ALA LEU SER PRO GLY VAL LEU SER PRO THR ARG PRO VAL SEQRES 5 A 319 PRO ASN TRP ILE ALA ARG PRO GLU TYR VAL GLY LYS PRO SEQRES 6 A 319 ALA ALA GLN GLU GLY SER GLU PRO TRP VAL GLN THR PRO SEQRES 7 A 319 GLU VAL ILE GLU LYS MET ARG VAL ALA GLY ARG ILE ALA SEQRES 8 A 319 ALA GLY ALA LEU ALA GLU ALA GLY LYS ALA VAL ALA PRO SEQRES 9 A 319 GLY VAL THR THR ASP GLU LEU ASP ARG ILE ALA HIS GLU SEQRES 10 A 319 TYR LEU VAL ASP ASN GLY ALA TYR PRO SER THR LEU GLY SEQRES 11 A 319 TYR LYS GLY PHE PRO LYS SER CYS ASN THR SER LEU ASN SEQRES 12 A 319 GLU VAL ILE CYS HIS GLY ILE PRO ASP SER THR VAL ILE SEQRES 13 A 319 THR ASP GLY ASP ILE VAL ASN ILE ASP VAL THR ALA TYR SEQRES 14 A 319 ILE GLY GLY VAL HIS GLY ASP THR ASN ALA THR PHE PRO SEQRES 15 A 319 ALA GLY ASP VAL ALA ASP GLU HIS ARG LEU LEU VAL ASP SEQRES 16 A 319 ARG THR ARG GLU ALA THR MET ARG ALA ILE ASN THR VAL SEQRES 17 A 319 LYS PRO GLY ARG ALA LEU SER VAL ILE GLY ARG VAL ILE SEQRES 18 A 319 GLU SER TYR ALA ASN ARG PHE GLY TYR ASN VAL VAL ARG SEQRES 19 A 319 ASP PHE THR GLY HIS GLY ILE GLY THR THR PHE HIS ASN SEQRES 20 A 319 GLY LEU VAL VAL LEU HIS TYR ASP GLN PRO ALA VAL GLU SEQRES 21 A 319 THR ILE MET GLN PRO GLY MET THR PHE THR ILE GLU PRO SEQRES 22 A 319 MET ILE ASN LEU GLY ALA LEU ASP TYR GLU ILE TRP ASP SEQRES 23 A 319 ASP GLY TRP THR VAL VAL THR LYS ASP ARG LYS TRP THR SEQRES 24 A 319 ALA GLN PHE GLU HIS THR LEU LEU VAL THR ASP THR GLY SEQRES 25 A 319 VAL GLU ILE LEU THR ALA LEU HET CO A 301 1 HET CO A 302 1 HET CL A 303 1 HET NA A 304 1 HETNAM CO COBALT (II) ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CO 2(CO 2+) FORMUL 4 CL CL 1- FORMUL 5 NA NA 1+ FORMUL 6 HOH *147(H2 O) HELIX 1 AA1 THR A 43 ALA A 67 1 25 HELIX 2 AA2 THR A 73 ASN A 88 1 16 HELIX 3 AA3 ALA A 153 ASN A 172 1 20 HELIX 4 AA4 SER A 181 PHE A 194 1 14 SHEET 1 AA1 3 TYR A 91 PRO A 92 0 SHEET 2 AA1 3 ILE A 127 ILE A 136 -1 O TYR A 135 N TYR A 91 SHEET 3 AA1 3 ASN A 105 LEU A 108 -1 N SER A 107 O ASN A 129 SHEET 1 AA2 3 TYR A 91 PRO A 92 0 SHEET 2 AA2 3 ILE A 127 ILE A 136 -1 O TYR A 135 N TYR A 91 SHEET 3 AA2 3 VAL A 139 PRO A 148 -1 O PHE A 147 N VAL A 128 SHEET 1 AA3 3 VAL A 111 CYS A 113 0 SHEET 2 AA3 3 VAL A 257 THR A 259 -1 O VAL A 257 N CYS A 113 SHEET 3 AA3 3 TYR A 248 ILE A 250 -1 N GLU A 249 O VAL A 258 SHEET 1 AA4 3 ASN A 197 VAL A 198 0 SHEET 2 AA4 3 MET A 240 ASN A 242 -1 O ASN A 242 N ASN A 197 SHEET 3 AA4 3 THR A 265 GLN A 267 -1 O ALA A 266 N ILE A 241 SHEET 1 AA5 2 GLY A 204 HIS A 205 0 SHEET 2 AA5 2 VAL A 216 VAL A 217 -1 O VAL A 217 N GLY A 204 SHEET 1 AA6 3 THR A 234 ILE A 237 0 SHEET 2 AA6 3 HIS A 270 VAL A 274 -1 O LEU A 272 N PHE A 235 SHEET 3 AA6 3 VAL A 279 ILE A 281 -1 O GLU A 280 N LEU A 273 LINK O ASN A 109 NA NA A 304 1555 1555 2.81 LINK O VAL A 111 NA NA A 304 1555 1555 2.70 LINK OD1 ASP A 131 CO CO A 302 1555 1555 2.13 LINK OD2 ASP A 131 CO CO A 302 1555 1555 2.33 LINK OD2 ASP A 142 CO CO A 301 1555 1555 2.15 LINK OD1 ASP A 142 CO CO A 302 1555 1555 2.05 LINK NE2 HIS A 205 CO CO A 301 1555 1555 2.13 LINK OE2 GLU A 238 CO CO A 301 1555 1555 2.22 LINK O THR A 265 NA NA A 304 1555 1555 2.71 LINK OE1 GLU A 269 CO CO A 301 1555 1555 2.01 LINK OE2 GLU A 269 CO CO A 302 1555 1555 2.06 LINK CO CO A 301 O HOH A 486 1555 1555 2.02 LINK CO CO A 302 O HOH A 486 1555 1555 1.99 LINK CO CO A 302 O HOH A 502 1555 1555 2.23 LINK NA NA A 304 O HOH A 538 1555 1555 2.81 SITE 1 AC1 7 ASP A 142 HIS A 205 THR A 236 GLU A 238 SITE 2 AC1 7 GLU A 269 CO A 302 HOH A 486 SITE 1 AC2 6 ASP A 131 ASP A 142 GLU A 269 CO A 301 SITE 2 AC2 6 HOH A 486 HOH A 502 SITE 1 AC3 6 THR A 15 ARG A 16 LEU A 95 PRO A 101 SITE 2 AC3 6 LYS A 102 HOH A 416 SITE 1 AC4 6 SER A 107 LEU A 108 ASN A 109 VAL A 111 SITE 2 AC4 6 THR A 265 HOH A 538 CRYST1 49.285 48.536 56.353 90.00 95.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020290 0.000000 0.001774 0.00000 SCALE2 0.000000 0.020603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017813 0.00000