HEADER TRANSFERASE 14-NOV-17 5YSQ TITLE SULFATE-COMPLEX STRUCTURE OF A PYROPHOSPHATE-DEPENDENT KINASE IN THE TITLE 2 RIBOKINASE FAMILY PROVIDES INSIGHT INTO THE DONOR-BINDING MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TM0415; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0415; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGATA,M.FUJIHASHI,K.MIKI REVDAT 2 22-NOV-23 5YSQ 1 REMARK REVDAT 1 16-MAY-18 5YSQ 0 JRNL AUTH R.NAGATA,M.FUJIHASHI,T.SATO,H.ATOMI,K.MIKI JRNL TITL IDENTIFICATION OF A PYROPHOSPHATE-DEPENDENT KINASE AND ITS JRNL TITL 2 DONOR SELECTIVITY DETERMINANTS. JRNL REF NAT COMMUN V. 9 1765 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29720581 JRNL DOI 10.1038/S41467-018-04201-Z REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 75813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4017 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.043 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4660 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4290 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6352 ; 1.695 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9898 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 6.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;31.921 ;22.834 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;12.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;13.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 728 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5297 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1028 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2374 ; 0.399 ; 0.743 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2373 ; 0.399 ; 0.743 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3004 ; 0.671 ; 1.112 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3005 ; 0.671 ; 1.113 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2286 ; 0.557 ; 0.806 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2271 ; 0.556 ; 0.804 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3322 ; 0.854 ; 1.184 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5117 ; 2.531 ; 9.133 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5083 ; 2.499 ; 8.973 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1787 -4.4245 30.4359 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0164 REMARK 3 T33: 0.1447 T12: 0.0063 REMARK 3 T13: 0.0318 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.1365 L22: 1.4748 REMARK 3 L33: 2.9897 L12: -0.3260 REMARK 3 L13: 0.6536 L23: -0.6595 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.1174 S13: -0.0047 REMARK 3 S21: -0.1122 S22: -0.0574 S23: -0.3617 REMARK 3 S31: 0.1239 S32: 0.1585 S33: 0.0492 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1388 -1.0031 38.6569 REMARK 3 T TENSOR REMARK 3 T11: 0.0145 T22: 0.0442 REMARK 3 T33: 0.0660 T12: 0.0109 REMARK 3 T13: -0.0091 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.9967 L22: 6.7820 REMARK 3 L33: 2.3683 L12: 1.1089 REMARK 3 L13: 0.0663 L23: -0.8222 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: 0.1113 S13: -0.0777 REMARK 3 S21: -0.0614 S22: 0.0828 S23: -0.1787 REMARK 3 S31: 0.0185 S32: -0.1260 S33: 0.0117 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 285 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 RESIDUE RANGE : A 302 A 302 REMARK 3 RESIDUE RANGE : A 303 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -0.6107 0.0801 27.0757 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.0557 REMARK 3 T33: 0.0799 T12: 0.0115 REMARK 3 T13: 0.0153 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.8748 L22: 1.5119 REMARK 3 L33: 1.0493 L12: -0.2017 REMARK 3 L13: 0.2545 L23: 0.1654 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: -0.0200 S13: 0.0310 REMARK 3 S21: -0.0968 S22: -0.0602 S23: 0.0812 REMARK 3 S31: -0.0205 S32: -0.1612 S33: 0.0739 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7499 -29.0509 2.7638 REMARK 3 T TENSOR REMARK 3 T11: 0.0938 T22: 0.0931 REMARK 3 T33: 0.0758 T12: 0.0165 REMARK 3 T13: 0.0199 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 1.2181 L22: 1.7848 REMARK 3 L33: 1.5223 L12: -0.2003 REMARK 3 L13: 0.2588 L23: -0.2660 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0516 S13: 0.0179 REMARK 3 S21: -0.1487 S22: 0.0159 S23: -0.1548 REMARK 3 S31: -0.0502 S32: 0.0541 S33: 0.0059 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 192 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 RESIDUE RANGE : B 302 B 302 REMARK 3 RESIDUE RANGE : B 303 B 303 REMARK 3 ORIGIN FOR THE GROUP (A): -24.8961 -27.9906 15.9042 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.0874 REMARK 3 T33: 0.0958 T12: 0.0265 REMARK 3 T13: 0.0283 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.9185 L22: 1.5286 REMARK 3 L33: 1.4374 L12: -0.3663 REMARK 3 L13: 0.1017 L23: 0.1037 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.0882 S13: -0.0517 REMARK 3 S21: 0.1341 S22: 0.0498 S23: 0.1334 REMARK 3 S31: -0.0027 S32: -0.1070 S33: -0.0207 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 193 B 209 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4575 -27.7539 26.4845 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1280 REMARK 3 T33: 0.0700 T12: 0.0371 REMARK 3 T13: -0.0045 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 5.9990 L22: 4.8830 REMARK 3 L33: 3.0005 L12: 2.0154 REMARK 3 L13: 0.1329 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: -0.3365 S13: 0.0198 REMARK 3 S21: 0.2486 S22: -0.1182 S23: 0.2706 REMARK 3 S31: 0.0272 S32: -0.1678 S33: 0.0431 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 210 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8410 -31.1125 21.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.1024 T22: 0.1086 REMARK 3 T33: 0.1025 T12: 0.0199 REMARK 3 T13: -0.0322 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.4295 L22: 1.4808 REMARK 3 L33: 1.2454 L12: 0.6298 REMARK 3 L13: -0.6593 L23: -0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: -0.1122 S13: -0.1198 REMARK 3 S21: 0.1314 S22: 0.0397 S23: -0.0167 REMARK 3 S31: -0.0926 S32: 0.0350 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 265 B 280 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0414 -29.7793 9.8226 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.1379 REMARK 3 T33: 0.1806 T12: -0.0225 REMARK 3 T13: 0.0022 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.2095 L22: 6.0696 REMARK 3 L33: 3.5612 L12: -2.4149 REMARK 3 L13: 0.0994 L23: -0.3440 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: 0.0850 S13: -0.3274 REMARK 3 S21: -0.0941 S22: -0.1171 S23: -0.5550 REMARK 3 S31: 0.1215 S32: 0.5914 S33: -0.0287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5YSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 715 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.08 REMARK 200 STARTING MODEL: 1VK4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.17700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 SER A 82 REMARK 465 ASP A 83 REMARK 465 PRO A 84 REMARK 465 ASP A 85 REMARK 465 THR A 86 REMARK 465 PHE A 286 REMARK 465 SER B 281 REMARK 465 GLY B 282 REMARK 465 ASP B 283 REMARK 465 GLN B 284 REMARK 465 TYR B 285 REMARK 465 PHE B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 LYS A 40 NZ REMARK 470 LYS A 42 CE NZ REMARK 470 GLU A 50 OE1 OE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ARG A 72 CZ NH1 NH2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ARG A 131 CD NE CZ NH1 NH2 REMARK 470 LYS A 151 CE NZ REMARK 470 ARG A 155 NH1 NH2 REMARK 470 LYS A 162 NZ REMARK 470 LYS A 165 NZ REMARK 470 ARG A 175 NE CZ NH1 NH2 REMARK 470 LYS A 199 CE NZ REMARK 470 GLU A 227 OE1 OE2 REMARK 470 LYS A 247 CD CE NZ REMARK 470 LYS A 248 CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 253 NZ REMARK 470 LYS A 256 NZ REMARK 470 ASP A 283 OD1 OD2 REMARK 470 LYS B 18 CD CE NZ REMARK 470 LYS B 40 CD CE NZ REMARK 470 ARG B 49 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 69 CE NZ REMARK 470 GLU B 77 OE1 REMARK 470 SER B 82 OG REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 GLU B 88 OE1 OE2 REMARK 470 ILE B 106 CD1 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 132 CD CE NZ REMARK 470 VAL B 133 CG1 REMARK 470 LYS B 151 CE NZ REMARK 470 GLU B 161 CD OE1 OE2 REMARK 470 LYS B 162 NZ REMARK 470 LYS B 171 CE NZ REMARK 470 ARG B 175 NE CZ NH1 NH2 REMARK 470 ARG B 187 NH1 NH2 REMARK 470 LYS B 199 NZ REMARK 470 GLU B 218 CD OE1 OE2 REMARK 470 ARG B 222 NE CZ NH1 NH2 REMARK 470 GLU B 227 CD OE1 OE2 REMARK 470 ARG B 229 NE CZ NH1 NH2 REMARK 470 LYS B 247 CE NZ REMARK 470 LYS B 248 NZ REMARK 470 GLU B 252 CD OE1 OE2 REMARK 470 LYS B 253 CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 ARG B 274 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 277 CG CD1 CD2 REMARK 470 GLU B 278 CD OE1 OE2 REMARK 470 ILE B 280 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 150 -34.87 78.55 REMARK 500 GLU B 150 -11.60 69.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue INS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue INS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 DBREF 5YSQ A 1 286 UNP Q9WYP6 Q9WYP6_THEMA 1 286 DBREF 5YSQ B 1 286 UNP Q9WYP6 Q9WYP6_THEMA 1 286 SEQRES 1 A 286 MET ILE THR PHE ILE GLY HIS VAL SER LYS ASP VAL ASN SEQRES 2 A 286 VAL VAL ASP GLY LYS ARG GLU ILE ALA TYR GLY GLY GLY SEQRES 3 A 286 VAL VAL MET GLY ALA ILE THR SER SER LEU LEU GLY VAL SEQRES 4 A 286 LYS THR LYS VAL ILE THR LYS CYS THR ARG GLU ASP VAL SEQRES 5 A 286 SER LYS PHE SER PHE LEU ARG ASP ASN GLY VAL GLU VAL SEQRES 6 A 286 VAL PHE LEU LYS SER PRO ARG THR THR SER ILE GLU ASN SEQRES 7 A 286 ARG TYR GLY SER ASP PRO ASP THR ARG GLU SER PHE LEU SEQRES 8 A 286 ILE SER ALA ALA ASP PRO PHE THR GLU SER ASP LEU ALA SEQRES 9 A 286 PHE ILE GLU GLY GLU ALA VAL HIS ILE ASN PRO LEU TRP SEQRES 10 A 286 TYR GLY GLU PHE PRO GLU ASP LEU ILE PRO VAL LEU ARG SEQRES 11 A 286 ARG LYS VAL MET PHE LEU SER ALA ASP ALA GLN GLY PHE SEQRES 12 A 286 VAL ARG VAL PRO GLU ASN GLU LYS LEU VAL TYR ARG ASP SEQRES 13 A 286 TRP GLU MET LYS GLU LYS TYR LEU LYS TYR LEU ASP LEU SEQRES 14 A 286 PHE LYS VAL ASP SER ARG GLU ALA GLU THR LEU THR GLY SEQRES 15 A 286 THR ASN ASP LEU ARG GLU SER CYS ARG ILE ILE ARG SER SEQRES 16 A 286 PHE GLY ALA LYS ILE ILE LEU ALA THR HIS ALA SER GLY SEQRES 17 A 286 VAL ILE VAL PHE ASP GLY ASN PHE TYR GLU ALA SER PHE SEQRES 18 A 286 ARG SER TRP SER LEU GLU GLY ARG THR GLY ARG GLY ASP SEQRES 19 A 286 THR CYS THR ALA ALA PHE LEU VAL GLY PHE VAL PHE LYS SEQRES 20 A 286 LYS MET SER ILE GLU LYS ALA THR LYS PHE ALA ALA ALA SEQRES 21 A 286 VAL THR SER VAL LYS MET ARG HIS PRO GLY PRO LEU ARG SEQRES 22 A 286 ARG GLU ASP LEU GLU ALA ILE SER GLY ASP GLN TYR PHE SEQRES 1 B 286 MET ILE THR PHE ILE GLY HIS VAL SER LYS ASP VAL ASN SEQRES 2 B 286 VAL VAL ASP GLY LYS ARG GLU ILE ALA TYR GLY GLY GLY SEQRES 3 B 286 VAL VAL MET GLY ALA ILE THR SER SER LEU LEU GLY VAL SEQRES 4 B 286 LYS THR LYS VAL ILE THR LYS CYS THR ARG GLU ASP VAL SEQRES 5 B 286 SER LYS PHE SER PHE LEU ARG ASP ASN GLY VAL GLU VAL SEQRES 6 B 286 VAL PHE LEU LYS SER PRO ARG THR THR SER ILE GLU ASN SEQRES 7 B 286 ARG TYR GLY SER ASP PRO ASP THR ARG GLU SER PHE LEU SEQRES 8 B 286 ILE SER ALA ALA ASP PRO PHE THR GLU SER ASP LEU ALA SEQRES 9 B 286 PHE ILE GLU GLY GLU ALA VAL HIS ILE ASN PRO LEU TRP SEQRES 10 B 286 TYR GLY GLU PHE PRO GLU ASP LEU ILE PRO VAL LEU ARG SEQRES 11 B 286 ARG LYS VAL MET PHE LEU SER ALA ASP ALA GLN GLY PHE SEQRES 12 B 286 VAL ARG VAL PRO GLU ASN GLU LYS LEU VAL TYR ARG ASP SEQRES 13 B 286 TRP GLU MET LYS GLU LYS TYR LEU LYS TYR LEU ASP LEU SEQRES 14 B 286 PHE LYS VAL ASP SER ARG GLU ALA GLU THR LEU THR GLY SEQRES 15 B 286 THR ASN ASP LEU ARG GLU SER CYS ARG ILE ILE ARG SER SEQRES 16 B 286 PHE GLY ALA LYS ILE ILE LEU ALA THR HIS ALA SER GLY SEQRES 17 B 286 VAL ILE VAL PHE ASP GLY ASN PHE TYR GLU ALA SER PHE SEQRES 18 B 286 ARG SER TRP SER LEU GLU GLY ARG THR GLY ARG GLY ASP SEQRES 19 B 286 THR CYS THR ALA ALA PHE LEU VAL GLY PHE VAL PHE LYS SEQRES 20 B 286 LYS MET SER ILE GLU LYS ALA THR LYS PHE ALA ALA ALA SEQRES 21 B 286 VAL THR SER VAL LYS MET ARG HIS PRO GLY PRO LEU ARG SEQRES 22 B 286 ARG GLU ASP LEU GLU ALA ILE SER GLY ASP GLN TYR PHE HET INS A 301 12 HET SO4 A 302 5 HET SO4 A 303 5 HET INS B 301 12 HET SO4 B 302 5 HET SO4 B 303 5 HETNAM INS 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE HETNAM SO4 SULFATE ION HETSYN INS MYO-INOSITOL FORMUL 3 INS 2(C6 H12 O6) FORMUL 4 SO4 4(O4 S 2-) FORMUL 9 HOH *258(H2 O) HELIX 1 AA1 GLY A 25 LEU A 37 1 13 HELIX 2 AA2 THR A 48 PHE A 55 5 8 HELIX 3 AA3 SER A 56 ASN A 61 1 6 HELIX 4 AA4 THR A 99 ALA A 104 5 6 HELIX 5 AA5 ASP A 124 ARG A 131 1 8 HELIX 6 AA6 ALA A 140 VAL A 144 1 5 HELIX 7 AA7 MET A 159 LEU A 164 1 6 HELIX 8 AA8 LYS A 165 LEU A 167 5 3 HELIX 9 AA9 SER A 174 GLY A 182 1 9 HELIX 10 AB1 ASP A 185 PHE A 196 1 12 HELIX 11 AB2 GLY A 231 PHE A 246 1 16 HELIX 12 AB3 SER A 250 MET A 266 1 17 HELIX 13 AB4 ARG A 273 ILE A 280 5 8 HELIX 14 AB5 SER A 281 TYR A 285 5 5 HELIX 15 AB6 VAL B 27 LEU B 37 1 11 HELIX 16 AB7 ASP B 51 GLY B 62 5 12 HELIX 17 AB8 ASP B 83 ARG B 87 5 5 HELIX 18 AB9 THR B 99 ILE B 106 5 8 HELIX 19 AC1 PRO B 122 ASP B 124 5 3 HELIX 20 AC2 LEU B 125 VAL B 133 1 9 HELIX 21 AC3 ALA B 140 VAL B 144 1 5 HELIX 22 AC4 MET B 159 LEU B 164 1 6 HELIX 23 AC5 LYS B 165 LEU B 167 5 3 HELIX 24 AC6 SER B 174 GLY B 182 1 9 HELIX 25 AC7 ASP B 185 PHE B 196 1 12 HELIX 26 AC8 LEU B 226 THR B 230 1 5 HELIX 27 AC9 GLY B 231 PHE B 246 1 16 HELIX 28 AD1 SER B 250 MET B 266 1 17 HELIX 29 AD2 ARG B 273 ILE B 280 5 8 SHEET 1 AA1 9 GLU A 64 LYS A 69 0 SHEET 2 AA1 9 THR A 41 CYS A 47 1 N THR A 45 O LEU A 68 SHEET 3 AA1 9 ILE A 2 ILE A 5 1 N PHE A 4 O LYS A 42 SHEET 4 AA1 9 ALA A 110 ILE A 113 1 O HIS A 112 N THR A 3 SHEET 5 AA1 9 PHE A 135 ASP A 139 1 O SER A 137 N ILE A 113 SHEET 6 AA1 9 LEU A 169 ASP A 173 1 O LYS A 171 N ALA A 138 SHEET 7 AA1 9 ILE A 201 HIS A 205 1 O LEU A 202 N VAL A 172 SHEET 8 AA1 9 GLY A 208 PHE A 212 -1 O ILE A 210 N ALA A 203 SHEET 9 AA1 9 PHE A 216 SER A 220 -1 O TYR A 217 N VAL A 211 SHEET 1 AA2 4 LYS A 18 GLY A 24 0 SHEET 2 AA2 4 SER A 9 VAL A 15 -1 N ASP A 11 O ALA A 22 SHEET 3 AA2 4 THR A 74 TYR A 80 1 O ASN A 78 N VAL A 14 SHEET 4 AA2 4 GLU A 88 SER A 93 -1 O GLU A 88 N ARG A 79 SHEET 1 AA3 2 ARG A 145 GLU A 148 0 SHEET 2 AA3 2 LYS A 151 TYR A 154 -1 O VAL A 153 N VAL A 146 SHEET 1 AA4 2 SER A 223 SER A 225 0 SHEET 2 AA4 2 SER B 223 SER B 225 -1 O TRP B 224 N TRP A 224 SHEET 1 AA5 9 GLU B 64 LYS B 69 0 SHEET 2 AA5 9 THR B 41 CYS B 47 1 N THR B 45 O LEU B 68 SHEET 3 AA5 9 ILE B 2 ILE B 5 1 N PHE B 4 O LYS B 42 SHEET 4 AA5 9 ALA B 110 ILE B 113 1 O HIS B 112 N ILE B 5 SHEET 5 AA5 9 PHE B 135 ASP B 139 1 O SER B 137 N ILE B 113 SHEET 6 AA5 9 LEU B 169 ASP B 173 1 O LYS B 171 N ALA B 138 SHEET 7 AA5 9 ILE B 200 HIS B 205 1 O THR B 204 N VAL B 172 SHEET 8 AA5 9 GLY B 208 PHE B 212 -1 O ILE B 210 N ALA B 203 SHEET 9 AA5 9 PHE B 216 SER B 220 -1 O TYR B 217 N VAL B 211 SHEET 1 AA6 4 LYS B 18 ALA B 22 0 SHEET 2 AA6 4 LYS B 10 VAL B 15 -1 N ASN B 13 O GLU B 20 SHEET 3 AA6 4 SER B 75 TYR B 80 1 O ASN B 78 N VAL B 14 SHEET 4 AA6 4 GLU B 88 SER B 93 -1 O GLU B 88 N ARG B 79 SHEET 1 AA7 2 ARG B 145 GLU B 148 0 SHEET 2 AA7 2 LYS B 151 TYR B 154 -1 O VAL B 153 N VAL B 146 SITE 1 AC1 13 ASP A 11 GLY A 25 GLY A 26 ILE A 76 SITE 2 AC1 13 ASN A 78 SER A 89 LEU A 116 GLN A 141 SITE 3 AC1 13 ARG A 145 THR A 230 HOH A 439 HOH A 443 SITE 4 AC1 13 HOH A 461 SITE 1 AC2 9 LYS A 171 ASP A 173 THR A 204 ARG A 229 SITE 2 AC2 9 ARG A 232 GLY A 233 HOH A 436 HOH A 443 SITE 3 AC2 9 HOH A 483 SITE 1 AC3 5 SER A 174 HIS A 205 ALA A 206 ARG A 232 SITE 2 AC3 5 HOH A 434 SITE 1 AC4 12 ASP B 11 GLY B 25 GLY B 26 ILE B 76 SITE 2 AC4 12 ASN B 78 LEU B 116 GLN B 141 ARG B 145 SITE 3 AC4 12 THR B 230 HOH B 420 HOH B 440 HOH B 450 SITE 1 AC5 7 ASP B 173 THR B 204 ARG B 232 GLY B 233 SITE 2 AC5 7 HOH B 415 HOH B 431 HOH B 450 SITE 1 AC6 5 SER B 174 HIS B 205 ALA B 206 ARG B 232 SITE 2 AC6 5 HOH B 452 CRYST1 46.745 62.354 87.979 90.00 103.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021393 0.000000 0.005322 0.00000 SCALE2 0.000000 0.016037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011713 0.00000