HEADER PROTEIN BINDING 17-NOV-17 5YT6 TITLE CRYSTAL STRUCTURE OF TAX1BP1 UBZ2 IN COMPLEX WITH MONO-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: E, A, C, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TAX1-BINDING PROTEIN 1; COMPND 7 CHAIN: F, B, D, H; COMPND 8 SYNONYM: TRAF6-BINDING PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TAX1BP1, T6BP, PRO0105; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS TAX1BP1, UBIQUITIN, COMPLEX, AUTOPHAGY RECEPTOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR L.PAN,S.HU REVDAT 3 22-NOV-23 5YT6 1 REMARK REVDAT 2 05-SEP-18 5YT6 1 JRNL REVDAT 1 11-JUL-18 5YT6 0 JRNL AUTH S.HU,Y.WANG,Y.GONG,J.LIU,Y.LI,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO RECOGNITIONS OF UBIQUITIN AND JRNL TITL 2 MYOSIN VI BY AUTOPHAGY RECEPTOR TAX1BP1. JRNL REF J. MOL. BIOL. V. 430 3283 2018 JRNL REFN ESSN 1089-8638 JRNL PMID 29940186 JRNL DOI 10.1016/J.JMB.2018.06.030 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 67619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9004 - 4.3272 0.98 2866 177 0.1806 0.2092 REMARK 3 2 4.3272 - 3.4360 0.99 2801 135 0.1712 0.2102 REMARK 3 3 3.4360 - 3.0021 0.99 2774 136 0.2029 0.2256 REMARK 3 4 3.0021 - 2.7278 0.99 2726 163 0.2119 0.2259 REMARK 3 5 2.7278 - 2.5324 0.99 2732 137 0.2069 0.2161 REMARK 3 6 2.5324 - 2.3831 1.00 2745 142 0.2043 0.2249 REMARK 3 7 2.3831 - 2.2638 0.99 2703 147 0.1936 0.2205 REMARK 3 8 2.2638 - 2.1653 0.99 2739 142 0.1914 0.2323 REMARK 3 9 2.1653 - 2.0820 1.00 2687 139 0.1910 0.2518 REMARK 3 10 2.0820 - 2.0101 1.00 2722 140 0.1942 0.2191 REMARK 3 11 2.0101 - 1.9473 1.00 2689 148 0.1932 0.2511 REMARK 3 12 1.9473 - 1.8916 1.00 2727 142 0.1921 0.2153 REMARK 3 13 1.8916 - 1.8419 1.00 2701 141 0.1903 0.2183 REMARK 3 14 1.8419 - 1.7969 1.00 2680 132 0.1930 0.2392 REMARK 3 15 1.7969 - 1.7561 1.00 2689 155 0.1844 0.2407 REMARK 3 16 1.7561 - 1.7187 1.00 2698 156 0.1933 0.2147 REMARK 3 17 1.7187 - 1.6843 1.00 2675 134 0.1973 0.2084 REMARK 3 18 1.6843 - 1.6525 1.00 2666 169 0.1870 0.2748 REMARK 3 19 1.6525 - 1.6230 1.00 2681 126 0.1853 0.2071 REMARK 3 20 1.6230 - 1.5955 1.00 2685 157 0.1921 0.2316 REMARK 3 21 1.5955 - 1.5698 0.98 2650 143 0.2030 0.2555 REMARK 3 22 1.5698 - 1.5456 0.95 2566 155 0.2110 0.2707 REMARK 3 23 1.5456 - 1.5229 0.91 2440 104 0.2281 0.2385 REMARK 3 24 1.5229 - 1.5015 0.79 2149 108 0.2364 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3601 REMARK 3 ANGLE : 0.900 4870 REMARK 3 CHIRALITY : 0.060 552 REMARK 3 PLANARITY : 0.006 634 REMARK 3 DIHEDRAL : 17.880 2224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97846 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS TRIS PROPANE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.35450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.93950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.46900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.93950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.35450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.46900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E -1 REMARK 465 GLY E 75 REMARK 465 GLY E 76 REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 GLY C -1 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 SER D 33 REMARK 465 VAL D 65 REMARK 465 LEU D 66 REMARK 465 ASN D 67 REMARK 465 GLY G -1 REMARK 465 GLY G 75 REMARK 465 GLY G 76 REMARK 465 LEU H 66 REMARK 465 ASN H 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 24 CG CD OE1 OE2 REMARK 470 ARG C 74 CG CD NE CZ NH1 NH2 REMARK 470 TRP D 34 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP D 34 CZ3 CH2 REMARK 470 GLN D 43 CG CD OE1 NE2 REMARK 470 ARG G 74 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN F 64 O HOH F 201 2.01 REMARK 500 OD1 ASP B 47 O HOH B 201 2.09 REMARK 500 O HOH E 129 O HOH E 146 2.12 REMARK 500 NE2 GLN F 58 O HOH F 202 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 40 -2.94 -140.47 REMARK 500 SER B 41 15.82 59.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS F 37 SG REMARK 620 2 CYS F 40 SG 113.1 REMARK 620 3 HIS F 56 NE2 109.6 112.6 REMARK 620 4 HIS F 60 NE2 104.9 113.9 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 37 SG REMARK 620 2 CYS B 40 SG 116.5 REMARK 620 3 HIS B 56 NE2 107.7 111.8 REMARK 620 4 HIS B 60 NE2 104.4 114.6 100.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 37 SG REMARK 620 2 CYS D 40 SG 111.8 REMARK 620 3 HIS D 56 NE2 109.3 107.9 REMARK 620 4 HIS D 60 NE2 102.4 116.4 108.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS H 37 SG REMARK 620 2 CYS H 40 SG 112.8 REMARK 620 3 HIS H 56 NE2 108.5 107.0 REMARK 620 4 HIS H 60 NE2 102.5 117.2 108.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN H 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 102 DBREF 5YT6 E 1 76 UNP P0CG47 UBB_HUMAN 77 152 DBREF 5YT6 F 34 67 UNP Q86VP1 TAXB1_HUMAN 754 787 DBREF 5YT6 A 1 76 UNP P0CG47 UBB_HUMAN 77 152 DBREF 5YT6 B 34 67 UNP Q86VP1 TAXB1_HUMAN 754 787 DBREF 5YT6 C 1 76 UNP P0CG47 UBB_HUMAN 77 152 DBREF 5YT6 D 34 67 UNP Q86VP1 TAXB1_HUMAN 754 787 DBREF 5YT6 G 1 76 UNP P0CG47 UBB_HUMAN 77 152 DBREF 5YT6 H 34 67 UNP Q86VP1 TAXB1_HUMAN 754 787 SEQADV 5YT6 GLY E -1 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER E 0 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER F 33 UNP Q86VP1 EXPRESSION TAG SEQADV 5YT6 GLY A -1 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER A 0 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER B 33 UNP Q86VP1 EXPRESSION TAG SEQADV 5YT6 GLY C -1 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER C 0 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER D 33 UNP Q86VP1 EXPRESSION TAG SEQADV 5YT6 GLY G -1 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER G 0 UNP P0CG47 EXPRESSION TAG SEQADV 5YT6 SER H 33 UNP Q86VP1 EXPRESSION TAG SEQRES 1 E 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 E 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 E 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 E 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 E 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 E 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 F 35 SER TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE PRO SEQRES 2 F 35 PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN SEQRES 3 F 35 THR HIS PHE ASP GLN ASN VAL LEU ASN SEQRES 1 A 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 A 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 A 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 A 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 A 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 A 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 B 35 SER TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE PRO SEQRES 2 B 35 PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN SEQRES 3 B 35 THR HIS PHE ASP GLN ASN VAL LEU ASN SEQRES 1 C 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 C 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 C 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 C 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 D 35 SER TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE PRO SEQRES 2 D 35 PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN SEQRES 3 D 35 THR HIS PHE ASP GLN ASN VAL LEU ASN SEQRES 1 G 78 GLY SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 G 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 G 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 G 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 G 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 G 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 H 35 SER TRP LYS VAL CYS PRO MET CYS SER GLU GLN PHE PRO SEQRES 2 H 35 PRO ASP TYR ASP GLN GLN VAL PHE GLU ARG HIS VAL GLN SEQRES 3 H 35 THR HIS PHE ASP GLN ASN VAL LEU ASN HET ZN F 101 1 HET SO4 A 101 5 HET ZN B 101 1 HET ZN D 101 1 HET SO4 D 102 5 HET GOL G 101 6 HET ZN H 101 1 HET EDO H 102 4 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 9 ZN 4(ZN 2+) FORMUL 10 SO4 2(O4 S 2-) FORMUL 14 GOL C3 H8 O3 FORMUL 16 EDO C2 H6 O2 FORMUL 17 HOH *357(H2 O) HELIX 1 AA1 THR E 22 GLY E 35 1 14 HELIX 2 AA2 PRO E 37 ASP E 39 5 3 HELIX 3 AA3 LEU E 56 ASN E 60 5 5 HELIX 4 AA4 ASP F 49 HIS F 60 1 12 HELIX 5 AA5 THR A 22 GLY A 35 1 14 HELIX 6 AA6 PRO A 37 ASP A 39 5 3 HELIX 7 AA7 LEU A 56 ASN A 60 5 5 HELIX 8 AA8 ASP B 49 HIS B 60 1 12 HELIX 9 AA9 THR C 22 GLY C 35 1 14 HELIX 10 AB1 PRO C 37 ASP C 39 5 3 HELIX 11 AB2 LEU C 56 ASN C 60 5 5 HELIX 12 AB3 ASP D 49 THR D 59 1 11 HELIX 13 AB4 THR G 22 GLY G 35 1 14 HELIX 14 AB5 PRO G 37 ASP G 39 5 3 HELIX 15 AB6 LEU G 56 ASN G 60 5 5 HELIX 16 AB7 ASP H 49 THR H 59 1 11 SHEET 1 AA1 5 THR E 12 VAL E 17 0 SHEET 2 AA1 5 MET E 1 THR E 7 -1 N MET E 1 O VAL E 17 SHEET 3 AA1 5 THR E 66 LEU E 71 1 O LEU E 67 N PHE E 4 SHEET 4 AA1 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AA1 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 AA2 2 LYS F 35 VAL F 36 0 SHEET 2 AA2 2 GLN F 43 PHE F 44 -1 O PHE F 44 N LYS F 35 SHEET 1 AA3 5 THR A 12 VAL A 17 0 SHEET 2 AA3 5 MET A 1 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 AA3 5 THR A 66 LEU A 71 1 O LEU A 67 N PHE A 4 SHEET 4 AA3 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA3 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA4 2 LYS B 35 VAL B 36 0 SHEET 2 AA4 2 GLN B 43 PHE B 44 -1 O PHE B 44 N LYS B 35 SHEET 1 AA5 5 THR C 12 VAL C 17 0 SHEET 2 AA5 5 MET C 1 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA5 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA5 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA5 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA6 2 LYS D 35 VAL D 36 0 SHEET 2 AA6 2 GLN D 43 PHE D 44 -1 O PHE D 44 N LYS D 35 SHEET 1 AA7 5 THR G 12 VAL G 17 0 SHEET 2 AA7 5 MET G 1 LYS G 6 -1 N MET G 1 O VAL G 17 SHEET 3 AA7 5 THR G 66 LEU G 71 1 O LEU G 67 N PHE G 4 SHEET 4 AA7 5 GLN G 41 PHE G 45 -1 N ILE G 44 O HIS G 68 SHEET 5 AA7 5 LYS G 48 GLN G 49 -1 O LYS G 48 N PHE G 45 SHEET 1 AA8 2 LYS H 35 VAL H 36 0 SHEET 2 AA8 2 GLN H 43 PHE H 44 -1 O PHE H 44 N LYS H 35 LINK SG CYS F 37 ZN ZN F 101 1555 1555 2.31 LINK SG CYS F 40 ZN ZN F 101 1555 1555 2.32 LINK NE2 HIS F 56 ZN ZN F 101 1555 1555 2.08 LINK NE2 HIS F 60 ZN ZN F 101 1555 1555 2.06 LINK SG CYS B 37 ZN ZN B 101 1555 1555 2.31 LINK SG CYS B 40 ZN ZN B 101 1555 1555 2.32 LINK NE2 HIS B 56 ZN ZN B 101 1555 1555 2.10 LINK NE2 HIS B 60 ZN ZN B 101 1555 1555 2.07 LINK SG CYS D 37 ZN ZN D 101 1555 1555 2.32 LINK SG CYS D 40 ZN ZN D 101 1555 1555 2.30 LINK NE2 HIS D 56 ZN ZN D 101 1555 1555 2.04 LINK NE2 HIS D 60 ZN ZN D 101 1555 1555 2.05 LINK SG CYS H 37 ZN ZN H 101 1555 1555 2.31 LINK SG CYS H 40 ZN ZN H 101 1555 1555 2.26 LINK NE2 HIS H 56 ZN ZN H 101 1555 1555 2.07 LINK NE2 HIS H 60 ZN ZN H 101 1555 1555 2.05 SITE 1 AC1 4 CYS F 37 CYS F 40 HIS F 56 HIS F 60 SITE 1 AC2 5 ARG A 42 GLN A 49 ARG A 72 HOH B 218 SITE 2 AC2 5 LYS C 11 SITE 1 AC3 4 CYS B 37 CYS B 40 HIS B 56 HIS B 60 SITE 1 AC4 4 CYS D 37 CYS D 40 HIS D 56 HIS D 60 SITE 1 AC5 9 ARG C 42 GLN C 49 PHE D 61 ASP D 62 SITE 2 AC5 9 HOH D 202 ARG G 42 GLN G 49 PHE H 61 SITE 3 AC5 9 ASP H 62 SITE 1 AC6 8 GLU C 64 HOH C 106 THR G 7 LEU G 8 SITE 2 AC6 8 GLY G 10 HIS G 68 HOH G 242 VAL H 36 SITE 1 AC7 4 CYS H 37 CYS H 40 HIS H 56 HIS H 60 SITE 1 AC8 4 LEU G 73 HOH G 219 VAL H 65 HOH H 227 CRYST1 48.709 72.938 119.879 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020530 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013710 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008342 0.00000