data_5YTY # _entry.id 5YTY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YTY pdb_00005yty 10.2210/pdb5yty/pdb WWPDB D_1300005908 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YTY _pdbx_database_status.recvd_initial_deposition_date 2017-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 ? 'Wu, P.C.' 2 ? 'Kao, Y.F.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 7396 _citation.page_last 7404 _citation.title 'Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky345 _citation.pdbx_database_id_PubMed 29741655 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, P.C.' 1 ? primary 'Tzeng, S.L.' 2 ? primary 'Chang, C.K.' 3 ? primary 'Kao, Y.F.' 4 ? primary 'Waring, M.J.' 5 ? primary 'Hou, M.H.' 6 ? # _cell.entry_id 5YTY _cell.length_a 46.362 _cell.length_b 46.362 _cell.length_c 48.005 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YTY _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*CP*GP*AP*CP*GP*T)-3') ; 2122.424 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*GP*TP*CP*GP*T)-3') ; 2113.410 1 ? ? ? ? 3 polymer nat echinomycin 809.008 2 ? ? ? ? 4 non-polymer nat 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 6 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 4 ? ? ? ? 7 water nat water 18.015 65 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DA)(DC)(DG)(DT)' ACGACGT A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DT)(DC)(DG)(DT)' ACGTCGT B ? 3 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV D,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DT n 3 1 DSN n 3 2 ALA n 3 3 N2C n 3 4 MVA n 3 5 DSN n 3 6 ALA n 3 7 NCY n 3 8 MVA n # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 8 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces echinatus' _entity_src_nat.pdbx_ncbi_taxonomy_id 67293 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 unidentified ? 32644 ? 2 1 sample 1 7 unidentified ? 32644 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5YTY 5YTY ? 1 ? 1 2 PDB 5YTY 5YTY ? 2 ? 1 3 NOR 5YTY NOR01126 ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YTY A 1 ? 7 ? 5YTY 1 ? 7 ? 1 7 2 2 5YTY B 1 ? 7 ? 5YTY 1 ? 7 ? 1 7 3 3 5YTY D 1 ? 8 ? 5YTY 1 ? 8 ? 1 8 4 3 5YTY F 1 ? 8 ? 5YTY 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YTY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.73 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;20mM MES (pH 6.0), 10mM MgCl2, 2mM spermine 4HCl, 2% 2-methyl-2,4-pentanediol (MPD), 10mM MnSO4 and 10mM KBr by equilibrating against 500ul of 30% MPD reservoir solution. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-19 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL15A1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.00000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL15A1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5YTY _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.580 _reflns.number_obs 12609 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 17.4000 _reflns.B_iso_Wilson_estimate 10.94 _reflns.pdbx_redundancy 6.000 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.141 _reflns_shell.pdbx_Rsym_value 0.141 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.80 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 816 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YTY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12609 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.389 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.60 _refine.ls_d_res_high 1.58 _refine.ls_percent_reflns_obs 79.8 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.882 _refine.ls_number_reflns_R_free 1246 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.51 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 5YTZ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.207 _refine.pdbx_overall_phase_error 29.675 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 106 _refine_hist.pdbx_number_atoms_nucleic_acid 287 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 509 _refine_hist.d_res_high 1.58 _refine_hist.d_res_low 20.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 484 'X-RAY DIFFRACTION' ? f_angle_d 1.475 ? ? 687 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 28.635 ? ? 150 'X-RAY DIFFRACTION' ? f_chiral_restr 0.104 ? ? 76 'X-RAY DIFFRACTION' ? f_plane_restr 0.014 ? ? 30 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5815 1.6448 632 0.1994 40.00 0.2311 . . 81 . . . . 'X-RAY DIFFRACTION' . 1.6448 1.7197 855 0.2375 53.00 0.2216 . . 93 . . . . 'X-RAY DIFFRACTION' . 1.7197 1.8103 1082 0.2974 69.00 0.3127 . . 108 . . . . 'X-RAY DIFFRACTION' . 1.8103 1.9236 1235 0.2856 78.00 0.3488 . . 136 . . . . 'X-RAY DIFFRACTION' . 1.9236 2.0720 1438 0.2553 91.00 0.3690 . . 151 . . . . 'X-RAY DIFFRACTION' . 2.0720 2.2803 1535 0.2665 97.00 0.3258 . . 173 . . . . 'X-RAY DIFFRACTION' . 2.2803 2.6097 1534 0.2155 98.00 0.2739 . . 171 . . . . 'X-RAY DIFFRACTION' . 2.6097 3.2858 1545 0.2145 97.00 0.3178 . . 162 . . . . 'X-RAY DIFFRACTION' . 3.2858 20.6036 1507 0.1750 95.00 0.1729 . . 171 . . . . # _struct.entry_id 5YTY _struct.title 'Crystal structure of echinomycin-d(ACGACGT/ACGTCGT) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YTY _struct_keywords.text 'DNA intercalator, Echinomycin-DNA complex, Watson-Crick, heptamer duplex, ANTIBIOTIC-DNA complex' _struct_keywords.pdbx_keywords ANTIBIOTIC/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? M N N 7 ? N N N 7 ? O N N 7 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C N2C 3 SG ? ? ? 1_555 C NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 2.899 ? ? disulf2 disulf ? ? D N2C 3 SG ? ? ? 1_555 D NCY 7 SG ? ? F N2C 3 F NCY 7 1_555 ? ? ? ? ? ? ? 2.906 ? ? covale1 covale both ? C DSN 1 C ? ? ? 1_555 C ALA 2 N ? ? D DSN 1 D ALA 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale one ? C DSN 1 OG ? ? ? 1_555 C MVA 8 C ? ? D DSN 1 D MVA 8 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale3 covale both ? C DSN 1 N ? ? ? 1_555 H QUI . C ? ? D DSN 1 D QUI 101 1_555 ? ? ? ? ? ? ? 1.356 ? ? covale4 covale both ? C ALA 2 C ? ? ? 1_555 C N2C 3 N ? ? D ALA 2 D N2C 3 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale5 covale both ? C N2C 3 C ? ? ? 1_555 C MVA 4 N ? ? D N2C 3 D MVA 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? C N2C 3 CB ? ? ? 1_555 C NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 1.829 ? ? covale7 covale one ? C MVA 4 C ? ? ? 1_555 C DSN 5 OG ? ? D MVA 4 D DSN 5 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale8 covale both ? C DSN 5 C ? ? ? 1_555 C ALA 6 N ? ? D DSN 5 D ALA 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale9 covale both ? C DSN 5 N ? ? ? 1_555 I QUI . C ? ? D DSN 5 D QUI 102 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale10 covale both ? C ALA 6 C ? ? ? 1_555 C NCY 7 N ? ? D ALA 6 D NCY 7 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale11 covale both ? C NCY 7 C ? ? ? 1_555 C MVA 8 N ? ? D NCY 7 D MVA 8 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? D DSN 1 C ? ? ? 1_555 D ALA 2 N ? ? F DSN 1 F ALA 2 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale13 covale one ? D DSN 1 OG ? ? ? 1_555 D MVA 8 C ? ? F DSN 1 F MVA 8 1_555 ? ? ? ? ? ? ? 1.371 ? ? covale14 covale both ? D DSN 1 N ? ? ? 1_555 J QUI . C ? ? F DSN 1 F QUI 101 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale15 covale both ? D ALA 2 C ? ? ? 1_555 D N2C 3 N ? ? F ALA 2 F N2C 3 1_555 ? ? ? ? ? ? ? 1.366 ? ? covale16 covale both ? D N2C 3 C ? ? ? 1_555 D MVA 4 N ? ? F N2C 3 F MVA 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale17 covale both ? D N2C 3 CB ? ? ? 1_555 D NCY 7 SG ? ? F N2C 3 F NCY 7 1_555 ? ? ? ? ? ? ? 1.859 ? ? covale18 covale one ? D MVA 4 C ? ? ? 1_555 D DSN 5 OG ? ? F MVA 4 F DSN 5 1_555 ? ? ? ? ? ? ? 1.374 ? ? covale19 covale both ? D DSN 5 C ? ? ? 1_555 D ALA 6 N ? ? F DSN 5 F ALA 6 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale20 covale both ? D DSN 5 N ? ? ? 1_555 K QUI . C ? ? F DSN 5 F QUI 102 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale21 covale both ? D ALA 6 C ? ? ? 1_555 D NCY 7 N ? ? F ALA 6 F NCY 7 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale22 covale both ? D NCY 7 C ? ? ? 1_555 D MVA 8 N ? ? F NCY 7 F MVA 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 F MN . MN ? ? A DG 3 B MN 101 6_555 ? ? ? ? ? ? ? 2.163 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 L HOH . O ? ? A MG 101 A HOH 209 1_555 ? ? ? ? ? ? ? 2.762 ? ? metalc3 metalc ? ? L HOH . O ? ? ? 6_555 F MN . MN ? ? A HOH 212 B MN 101 1_555 ? ? ? ? ? ? ? 2.109 ? ? metalc4 metalc ? ? L HOH . O ? ? ? 6_555 F MN . MN ? ? A HOH 217 B MN 101 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc5 metalc ? ? L HOH . O ? ? ? 6_555 F MN . MN ? ? A HOH 219 B MN 101 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc6 metalc ? ? B DG 3 N7 ? ? ? 1_555 F MN . MN ? ? B DG 3 B MN 101 1_555 ? ? ? ? ? ? ? 2.200 ? ? metalc7 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? B MN 101 B HOH 211 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc8 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc9 metalc ? ? G MG . MG ? ? ? 1_555 M HOH . O ? ? B MG 102 B HOH 215 1_555 ? ? ? ? ? ? ? 2.748 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 4 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 4 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 101 ? 2 'binding site for residue MG A 101' AC2 Software B MN 101 ? 6 'binding site for residue MN B 101' AC3 Software B MG 102 ? 3 'binding site for residue MG B 102' AC4 Software D QUI 101 ? 8 'binding site for residue QUI D 101' AC5 Software D QUI 102 ? 8 'binding site for residue QUI D 102' AC6 Software D N2C 3 ? 6 'binding site for residues N2C D 3 and NCY D 7' AC7 Software D N2C 3 ? 11 'binding site for residues N2C D 3 and MVA D 4' AC8 Software D NCY 7 ? 8 'binding site for residues NCY D 7 and MVA D 8' AC9 Software F DSN 1 ? 11 'binding site for Di-peptide DSN F 1 and MVA F 8' AD1 Software F DSN 1 ? 8 'binding site for Di-peptide DSN F 1 and ALA F 2' AD2 Software F ALA 2 ? 8 'binding site for Di-peptide ALA F 2 and N2C F 3' AD3 Software F N2C 3 ? 6 'binding site for residues N2C F 3 and NCY F 7' AD4 Software F N2C 3 ? 7 'binding site for residues N2C F 3 and MVA F 4' AD5 Software F MVA 4 ? 7 'binding site for Di-peptide MVA F 4 and DSN F 5' AD6 Software F DSN 5 ? 8 'binding site for Di-peptide DSN F 5 and ALA F 6' AD7 Software F ALA 6 ? 8 'binding site for Di-peptide ALA F 6 and NCY F 7' AD8 Software F NCY 7 ? 10 'binding site for residues NCY F 7 and MVA F 8' AD9 Software F QUI 101 ? 8 'binding site for Di-peptide QUI F 101 and DSN F 1' AE1 Software F QUI 102 ? 8 'binding site for Di-peptide QUI F 102 and DSN F 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 6 ? DG A 6 . ? 1_555 ? 2 AC1 2 HOH L . ? HOH A 209 . ? 1_555 ? 3 AC2 6 DG A 3 ? DG A 3 . ? 6_555 ? 4 AC2 6 HOH L . ? HOH A 212 . ? 6_555 ? 5 AC2 6 HOH L . ? HOH A 217 . ? 6_555 ? 6 AC2 6 HOH L . ? HOH A 219 . ? 6_555 ? 7 AC2 6 DG B 3 ? DG B 3 . ? 1_555 ? 8 AC2 6 HOH M . ? HOH B 211 . ? 1_555 ? 9 AC3 3 DG B 6 ? DG B 6 . ? 1_555 ? 10 AC3 3 HOH M . ? HOH B 207 . ? 1_555 ? 11 AC3 3 HOH M . ? HOH B 215 . ? 1_555 ? 12 AC4 8 DA A 1 ? DA A 1 . ? 1_555 ? 13 AC4 8 DC A 2 ? DC A 2 . ? 1_555 ? 14 AC4 8 DG B 6 ? DG B 6 . ? 1_555 ? 15 AC4 8 DT B 7 ? DT B 7 . ? 1_555 ? 16 AC4 8 DSN C 1 ? DSN D 1 . ? 1_555 ? 17 AC4 8 ALA C 2 ? ALA D 2 . ? 1_555 ? 18 AC4 8 MVA C 8 ? MVA D 8 . ? 1_555 ? 19 AC4 8 HOH N . ? HOH D 203 . ? 1_555 ? 20 AC5 8 DG A 3 ? DG A 3 . ? 1_555 ? 21 AC5 8 DA A 4 ? DA A 4 . ? 1_555 ? 22 AC5 8 DT B 4 ? DT B 4 . ? 1_555 ? 23 AC5 8 DC B 5 ? DC B 5 . ? 1_555 ? 24 AC5 8 MVA C 4 ? MVA D 4 . ? 1_555 ? 25 AC5 8 DSN C 5 ? DSN D 5 . ? 1_555 ? 26 AC5 8 ALA C 6 ? ALA D 6 . ? 1_555 ? 27 AC5 8 HOH N . ? HOH D 202 . ? 1_555 ? 28 AC6 6 DSN C 1 ? DSN D 1 . ? 1_555 ? 29 AC6 6 ALA C 2 ? ALA D 2 . ? 1_555 ? 30 AC6 6 MVA C 4 ? MVA D 4 . ? 1_555 ? 31 AC6 6 DSN C 5 ? DSN D 5 . ? 1_555 ? 32 AC6 6 ALA C 6 ? ALA D 6 . ? 1_555 ? 33 AC6 6 MVA C 8 ? MVA D 8 . ? 1_555 ? 34 AC7 11 DG A 3 ? DG A 3 . ? 1_555 ? 35 AC7 11 DT B 4 ? DT B 4 . ? 1_555 ? 36 AC7 11 DC B 5 ? DC B 5 . ? 1_555 ? 37 AC7 11 DSN C 1 ? DSN D 1 . ? 1_555 ? 38 AC7 11 ALA C 2 ? ALA D 2 . ? 1_555 ? 39 AC7 11 DSN C 5 ? DSN D 5 . ? 1_555 ? 40 AC7 11 ALA C 6 ? ALA D 6 . ? 1_555 ? 41 AC7 11 NCY C 7 ? NCY D 7 . ? 1_555 ? 42 AC7 11 QUI I . ? QUI D 102 . ? 1_555 ? 43 AC7 11 MVA D 8 ? MVA F 8 . ? 1_555 ? 44 AC7 11 HOH O . ? HOH F 203 . ? 1_555 ? 45 AC8 8 DA A 1 ? DA A 1 . ? 1_555 ? 46 AC8 8 DC A 2 ? DC A 2 . ? 1_555 ? 47 AC8 8 DG B 6 ? DG B 6 . ? 1_555 ? 48 AC8 8 DSN C 1 ? DSN D 1 . ? 1_555 ? 49 AC8 8 ALA C 2 ? ALA D 2 . ? 1_555 ? 50 AC8 8 N2C C 3 ? N2C D 3 . ? 1_555 ? 51 AC8 8 ALA C 6 ? ALA D 6 . ? 1_555 ? 52 AC8 8 QUI H . ? QUI D 101 . ? 1_555 ? 53 AC9 11 DA A 4 ? DA A 4 . ? 1_555 ? 54 AC9 11 DC A 5 ? DC A 5 . ? 1_555 ? 55 AC9 11 DG B 3 ? DG B 3 . ? 1_555 ? 56 AC9 11 DT B 4 ? DT B 4 . ? 1_555 ? 57 AC9 11 MVA C 4 ? MVA D 4 . ? 1_555 ? 58 AC9 11 ALA D 2 ? ALA F 2 . ? 1_555 ? 59 AC9 11 ALA D 6 ? ALA F 6 . ? 1_555 ? 60 AC9 11 NCY D 7 ? NCY F 7 . ? 1_555 ? 61 AC9 11 QUI J . ? QUI F 101 . ? 1_555 ? 62 AC9 11 HOH O . ? HOH F 201 . ? 1_555 ? 63 AC9 11 HOH O . ? HOH F 203 . ? 1_555 ? 64 AD1 8 DG B 3 ? DG B 3 . ? 1_555 ? 65 AD1 8 DT B 4 ? DT B 4 . ? 1_555 ? 66 AD1 8 N2C D 3 ? N2C F 3 . ? 1_555 ? 67 AD1 8 MVA D 4 ? MVA F 4 . ? 1_555 ? 68 AD1 8 ALA D 6 ? ALA F 6 . ? 1_555 ? 69 AD1 8 NCY D 7 ? NCY F 7 . ? 1_555 ? 70 AD1 8 MVA D 8 ? MVA F 8 . ? 1_555 ? 71 AD1 8 QUI J . ? QUI F 101 . ? 1_555 ? 72 AD2 8 DG B 3 ? DG B 3 . ? 1_555 ? 73 AD2 8 DSN D 1 ? DSN F 1 . ? 1_555 ? 74 AD2 8 MVA D 4 ? MVA F 4 . ? 1_555 ? 75 AD2 8 DSN D 5 ? DSN F 5 . ? 1_555 ? 76 AD2 8 ALA D 6 ? ALA F 6 . ? 1_555 ? 77 AD2 8 NCY D 7 ? NCY F 7 . ? 1_555 ? 78 AD2 8 MVA D 8 ? MVA F 8 . ? 1_555 ? 79 AD2 8 QUI J . ? QUI F 101 . ? 1_555 ? 80 AD3 6 DSN D 1 ? DSN F 1 . ? 1_555 ? 81 AD3 6 ALA D 2 ? ALA F 2 . ? 1_555 ? 82 AD3 6 MVA D 4 ? MVA F 4 . ? 1_555 ? 83 AD3 6 DSN D 5 ? DSN F 5 . ? 1_555 ? 84 AD3 6 ALA D 6 ? ALA F 6 . ? 1_555 ? 85 AD3 6 MVA D 8 ? MVA F 8 . ? 1_555 ? 86 AD4 7 DG A 6 ? DG A 6 . ? 1_555 ? 87 AD4 7 DC B 2 ? DC B 2 . ? 1_555 ? 88 AD4 7 ALA D 2 ? ALA F 2 . ? 1_555 ? 89 AD4 7 DSN D 5 ? DSN F 5 . ? 1_555 ? 90 AD4 7 ALA D 6 ? ALA F 6 . ? 1_555 ? 91 AD4 7 NCY D 7 ? NCY F 7 . ? 1_555 ? 92 AD4 7 QUI K . ? QUI F 102 . ? 1_555 ? 93 AD5 7 DG A 6 ? DG A 6 . ? 1_555 ? 94 AD5 7 DT A 7 ? DT A 7 . ? 1_555 ? 95 AD5 7 DC B 2 ? DC B 2 . ? 1_555 ? 96 AD5 7 ALA D 2 ? ALA F 2 . ? 1_555 ? 97 AD5 7 N2C D 3 ? N2C F 3 . ? 1_555 ? 98 AD5 7 ALA D 6 ? ALA F 6 . ? 1_555 ? 99 AD5 7 QUI K . ? QUI F 102 . ? 1_555 ? 100 AD6 8 DG A 6 ? DG A 6 . ? 1_555 ? 101 AD6 8 DT A 7 ? DT A 7 . ? 1_555 ? 102 AD6 8 ALA D 2 ? ALA F 2 . ? 1_555 ? 103 AD6 8 N2C D 3 ? N2C F 3 . ? 1_555 ? 104 AD6 8 MVA D 4 ? MVA F 4 . ? 1_555 ? 105 AD6 8 NCY D 7 ? NCY F 7 . ? 1_555 ? 106 AD6 8 MVA D 8 ? MVA F 8 . ? 1_555 ? 107 AD6 8 QUI K . ? QUI F 102 . ? 1_555 ? 108 AD7 8 DG A 6 ? DG A 6 . ? 1_555 ? 109 AD7 8 DSN D 1 ? DSN F 1 . ? 1_555 ? 110 AD7 8 ALA D 2 ? ALA F 2 . ? 1_555 ? 111 AD7 8 N2C D 3 ? N2C F 3 . ? 1_555 ? 112 AD7 8 MVA D 4 ? MVA F 4 . ? 1_555 ? 113 AD7 8 DSN D 5 ? DSN F 5 . ? 1_555 ? 114 AD7 8 MVA D 8 ? MVA F 8 . ? 1_555 ? 115 AD7 8 QUI K . ? QUI F 102 . ? 1_555 ? 116 AD8 10 DA A 4 ? DA A 4 . ? 1_555 ? 117 AD8 10 DC A 5 ? DC A 5 . ? 1_555 ? 118 AD8 10 DG B 3 ? DG B 3 . ? 1_555 ? 119 AD8 10 MVA C 4 ? MVA D 4 . ? 1_555 ? 120 AD8 10 DSN D 1 ? DSN F 1 . ? 1_555 ? 121 AD8 10 ALA D 2 ? ALA F 2 . ? 1_555 ? 122 AD8 10 N2C D 3 ? N2C F 3 . ? 1_555 ? 123 AD8 10 ALA D 6 ? ALA F 6 . ? 1_555 ? 124 AD8 10 HOH O . ? HOH F 201 . ? 1_555 ? 125 AD8 10 HOH O . ? HOH F 203 . ? 1_555 ? 126 AD9 8 DA A 4 ? DA A 4 . ? 1_555 ? 127 AD9 8 DC A 5 ? DC A 5 . ? 1_555 ? 128 AD9 8 DG B 3 ? DG B 3 . ? 1_555 ? 129 AD9 8 DT B 4 ? DT B 4 . ? 1_555 ? 130 AD9 8 ALA D 2 ? ALA F 2 . ? 1_555 ? 131 AD9 8 NCY D 7 ? NCY F 7 . ? 1_555 ? 132 AD9 8 MVA D 8 ? MVA F 8 . ? 1_555 ? 133 AD9 8 HOH O . ? HOH F 202 . ? 1_555 ? 134 AE1 8 DG A 6 ? DG A 6 . ? 1_555 ? 135 AE1 8 DT A 7 ? DT A 7 . ? 1_555 ? 136 AE1 8 DA B 1 ? DA B 1 . ? 1_555 ? 137 AE1 8 DC B 2 ? DC B 2 . ? 1_555 ? 138 AE1 8 N2C D 3 ? N2C F 3 . ? 1_555 ? 139 AE1 8 MVA D 4 ? MVA F 4 . ? 1_555 ? 140 AE1 8 ALA D 6 ? ALA F 6 . ? 1_555 ? 141 AE1 8 HOH O . ? HOH F 204 . ? 1_555 ? # _atom_sites.entry_id 5YTY _atom_sites.fract_transf_matrix[1][1] 0.021569 _atom_sites.fract_transf_matrix[1][2] 0.012453 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024906 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020831 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DT 7 7 7 DT DT B . n C 3 1 DSN 1 1 1 DSN DSN D . n C 3 2 ALA 2 2 2 ALA ALA D . n C 3 3 N2C 3 3 3 N2C N2C D . n C 3 4 MVA 4 4 4 MVA MVA D . n C 3 5 DSN 5 5 5 DSN DSN D . n C 3 6 ALA 6 6 6 ALA ALA D . n C 3 7 NCY 7 7 7 NCY NCY D . n C 3 8 MVA 8 8 8 MVA MVA D . n D 3 1 DSN 1 1 1 DSN DSN F . n D 3 2 ALA 2 2 2 ALA ALA F . n D 3 3 N2C 3 3 3 N2C N2C F . n D 3 4 MVA 4 4 4 MVA MVA F . n D 3 5 DSN 5 5 5 DSN DSN F . n D 3 6 ALA 6 6 6 ALA ALA F . n D 3 7 NCY 7 7 7 NCY NCY F . n D 3 8 MVA 8 8 8 MVA MVA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 MG 1 101 12 MG MG A . F 5 MN 1 101 12 MN MN B . G 4 MG 1 102 11 MG MG B . H 6 QUI 1 101 10 QUI QUI D . I 6 QUI 1 102 11 QUI QUI D . J 6 QUI 1 101 10 QUI QUI F . K 6 QUI 1 102 11 QUI QUI F . L 7 HOH 1 201 62 HOH HOH A . L 7 HOH 2 202 21 HOH HOH A . L 7 HOH 3 203 50 HOH HOH A . L 7 HOH 4 204 55 HOH HOH A . L 7 HOH 5 205 38 HOH HOH A . L 7 HOH 6 206 6 HOH HOH A . L 7 HOH 7 207 7 HOH HOH A . L 7 HOH 8 208 16 HOH HOH A . L 7 HOH 9 209 49 HOH HOH A . L 7 HOH 10 210 1 HOH HOH A . L 7 HOH 11 211 22 HOH HOH A . L 7 HOH 12 212 15 HOH HOH A . L 7 HOH 13 213 2 HOH HOH A . L 7 HOH 14 214 20 HOH HOH A . L 7 HOH 15 215 53 HOH HOH A . L 7 HOH 16 216 43 HOH HOH A . L 7 HOH 17 217 19 HOH HOH A . L 7 HOH 18 218 24 HOH HOH A . L 7 HOH 19 219 17 HOH HOH A . L 7 HOH 20 220 39 HOH HOH A . L 7 HOH 21 221 57 HOH HOH A . L 7 HOH 22 222 61 HOH HOH A . L 7 HOH 23 223 65 HOH HOH A . L 7 HOH 24 224 12 HOH HOH A . L 7 HOH 25 225 36 HOH HOH A . L 7 HOH 26 226 51 HOH HOH A . M 7 HOH 1 201 34 HOH HOH B . M 7 HOH 2 202 52 HOH HOH B . M 7 HOH 3 203 64 HOH HOH B . M 7 HOH 4 204 4 HOH HOH B . M 7 HOH 5 205 8 HOH HOH B . M 7 HOH 6 206 13 HOH HOH B . M 7 HOH 7 207 28 HOH HOH B . M 7 HOH 8 208 27 HOH HOH B . M 7 HOH 9 209 14 HOH HOH B . M 7 HOH 10 210 42 HOH HOH B . M 7 HOH 11 211 18 HOH HOH B . M 7 HOH 12 212 9 HOH HOH B . M 7 HOH 13 213 26 HOH HOH B . M 7 HOH 14 214 41 HOH HOH B . M 7 HOH 15 215 32 HOH HOH B . M 7 HOH 16 216 46 HOH HOH B . M 7 HOH 17 217 33 HOH HOH B . M 7 HOH 18 218 54 HOH HOH B . M 7 HOH 19 219 40 HOH HOH B . M 7 HOH 20 220 58 HOH HOH B . M 7 HOH 21 221 44 HOH HOH B . M 7 HOH 22 222 63 HOH HOH B . M 7 HOH 23 223 5 HOH HOH B . M 7 HOH 24 224 56 HOH HOH B . M 7 HOH 25 225 37 HOH HOH B . M 7 HOH 26 226 60 HOH HOH B . M 7 HOH 27 227 35 HOH HOH B . N 7 HOH 1 201 10 HOH HOH D . N 7 HOH 2 202 11 HOH HOH D . N 7 HOH 3 203 31 HOH HOH D . N 7 HOH 4 204 48 HOH HOH D . N 7 HOH 5 205 47 HOH HOH D . N 7 HOH 6 206 59 HOH HOH D . O 7 HOH 1 201 30 HOH HOH F . O 7 HOH 2 202 3 HOH HOH F . O 7 HOH 3 203 29 HOH HOH F . O 7 HOH 4 204 23 HOH HOH F . O 7 HOH 5 205 25 HOH HOH F . O 7 HOH 6 206 45 HOH HOH F . # _pdbx_molecule_features.prd_id PRD_000491 _pdbx_molecule_features.name Echinomycin _pdbx_molecule_features.type 'Cyclic depsipeptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 C 1 PRD_000491 H 1 PRD_000491 I 2 PRD_000491 D 2 PRD_000491 J 2 PRD_000491 K # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5050 ? 1 MORE 2 ? 1 'SSA (A^2)' 2470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 226 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id L _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 212 ? 6_555 95.1 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 217 ? 6_555 91.6 ? 3 O ? L HOH . ? A HOH 212 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 217 ? 6_555 14.7 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 219 ? 6_555 95.4 ? 5 O ? L HOH . ? A HOH 212 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 219 ? 6_555 0.6 ? 6 O ? L HOH . ? A HOH 217 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? L HOH . ? A HOH 219 ? 6_555 15.3 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 N7 ? B DG 3 ? B DG 3 ? 1_555 83.8 ? 8 O ? L HOH . ? A HOH 212 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 N7 ? B DG 3 ? B DG 3 ? 1_555 11.8 ? 9 O ? L HOH . ? A HOH 217 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 N7 ? B DG 3 ? B DG 3 ? 1_555 13.3 ? 10 O ? L HOH . ? A HOH 219 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 N7 ? B DG 3 ? B DG 3 ? 1_555 12.3 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 O ? M HOH . ? B HOH 211 ? 1_555 90.9 ? 12 O ? L HOH . ? A HOH 212 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? M HOH . ? B HOH 211 ? 1_555 13.2 ? 13 O ? L HOH . ? A HOH 217 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? M HOH . ? B HOH 211 ? 1_555 1.8 ? 14 O ? L HOH . ? A HOH 219 ? 6_555 MN ? F MN . ? B MN 101 ? 6_555 O ? M HOH . ? B HOH 211 ? 1_555 13.8 ? 15 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 6_555 O ? M HOH . ? B HOH 211 ? 1_555 11.5 ? 16 O ? M HOH . ? B HOH 207 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O ? M HOH . ? B HOH 215 ? 1_555 118.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-05-30 3 'Structure model' 1 2 2018-09-05 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entry_details 2 2 'Structure model' pdbx_molecule_features 3 2 'Structure model' struct_ref 4 3 'Structure model' citation 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' pdbx_struct_conn_angle 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct_ref.db_name' 2 2 'Structure model' '_struct_ref.pdbx_db_accession' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.conn_type_id' 27 4 'Structure model' '_struct_conn.id' 28 4 'Structure model' '_struct_conn.pdbx_dist_value' 29 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr1_symmetry' 38 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 4 'Structure model' '_struct_conn.ptnr2_symmetry' 46 4 'Structure model' '_struct_conn_type.id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 7.0.005 6 # _pdbx_entry_details.entry_id 5YTY _pdbx_entry_details.compound_details ;THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A DC 2 ? ? O A HOH 201 ? ? 2.05 2 1 N D DSN 5 ? ? O1 D QUI 102 ? ? 2.08 3 1 N F DSN 1 ? ? O1 F QUI 101 ? ? 2.17 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DA OP3 O N N 14 DA P P N N 15 DA OP1 O N N 16 DA OP2 O N N 17 DA "O5'" O N N 18 DA "C5'" C N N 19 DA "C4'" C N R 20 DA "O4'" O N N 21 DA "C3'" C N S 22 DA "O3'" O N N 23 DA "C2'" C N N 24 DA "C1'" C N R 25 DA N9 N Y N 26 DA C8 C Y N 27 DA N7 N Y N 28 DA C5 C Y N 29 DA C6 C Y N 30 DA N6 N N N 31 DA N1 N Y N 32 DA C2 C Y N 33 DA N3 N Y N 34 DA C4 C Y N 35 DA HOP3 H N N 36 DA HOP2 H N N 37 DA "H5'" H N N 38 DA "H5''" H N N 39 DA "H4'" H N N 40 DA "H3'" H N N 41 DA "HO3'" H N N 42 DA "H2'" H N N 43 DA "H2''" H N N 44 DA "H1'" H N N 45 DA H8 H N N 46 DA H61 H N N 47 DA H62 H N N 48 DA H2 H N N 49 DC OP3 O N N 50 DC P P N N 51 DC OP1 O N N 52 DC OP2 O N N 53 DC "O5'" O N N 54 DC "C5'" C N N 55 DC "C4'" C N R 56 DC "O4'" O N N 57 DC "C3'" C N S 58 DC "O3'" O N N 59 DC "C2'" C N N 60 DC "C1'" C N R 61 DC N1 N N N 62 DC C2 C N N 63 DC O2 O N N 64 DC N3 N N N 65 DC C4 C N N 66 DC N4 N N N 67 DC C5 C N N 68 DC C6 C N N 69 DC HOP3 H N N 70 DC HOP2 H N N 71 DC "H5'" H N N 72 DC "H5''" H N N 73 DC "H4'" H N N 74 DC "H3'" H N N 75 DC "HO3'" H N N 76 DC "H2'" H N N 77 DC "H2''" H N N 78 DC "H1'" H N N 79 DC H41 H N N 80 DC H42 H N N 81 DC H5 H N N 82 DC H6 H N N 83 DG OP3 O N N 84 DG P P N N 85 DG OP1 O N N 86 DG OP2 O N N 87 DG "O5'" O N N 88 DG "C5'" C N N 89 DG "C4'" C N R 90 DG "O4'" O N N 91 DG "C3'" C N S 92 DG "O3'" O N N 93 DG "C2'" C N N 94 DG "C1'" C N R 95 DG N9 N Y N 96 DG C8 C Y N 97 DG N7 N Y N 98 DG C5 C Y N 99 DG C6 C N N 100 DG O6 O N N 101 DG N1 N N N 102 DG C2 C N N 103 DG N2 N N N 104 DG N3 N N N 105 DG C4 C Y N 106 DG HOP3 H N N 107 DG HOP2 H N N 108 DG "H5'" H N N 109 DG "H5''" H N N 110 DG "H4'" H N N 111 DG "H3'" H N N 112 DG "HO3'" H N N 113 DG "H2'" H N N 114 DG "H2''" H N N 115 DG "H1'" H N N 116 DG H8 H N N 117 DG H1 H N N 118 DG H21 H N N 119 DG H22 H N N 120 DSN N N N N 121 DSN CA C N R 122 DSN C C N N 123 DSN O O N N 124 DSN OXT O N N 125 DSN CB C N N 126 DSN OG O N N 127 DSN H H N N 128 DSN H2 H N N 129 DSN HA H N N 130 DSN HXT H N N 131 DSN HB2 H N N 132 DSN HB3 H N N 133 DSN HG H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 HOH O O N N 171 HOH H1 H N N 172 HOH H2 H N N 173 MG MG MG N N 174 MN MN MN N N 175 MVA N N N N 176 MVA CN C N N 177 MVA CA C N S 178 MVA CB C N N 179 MVA CG1 C N N 180 MVA CG2 C N N 181 MVA C C N N 182 MVA O O N N 183 MVA OXT O N N 184 MVA H H N N 185 MVA HN1 H N N 186 MVA HN2 H N N 187 MVA HN3 H N N 188 MVA HA H N N 189 MVA HB H N N 190 MVA HG11 H N N 191 MVA HG12 H N N 192 MVA HG13 H N N 193 MVA HG21 H N N 194 MVA HG22 H N N 195 MVA HG23 H N N 196 MVA HXT H N N 197 N2C N N N N 198 N2C CA C N R 199 N2C CB C N N 200 N2C SG S N N 201 N2C CD C N N 202 N2C CN C N N 203 N2C C C N N 204 N2C O O N N 205 N2C OXT O N N 206 N2C H H N N 207 N2C HA H N N 208 N2C HB2 H N N 209 N2C HB3 H N N 210 N2C HD1 H N N 211 N2C HD2 H N N 212 N2C HD3 H N N 213 N2C HN1 H N N 214 N2C HN2 H N N 215 N2C HN3 H N N 216 N2C HXT H N N 217 NCY N N N N 218 NCY CA C N R 219 NCY CB C N N 220 NCY SG S N N 221 NCY CN C N N 222 NCY C C N N 223 NCY O O N N 224 NCY OXT O N N 225 NCY H H N N 226 NCY HA H N N 227 NCY HB2 H N N 228 NCY HB3 H N N 229 NCY HG H N N 230 NCY HCN1 H N N 231 NCY HCN2 H N N 232 NCY HCN3 H N N 233 NCY HXT H N N 234 QUI N1 N Y N 235 QUI C2 C Y N 236 QUI C3 C Y N 237 QUI N4 N Y N 238 QUI C5 C Y N 239 QUI C6 C Y N 240 QUI C7 C Y N 241 QUI C8 C Y N 242 QUI C9 C Y N 243 QUI C10 C Y N 244 QUI C C N N 245 QUI O1 O N N 246 QUI O2 O N N 247 QUI H3 H N N 248 QUI H5 H N N 249 QUI H6 H N N 250 QUI H7 H N N 251 QUI H8 H N N 252 QUI HO2 H N N 253 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DA OP3 P sing N N 13 DA OP3 HOP3 sing N N 14 DA P OP1 doub N N 15 DA P OP2 sing N N 16 DA P "O5'" sing N N 17 DA OP2 HOP2 sing N N 18 DA "O5'" "C5'" sing N N 19 DA "C5'" "C4'" sing N N 20 DA "C5'" "H5'" sing N N 21 DA "C5'" "H5''" sing N N 22 DA "C4'" "O4'" sing N N 23 DA "C4'" "C3'" sing N N 24 DA "C4'" "H4'" sing N N 25 DA "O4'" "C1'" sing N N 26 DA "C3'" "O3'" sing N N 27 DA "C3'" "C2'" sing N N 28 DA "C3'" "H3'" sing N N 29 DA "O3'" "HO3'" sing N N 30 DA "C2'" "C1'" sing N N 31 DA "C2'" "H2'" sing N N 32 DA "C2'" "H2''" sing N N 33 DA "C1'" N9 sing N N 34 DA "C1'" "H1'" sing N N 35 DA N9 C8 sing Y N 36 DA N9 C4 sing Y N 37 DA C8 N7 doub Y N 38 DA C8 H8 sing N N 39 DA N7 C5 sing Y N 40 DA C5 C6 sing Y N 41 DA C5 C4 doub Y N 42 DA C6 N6 sing N N 43 DA C6 N1 doub Y N 44 DA N6 H61 sing N N 45 DA N6 H62 sing N N 46 DA N1 C2 sing Y N 47 DA C2 N3 doub Y N 48 DA C2 H2 sing N N 49 DA N3 C4 sing Y N 50 DC OP3 P sing N N 51 DC OP3 HOP3 sing N N 52 DC P OP1 doub N N 53 DC P OP2 sing N N 54 DC P "O5'" sing N N 55 DC OP2 HOP2 sing N N 56 DC "O5'" "C5'" sing N N 57 DC "C5'" "C4'" sing N N 58 DC "C5'" "H5'" sing N N 59 DC "C5'" "H5''" sing N N 60 DC "C4'" "O4'" sing N N 61 DC "C4'" "C3'" sing N N 62 DC "C4'" "H4'" sing N N 63 DC "O4'" "C1'" sing N N 64 DC "C3'" "O3'" sing N N 65 DC "C3'" "C2'" sing N N 66 DC "C3'" "H3'" sing N N 67 DC "O3'" "HO3'" sing N N 68 DC "C2'" "C1'" sing N N 69 DC "C2'" "H2'" sing N N 70 DC "C2'" "H2''" sing N N 71 DC "C1'" N1 sing N N 72 DC "C1'" "H1'" sing N N 73 DC N1 C2 sing N N 74 DC N1 C6 sing N N 75 DC C2 O2 doub N N 76 DC C2 N3 sing N N 77 DC N3 C4 doub N N 78 DC C4 N4 sing N N 79 DC C4 C5 sing N N 80 DC N4 H41 sing N N 81 DC N4 H42 sing N N 82 DC C5 C6 doub N N 83 DC C5 H5 sing N N 84 DC C6 H6 sing N N 85 DG OP3 P sing N N 86 DG OP3 HOP3 sing N N 87 DG P OP1 doub N N 88 DG P OP2 sing N N 89 DG P "O5'" sing N N 90 DG OP2 HOP2 sing N N 91 DG "O5'" "C5'" sing N N 92 DG "C5'" "C4'" sing N N 93 DG "C5'" "H5'" sing N N 94 DG "C5'" "H5''" sing N N 95 DG "C4'" "O4'" sing N N 96 DG "C4'" "C3'" sing N N 97 DG "C4'" "H4'" sing N N 98 DG "O4'" "C1'" sing N N 99 DG "C3'" "O3'" sing N N 100 DG "C3'" "C2'" sing N N 101 DG "C3'" "H3'" sing N N 102 DG "O3'" "HO3'" sing N N 103 DG "C2'" "C1'" sing N N 104 DG "C2'" "H2'" sing N N 105 DG "C2'" "H2''" sing N N 106 DG "C1'" N9 sing N N 107 DG "C1'" "H1'" sing N N 108 DG N9 C8 sing Y N 109 DG N9 C4 sing Y N 110 DG C8 N7 doub Y N 111 DG C8 H8 sing N N 112 DG N7 C5 sing Y N 113 DG C5 C6 sing N N 114 DG C5 C4 doub Y N 115 DG C6 O6 doub N N 116 DG C6 N1 sing N N 117 DG N1 C2 sing N N 118 DG N1 H1 sing N N 119 DG C2 N2 sing N N 120 DG C2 N3 doub N N 121 DG N2 H21 sing N N 122 DG N2 H22 sing N N 123 DG N3 C4 sing N N 124 DSN N CA sing N N 125 DSN N H sing N N 126 DSN N H2 sing N N 127 DSN CA C sing N N 128 DSN CA CB sing N N 129 DSN CA HA sing N N 130 DSN C O doub N N 131 DSN C OXT sing N N 132 DSN OXT HXT sing N N 133 DSN CB OG sing N N 134 DSN CB HB2 sing N N 135 DSN CB HB3 sing N N 136 DSN OG HG sing N N 137 DT OP3 P sing N N 138 DT OP3 HOP3 sing N N 139 DT P OP1 doub N N 140 DT P OP2 sing N N 141 DT P "O5'" sing N N 142 DT OP2 HOP2 sing N N 143 DT "O5'" "C5'" sing N N 144 DT "C5'" "C4'" sing N N 145 DT "C5'" "H5'" sing N N 146 DT "C5'" "H5''" sing N N 147 DT "C4'" "O4'" sing N N 148 DT "C4'" "C3'" sing N N 149 DT "C4'" "H4'" sing N N 150 DT "O4'" "C1'" sing N N 151 DT "C3'" "O3'" sing N N 152 DT "C3'" "C2'" sing N N 153 DT "C3'" "H3'" sing N N 154 DT "O3'" "HO3'" sing N N 155 DT "C2'" "C1'" sing N N 156 DT "C2'" "H2'" sing N N 157 DT "C2'" "H2''" sing N N 158 DT "C1'" N1 sing N N 159 DT "C1'" "H1'" sing N N 160 DT N1 C2 sing N N 161 DT N1 C6 sing N N 162 DT C2 O2 doub N N 163 DT C2 N3 sing N N 164 DT N3 C4 sing N N 165 DT N3 H3 sing N N 166 DT C4 O4 doub N N 167 DT C4 C5 sing N N 168 DT C5 C7 sing N N 169 DT C5 C6 doub N N 170 DT C7 H71 sing N N 171 DT C7 H72 sing N N 172 DT C7 H73 sing N N 173 DT C6 H6 sing N N 174 HOH O H1 sing N N 175 HOH O H2 sing N N 176 MVA N CN sing N N 177 MVA N CA sing N N 178 MVA N H sing N N 179 MVA CN HN1 sing N N 180 MVA CN HN2 sing N N 181 MVA CN HN3 sing N N 182 MVA CA CB sing N N 183 MVA CA C sing N N 184 MVA CA HA sing N N 185 MVA CB CG1 sing N N 186 MVA CB CG2 sing N N 187 MVA CB HB sing N N 188 MVA CG1 HG11 sing N N 189 MVA CG1 HG12 sing N N 190 MVA CG1 HG13 sing N N 191 MVA CG2 HG21 sing N N 192 MVA CG2 HG22 sing N N 193 MVA CG2 HG23 sing N N 194 MVA C O doub N N 195 MVA C OXT sing N N 196 MVA OXT HXT sing N N 197 N2C N CA sing N N 198 N2C N CN sing N N 199 N2C N H sing N N 200 N2C CA CB sing N N 201 N2C CA C sing N N 202 N2C CA HA sing N N 203 N2C CB SG sing N N 204 N2C CB HB2 sing N N 205 N2C CB HB3 sing N N 206 N2C SG CD sing N N 207 N2C CD HD1 sing N N 208 N2C CD HD2 sing N N 209 N2C CD HD3 sing N N 210 N2C CN HN1 sing N N 211 N2C CN HN2 sing N N 212 N2C CN HN3 sing N N 213 N2C C O doub N N 214 N2C C OXT sing N N 215 N2C OXT HXT sing N N 216 NCY N CA sing N N 217 NCY N CN sing N N 218 NCY N H sing N N 219 NCY CA CB sing N N 220 NCY CA C sing N N 221 NCY CA HA sing N N 222 NCY CB SG sing N N 223 NCY CB HB2 sing N N 224 NCY CB HB3 sing N N 225 NCY SG HG sing N N 226 NCY CN HCN1 sing N N 227 NCY CN HCN2 sing N N 228 NCY CN HCN3 sing N N 229 NCY C O doub N N 230 NCY C OXT sing N N 231 NCY OXT HXT sing N N 232 QUI N1 C2 doub Y N 233 QUI N1 C9 sing Y N 234 QUI C2 C3 sing Y N 235 QUI C2 C sing N N 236 QUI C3 N4 doub Y N 237 QUI C3 H3 sing N N 238 QUI N4 C10 sing Y N 239 QUI C5 C6 doub Y N 240 QUI C5 C10 sing Y N 241 QUI C5 H5 sing N N 242 QUI C6 C7 sing Y N 243 QUI C6 H6 sing N N 244 QUI C7 C8 doub Y N 245 QUI C7 H7 sing N N 246 QUI C8 C9 sing Y N 247 QUI C8 H8 sing N N 248 QUI C9 C10 doub Y N 249 QUI C O1 doub N N 250 QUI C O2 sing N N 251 QUI O2 HO2 sing N N 252 # _ndb_struct_conf_na.entry_id 5YTY _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 7 1_555 0.223 -0.239 0.002 2.813 5.572 1.041 1 A_DA1:DT7_B A 1 ? B 7 ? 20 1 1 A DC 2 1_555 B DG 6 1_555 0.288 -0.190 0.044 -19.372 5.809 -2.018 2 A_DC2:DG6_B A 2 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.366 -0.081 0.027 21.066 4.123 -1.642 3 A_DG3:DC5_B A 3 ? B 5 ? 19 1 1 A DA 4 1_555 B DT 4 1_555 0.262 -0.283 0.357 -0.046 4.564 -0.266 4 A_DA4:DT4_B A 4 ? B 4 ? 20 1 1 A DC 5 1_555 B DG 3 1_555 0.350 -0.102 0.021 -21.182 4.608 -1.668 5 A_DC5:DG3_B A 5 ? B 3 ? 19 1 1 A DG 6 1_555 B DC 2 1_555 -0.286 -0.195 0.109 18.836 4.155 -2.428 6 A_DG6:DC2_B A 6 ? B 2 ? 19 1 1 A DT 7 1_555 B DA 1 1_555 -0.543 -0.204 0.075 -2.936 5.287 0.900 7 A_DT7:DA1_B A 7 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 7 1_555 A DC 2 1_555 B DG 6 1_555 0.235 0.904 6.907 9.283 -1.563 15.940 4.621 10.018 6.001 -5.097 -30.277 18.497 1 AA_DA1DC2:DG6DT7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 0.001 2.672 2.545 1.358 -0.202 10.889 14.216 1.622 2.476 -1.061 -7.117 10.975 2 AA_DC2DG3:DC5DG6_BB A 2 ? B 6 ? A 3 ? B 5 ? 1 A DG 3 1_555 B DC 5 1_555 A DA 4 1_555 B DT 4 1_555 -0.741 1.128 7.027 -13.079 -3.977 17.715 6.171 -8.811 5.816 -11.025 36.259 22.343 3 AA_DG3DA4:DT4DC5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DA 4 1_555 B DT 4 1_555 A DC 5 1_555 B DG 3 1_555 0.695 0.805 7.060 12.801 -4.394 14.560 6.942 11.403 5.458 -13.999 -40.784 19.854 4 AA_DA4DC5:DG3DT4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DC 5 1_555 B DG 3 1_555 A DG 6 1_555 B DC 2 1_555 0.032 2.639 2.553 -1.687 -0.548 11.021 14.190 -2.087 2.387 -2.827 8.707 11.163 5 AA_DC5DG6:DC2DG3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 A DG 6 1_555 B DC 2 1_555 A DT 7 1_555 B DA 1 1_555 -0.310 0.852 6.917 -9.118 -1.753 15.220 4.948 -10.431 5.991 -5.949 30.949 17.815 6 AA_DG6DT7:DA1DC2_BB A 6 ? B 2 ? A 7 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'MAGNESIUM ION' MG 5 'MANGANESE (II) ION' MN 6 2-CARBOXYQUINOXALINE QUI 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5YTZ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #