data_5YTZ # _entry.id 5YTZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5YTZ pdb_00005ytz 10.2210/pdb5ytz/pdb WWPDB D_1300005914 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5YTZ _pdbx_database_status.recvd_initial_deposition_date 2017-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 ? 'Wu, P.C.' 2 ? 'Kao, Y.F.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 46 _citation.language ? _citation.page_first 7396 _citation.page_last 7404 _citation.title 'Cooperative recognition of T:T mismatch by echinomycin causes structural distortions in DNA duplex' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gky345 _citation.pdbx_database_id_PubMed 29741655 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wu, P.C.' 1 ? primary 'Tzeng, S.L.' 2 ? primary 'Chang, C.K.' 3 ? primary 'Kao, Y.F.' 4 ? primary 'Waring, M.J.' 5 ? primary 'Hou, M.H.' 6 ? # _cell.entry_id 5YTZ _cell.length_a 41.759 _cell.length_b 41.759 _cell.length_c 138.415 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5YTZ _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*CP*GP*TP*CP*GP*(UD))-3') ; 2178.280 2 ? ? ? ? 2 polymer nat Echinomycin 809.008 2 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 4 non-polymer syn 2-CARBOXYQUINOXALINE 174.156 4 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 100 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DA)(DC)(DG)(DT)(DC)(DG)(BRU)' ACGTCGU A,B ? 2 'polypeptide(L)' no yes '(DSN)A(N2C)(MVA)(DSN)A(NCY)(MVA)' SAXVSAXV D,F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DC n 1 6 DG n 1 7 BRU n 2 1 DSN n 2 2 ALA n 2 3 N2C n 2 4 MVA n 2 5 DSN n 2 6 ALA n 2 7 NCY n 2 8 MVA n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 8 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces echinatus' _entity_src_nat.pdbx_ncbi_taxonomy_id 67293 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific unidentified _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32644 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5YTZ 5YTZ ? 1 ? 1 2 NOR 5YTZ NOR01126 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5YTZ A 1 ? 7 ? 5YTZ 1 ? 7 ? 1 7 2 1 5YTZ B 1 ? 7 ? 5YTZ 1 ? 7 ? 1 7 3 2 5YTZ D 1 ? 8 ? 5YTZ 1 ? 8 ? 1 8 4 2 5YTZ F 1 ? 8 ? 5YTZ 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MVA 'L-peptide linking' n N-METHYLVALINE ? 'C6 H13 N O2' 131.173 N2C 'L-peptide linking' . N,S-DIMETHYLCYSTEINE ? 'C5 H11 N O2 S' 149.211 NCY 'L-peptide linking' . N-METHYLCYSTEINE ? 'C4 H9 N O2 S' 135.185 QUI non-polymer . 2-CARBOXYQUINOXALINE ? 'C9 H6 N2 O2' 174.156 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5YTZ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;20mM MES (pH 6.0), 10mM MgCl2, 2mM spermine 4HCl, 2% 2-methyl-2,4-pentanediol (MPD), 10mM MnSO4 and 10mM KBr by equilibrating against 500 ul of 30% MPD reservoir solution. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92014 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE TPS 05A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.92014 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'TPS 05A' _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 5YTZ _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 1.550 _reflns.number_obs 16665 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rsym_value 0.037 _reflns.pdbx_netI_over_sigmaI 12.9000 _reflns.B_iso_Wilson_estimate 9.93 _reflns.pdbx_redundancy 17.30 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.141 _reflns_shell.pdbx_Rsym_value 0.141 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 12.50 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 908 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5YTZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 16665 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.383 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.16 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 98.4 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.235 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.895 _refine.ls_number_reflns_R_free 1649 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 22.55 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 3go3 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.139 _refine.pdbx_overall_phase_error 24.757 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 106 _refine_hist.pdbx_number_atoms_nucleic_acid 286 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 100 _refine_hist.number_atoms_total 543 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 27.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 482 'X-RAY DIFFRACTION' ? f_angle_d 1.344 ? ? 680 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 34.649 ? ? 178 'X-RAY DIFFRACTION' ? f_chiral_restr 0.079 ? ? 68 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 30 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.5517 1.5974 1112 0.2471 87.00 0.2714 . . 120 . . . . 'X-RAY DIFFRACTION' . 1.5974 1.6489 1220 0.2332 95.00 0.2886 . . 136 . . . . 'X-RAY DIFFRACTION' . 1.6489 1.7078 1240 0.2111 100.00 0.2348 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.7078 1.7762 1281 0.2427 100.00 0.2518 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.7762 1.8570 1270 0.2095 100.00 0.2307 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.8570 1.9549 1260 0.2166 100.00 0.2520 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.9549 2.0774 1280 0.2136 100.00 0.2298 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.0774 2.2377 1264 0.2128 100.00 0.2186 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.2377 2.4627 1283 0.2118 100.00 0.2644 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.4627 2.8188 1270 0.2078 100.00 0.2513 . . 139 . . . . 'X-RAY DIFFRACTION' . 2.8188 3.5501 1260 0.1847 99.00 0.2222 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.5501 27.1635 1276 0.1884 100.00 0.2139 . . 140 . . . . # _struct.entry_id 5YTZ _struct.title 'Crystal structure of echinomycin-d(ACGTCGT)2 complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5YTZ _struct_keywords.text ;Echinomycin, DNA intercalator, antibiotic, Echinomycin-DNA complex, mismatched base pairs, T-T mismatch, pyrimidine-pyrimidine base pairing, DNA mismatch repair (MMR), non-canonical duplex structure, ANTIBIOTIC-DNA complex ; _struct_keywords.pdbx_keywords ANTIBIOTIC/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 4 ? K N N 4 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 6 "O3'" ? ? ? 1_555 A BRU 7 P ? ? A DG 6 A BRU 7 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? B DG 6 "O3'" ? ? ? 1_555 B BRU 7 P ? ? B DG 6 B BRU 7 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? C DSN 1 C ? ? ? 1_555 C ALA 2 N ? ? D DSN 1 D ALA 2 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale one ? C DSN 1 OG ? ? ? 1_555 C MVA 8 C ? ? D DSN 1 D MVA 8 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale5 covale both ? C DSN 1 N ? ? ? 1_555 G QUI . C ? ? D DSN 1 D QUI 101 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale6 covale both ? C ALA 2 C ? ? ? 1_555 C N2C 3 N ? ? D ALA 2 D N2C 3 1_555 ? ? ? ? ? ? ? 1.312 ? ? covale7 covale both ? C N2C 3 C ? ? ? 1_555 C MVA 4 N ? ? D N2C 3 D MVA 4 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale8 covale both ? C N2C 3 CB ? ? ? 1_555 C NCY 7 SG ? ? D N2C 3 D NCY 7 1_555 ? ? ? ? ? ? ? 1.808 ? ? covale9 covale one ? C MVA 4 C ? ? ? 1_555 C DSN 5 OG ? ? D MVA 4 D DSN 5 1_555 ? ? ? ? ? ? ? 1.372 ? ? covale10 covale both ? C DSN 5 C ? ? ? 1_555 C ALA 6 N ? ? D DSN 5 D ALA 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? C DSN 5 N ? ? ? 1_555 H QUI . C ? ? D DSN 5 D QUI 102 1_555 ? ? ? ? ? ? ? 1.431 ? ? covale12 covale both ? C ALA 6 C ? ? ? 1_555 C NCY 7 N ? ? D ALA 6 D NCY 7 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale13 covale both ? C NCY 7 C ? ? ? 1_555 C MVA 8 N ? ? D NCY 7 D MVA 8 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale14 covale both ? D DSN 1 C ? ? ? 1_555 D ALA 2 N ? ? F DSN 1 F ALA 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale15 covale one ? D DSN 1 OG ? ? ? 1_555 D MVA 8 C ? ? F DSN 1 F MVA 8 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale16 covale both ? D DSN 1 N ? ? ? 1_555 J QUI . C ? ? F DSN 1 F QUI 101 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale17 covale both ? D ALA 2 C ? ? ? 1_555 D N2C 3 N ? ? F ALA 2 F N2C 3 1_555 ? ? ? ? ? ? ? 1.390 ? ? covale18 covale both ? D N2C 3 C ? ? ? 1_555 D MVA 4 N ? ? F N2C 3 F MVA 4 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale19 covale both ? D N2C 3 CB ? ? ? 1_555 D NCY 7 SG ? ? F N2C 3 F NCY 7 1_555 ? ? ? ? ? ? ? 1.807 ? ? covale20 covale one ? D MVA 4 C ? ? ? 1_555 D DSN 5 OG ? ? F MVA 4 F DSN 5 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale21 covale both ? D DSN 5 C ? ? ? 1_555 D ALA 6 N ? ? F DSN 5 F ALA 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale22 covale both ? D DSN 5 N ? ? ? 1_555 K QUI . C ? ? F DSN 5 F QUI 102 1_555 ? ? ? ? ? ? ? 1.429 ? ? covale23 covale both ? D ALA 6 C ? ? ? 1_555 D NCY 7 N ? ? F ALA 6 F NCY 7 1_555 ? ? ? ? ? ? ? 1.351 ? ? covale24 covale both ? D NCY 7 C ? ? ? 1_555 D MVA 8 N ? ? F NCY 7 F MVA 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 E MN . MN ? ? A DG 3 A MN 101 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc2 metalc ? ? A DG 3 N7 ? ? ? 1_555 E MN . MN ? ? A DG 3 A MN 101 10_565 ? ? ? ? ? ? ? 2.295 ? ? metalc3 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 205 1_555 ? ? ? ? ? ? ? 2.229 ? ? metalc4 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 205 10_565 ? ? ? ? ? ? ? 2.228 ? ? metalc5 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.176 ? ? metalc6 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 210 10_565 ? ? ? ? ? ? ? 2.176 ? ? metalc7 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 221 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc8 metalc ? ? E MN . MN ? ? ? 1_555 L HOH . O ? ? A MN 101 A HOH 221 10_565 ? ? ? ? ? ? ? 2.208 ? ? metalc9 metalc ? ? B DG 3 N7 ? ? ? 1_555 F MN . MN ? ? B DG 3 B MN 101 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc10 metalc ? ? B DG 3 N7 ? ? ? 1_555 F MN . MN ? ? B DG 3 B MN 101 10_565 ? ? ? ? ? ? ? 2.241 ? ? metalc11 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? B MN 101 B HOH 214 1_555 ? ? ? ? ? ? ? 2.208 ? ? metalc12 metalc ? ? F MN . MN ? ? ? 1_555 M HOH . O ? ? B MN 101 B HOH 214 10_565 ? ? ? ? ? ? ? 2.208 ? ? metalc13 metalc ? ? F MN . MN ? ? ? 1_555 O HOH . O ? ? B MN 101 F HOH 206 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc14 metalc ? ? F MN . MN ? ? ? 1_555 O HOH . O ? ? B MN 101 F HOH 206 10_565 ? ? ? ? ? ? ? 2.268 ? ? metalc15 metalc ? ? C N2C 3 O ? ? ? 1_555 I K . K ? ? D N2C 3 D K 103 1_555 ? ? ? ? ? ? ? 2.801 ? ? metalc16 metalc ? ? C N2C 3 O ? ? ? 1_555 I K . K ? ? D N2C 3 D K 103 8_555 ? ? ? ? ? ? ? 2.801 ? ? metalc17 metalc ? ? C MVA 4 O ? ? ? 1_555 I K . K ? ? D MVA 4 D K 103 1_555 ? ? ? ? ? ? ? 2.751 ? ? metalc18 metalc ? ? C MVA 4 O ? ? ? 1_555 I K . K ? ? D MVA 4 D K 103 8_555 ? ? ? ? ? ? ? 2.751 ? ? metalc19 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? D K 103 D HOH 202 1_555 ? ? ? ? ? ? ? 3.196 ? ? metalc20 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? D K 103 D HOH 202 8_555 ? ? ? ? ? ? ? 3.196 ? ? metalc21 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? D K 103 D HOH 205 1_555 ? ? ? ? ? ? ? 2.907 ? ? metalc22 metalc ? ? I K . K ? ? ? 1_555 N HOH . O ? ? D K 103 D HOH 205 8_555 ? ? ? ? ? ? ? 2.907 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B BRU 7 N3 ? ? A DA 1 B BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B BRU 7 O4 ? ? A DA 1 B BRU 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DT 4 O2 ? ? A DT 4 B DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DT 4 N3 ? ? A DT 4 B DT 4 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A BRU 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A BRU 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A BRU 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A BRU 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 101 ? 8 'binding site for residue MN A 101' AC2 Software B MN 101 ? 6 'binding site for residue MN B 101' AC3 Software D K 103 ? 6 'binding site for residue K D 103' AC4 Software D DSN 1 ? 10 'binding site for Di-peptide DSN D 1 and ALA D 2' AC5 Software D DSN 1 ? 10 'binding site for Di-peptide DSN D 1 and MVA D 8' AC6 Software D ALA 2 ? 14 'binding site for Di-peptide ALA D 2 and N2C D 3' AC7 Software D N2C 3 ? 13 'binding site for residues N2C D 3 and NCY D 7' AC8 Software D N2C 3 ? 13 'binding site for residues N2C D 3 and MVA D 4' AC9 Software D MVA 4 ? 13 'binding site for Di-peptide MVA D 4 and DSN D 5' AD1 Software D DSN 5 ? 10 'binding site for Di-peptide DSN D 5 and ALA D 6' AD2 Software D ALA 6 ? 10 'binding site for Di-peptide ALA D 6 and NCY D 7' AD3 Software D NCY 7 ? 8 'binding site for residues NCY D 7 and MVA D 8' AD4 Software D QUI 101 ? 11 'binding site for Di-peptide QUI D 101 and DSN D 1' AD5 Software D QUI 102 ? 10 'binding site for Di-peptide QUI D 102 and DSN D 5' AD6 Software F DSN 1 ? 11 'binding site for Di-peptide DSN F 1 and ALA F 2' AD7 Software F DSN 1 ? 13 'binding site for Di-peptide DSN F 1 and MVA F 8' AD8 Software F ALA 2 ? 10 'binding site for Di-peptide ALA F 2 and N2C F 3' AD9 Software F N2C 3 ? 10 'binding site for residues N2C F 3 and NCY F 7' AE1 Software F N2C 3 ? 8 'binding site for residues N2C F 3 and MVA F 4' AE2 Software F MVA 4 ? 10 'binding site for Di-peptide MVA F 4 and DSN F 5' AE3 Software F DSN 5 ? 11 'binding site for Di-peptide DSN F 5 and ALA F 6' AE4 Software F ALA 6 ? 12 'binding site for Di-peptide ALA F 6 and NCY F 7' AE5 Software F NCY 7 ? 13 'binding site for residues NCY F 7 and MVA F 8' AE6 Software F QUI 101 ? 10 'binding site for Di-peptide QUI F 101 and DSN F 1' AE7 Software F QUI 102 ? 10 'binding site for Di-peptide QUI F 102 and DSN F 5' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 8 DG A 3 ? DG A 3 . ? 10_565 ? 3 AC1 8 HOH L . ? HOH A 205 . ? 10_565 ? 4 AC1 8 HOH L . ? HOH A 205 . ? 1_555 ? 5 AC1 8 HOH L . ? HOH A 210 . ? 1_555 ? 6 AC1 8 HOH L . ? HOH A 210 . ? 10_565 ? 7 AC1 8 HOH L . ? HOH A 221 . ? 10_565 ? 8 AC1 8 HOH L . ? HOH A 221 . ? 1_555 ? 9 AC2 6 DG B 3 ? DG B 3 . ? 1_555 ? 10 AC2 6 DG B 3 ? DG B 3 . ? 10_565 ? 11 AC2 6 HOH M . ? HOH B 214 . ? 1_555 ? 12 AC2 6 HOH M . ? HOH B 214 . ? 10_565 ? 13 AC2 6 HOH O . ? HOH F 206 . ? 10_565 ? 14 AC2 6 HOH O . ? HOH F 206 . ? 1_555 ? 15 AC3 6 N2C C 3 ? N2C D 3 . ? 1_555 ? 16 AC3 6 N2C C 3 ? N2C D 3 . ? 8_555 ? 17 AC3 6 MVA C 4 ? MVA D 4 . ? 1_555 ? 18 AC3 6 MVA C 4 ? MVA D 4 . ? 8_555 ? 19 AC3 6 HOH N . ? HOH D 205 . ? 8_555 ? 20 AC3 6 HOH N . ? HOH D 205 . ? 1_555 ? 21 AC4 10 DG B 6 ? DG B 6 . ? 1_555 ? 22 AC4 10 BRU B 7 ? BRU B 7 . ? 1_555 ? 23 AC4 10 N2C C 3 ? N2C D 3 . ? 1_555 ? 24 AC4 10 MVA C 4 ? MVA D 4 . ? 1_555 ? 25 AC4 10 ALA C 6 ? ALA D 6 . ? 1_555 ? 26 AC4 10 NCY C 7 ? NCY D 7 . ? 1_555 ? 27 AC4 10 MVA C 8 ? MVA D 8 . ? 1_555 ? 28 AC4 10 QUI G . ? QUI D 101 . ? 1_555 ? 29 AC4 10 HOH N . ? HOH D 206 . ? 1_555 ? 30 AC4 10 N2C D 3 ? N2C F 3 . ? 8_555 ? 31 AC5 10 DC A 2 ? DC A 2 . ? 1_555 ? 32 AC5 10 DG B 6 ? DG B 6 . ? 1_555 ? 33 AC5 10 BRU B 7 ? BRU B 7 . ? 1_555 ? 34 AC5 10 ALA C 2 ? ALA D 2 . ? 1_555 ? 35 AC5 10 N2C C 3 ? N2C D 3 . ? 1_555 ? 36 AC5 10 ALA C 6 ? ALA D 6 . ? 1_555 ? 37 AC5 10 NCY C 7 ? NCY D 7 . ? 1_555 ? 38 AC5 10 QUI G . ? QUI D 101 . ? 1_555 ? 39 AC5 10 HOH N . ? HOH D 206 . ? 1_555 ? 40 AC5 10 N2C D 3 ? N2C F 3 . ? 8_555 ? 41 AC6 14 DG B 6 ? DG B 6 . ? 1_555 ? 42 AC6 14 DSN C 1 ? DSN D 1 . ? 1_555 ? 43 AC6 14 MVA C 4 ? MVA D 4 . ? 1_555 ? 44 AC6 14 MVA C 4 ? MVA D 4 . ? 8_555 ? 45 AC6 14 DSN C 5 ? DSN D 5 . ? 1_555 ? 46 AC6 14 ALA C 6 ? ALA D 6 . ? 1_555 ? 47 AC6 14 NCY C 7 ? NCY D 7 . ? 1_555 ? 48 AC6 14 MVA C 8 ? MVA D 8 . ? 1_555 ? 49 AC6 14 QUI G . ? QUI D 101 . ? 1_555 ? 50 AC6 14 K I . ? K D 103 . ? 8_555 ? 51 AC6 14 K I . ? K D 103 . ? 1_555 ? 52 AC6 14 DSN D 1 ? DSN F 1 . ? 8_555 ? 53 AC6 14 NCY D 7 ? NCY F 7 . ? 8_555 ? 54 AC6 14 MVA D 8 ? MVA F 8 . ? 8_555 ? 55 AC7 13 DSN C 1 ? DSN D 1 . ? 1_555 ? 56 AC7 13 ALA C 2 ? ALA D 2 . ? 1_555 ? 57 AC7 13 MVA C 4 ? MVA D 4 . ? 1_555 ? 58 AC7 13 MVA C 4 ? MVA D 4 . ? 8_555 ? 59 AC7 13 DSN C 5 ? DSN D 5 . ? 1_555 ? 60 AC7 13 ALA C 6 ? ALA D 6 . ? 1_555 ? 61 AC7 13 MVA C 8 ? MVA D 8 . ? 1_555 ? 62 AC7 13 K I . ? K D 103 . ? 1_555 ? 63 AC7 13 K I . ? K D 103 . ? 8_555 ? 64 AC7 13 HOH N . ? HOH D 201 . ? 1_555 ? 65 AC7 13 DSN D 1 ? DSN F 1 . ? 8_555 ? 66 AC7 13 NCY D 7 ? NCY F 7 . ? 8_555 ? 67 AC7 13 MVA D 8 ? MVA F 8 . ? 8_555 ? 68 AC8 13 DT B 4 ? DT B 4 . ? 1_555 ? 69 AC8 13 DSN C 1 ? DSN D 1 . ? 1_555 ? 70 AC8 13 ALA C 2 ? ALA D 2 . ? 1_555 ? 71 AC8 13 DSN C 5 ? DSN D 5 . ? 1_555 ? 72 AC8 13 ALA C 6 ? ALA D 6 . ? 1_555 ? 73 AC8 13 NCY C 7 ? NCY D 7 . ? 1_555 ? 74 AC8 13 K I . ? K D 103 . ? 8_555 ? 75 AC8 13 K I . ? K D 103 . ? 1_555 ? 76 AC8 13 HOH N . ? HOH D 202 . ? 1_555 ? 77 AC8 13 DSN D 1 ? DSN F 1 . ? 8_555 ? 78 AC8 13 NCY D 7 ? NCY F 7 . ? 8_555 ? 79 AC8 13 MVA D 8 ? MVA F 8 . ? 1_555 ? 80 AC8 13 MVA D 8 ? MVA F 8 . ? 8_555 ? 81 AC9 13 DG A 3 ? DG A 3 . ? 1_555 ? 82 AC9 13 DT A 4 ? DT A 4 . ? 1_555 ? 83 AC9 13 DT B 4 ? DT B 4 . ? 1_555 ? 84 AC9 13 ALA C 2 ? ALA D 2 . ? 1_555 ? 85 AC9 13 N2C C 3 ? N2C D 3 . ? 1_555 ? 86 AC9 13 N2C C 3 ? N2C D 3 . ? 8_555 ? 87 AC9 13 ALA C 6 ? ALA D 6 . ? 1_555 ? 88 AC9 13 QUI H . ? QUI D 102 . ? 1_555 ? 89 AC9 13 K I . ? K D 103 . ? 8_555 ? 90 AC9 13 K I . ? K D 103 . ? 1_555 ? 91 AC9 13 HOH N . ? HOH D 202 . ? 1_555 ? 92 AC9 13 HOH N . ? HOH D 205 . ? 1_555 ? 93 AC9 13 MVA D 8 ? MVA F 8 . ? 1_555 ? 94 AD1 10 DG A 3 ? DG A 3 . ? 1_555 ? 95 AD1 10 DT A 4 ? DT A 4 . ? 1_555 ? 96 AD1 10 ALA C 2 ? ALA D 2 . ? 1_555 ? 97 AD1 10 N2C C 3 ? N2C D 3 . ? 1_555 ? 98 AD1 10 MVA C 4 ? MVA D 4 . ? 1_555 ? 99 AD1 10 NCY C 7 ? NCY D 7 . ? 1_555 ? 100 AD1 10 MVA C 8 ? MVA D 8 . ? 1_555 ? 101 AD1 10 QUI H . ? QUI D 102 . ? 1_555 ? 102 AD1 10 HOH N . ? HOH D 205 . ? 1_555 ? 103 AD1 10 MVA D 8 ? MVA F 8 . ? 1_555 ? 104 AD2 10 DG A 3 ? DG A 3 . ? 1_555 ? 105 AD2 10 DSN C 1 ? DSN D 1 . ? 1_555 ? 106 AD2 10 ALA C 2 ? ALA D 2 . ? 1_555 ? 107 AD2 10 N2C C 3 ? N2C D 3 . ? 1_555 ? 108 AD2 10 MVA C 4 ? MVA D 4 . ? 1_555 ? 109 AD2 10 DSN C 5 ? DSN D 5 . ? 1_555 ? 110 AD2 10 MVA C 8 ? MVA D 8 . ? 1_555 ? 111 AD2 10 QUI H . ? QUI D 102 . ? 1_555 ? 112 AD2 10 HOH N . ? HOH D 201 . ? 1_555 ? 113 AD2 10 NCY D 7 ? NCY F 7 . ? 8_555 ? 114 AD3 8 DC A 2 ? DC A 2 . ? 1_555 ? 115 AD3 8 DG B 6 ? DG B 6 . ? 1_555 ? 116 AD3 8 DSN C 1 ? DSN D 1 . ? 1_555 ? 117 AD3 8 ALA C 2 ? ALA D 2 . ? 1_555 ? 118 AD3 8 N2C C 3 ? N2C D 3 . ? 1_555 ? 119 AD3 8 ALA C 6 ? ALA D 6 . ? 1_555 ? 120 AD3 8 HOH N . ? HOH D 201 . ? 1_555 ? 121 AD3 8 NCY D 7 ? NCY F 7 . ? 8_555 ? 122 AD4 11 DA A 1 ? DA A 1 . ? 1_555 ? 123 AD4 11 DC A 2 ? DC A 2 . ? 1_555 ? 124 AD4 11 DG B 6 ? DG B 6 . ? 1_555 ? 125 AD4 11 BRU B 7 ? BRU B 7 . ? 1_555 ? 126 AD4 11 ALA C 2 ? ALA D 2 . ? 1_555 ? 127 AD4 11 N2C C 3 ? N2C D 3 . ? 1_555 ? 128 AD4 11 NCY C 7 ? NCY D 7 . ? 1_555 ? 129 AD4 11 MVA C 8 ? MVA D 8 . ? 1_555 ? 130 AD4 11 HOH N . ? HOH D 203 . ? 1_555 ? 131 AD4 11 HOH N . ? HOH D 206 . ? 1_555 ? 132 AD4 11 N2C D 3 ? N2C F 3 . ? 8_555 ? 133 AD5 10 DG A 3 ? DG A 3 . ? 1_555 ? 134 AD5 10 DT A 4 ? DT A 4 . ? 1_555 ? 135 AD5 10 DT B 4 ? DT B 4 . ? 1_555 ? 136 AD5 10 DC B 5 ? DC B 5 . ? 1_555 ? 137 AD5 10 N2C C 3 ? N2C D 3 . ? 1_555 ? 138 AD5 10 MVA C 4 ? MVA D 4 . ? 1_555 ? 139 AD5 10 ALA C 6 ? ALA D 6 . ? 1_555 ? 140 AD5 10 HOH N . ? HOH D 204 . ? 1_555 ? 141 AD5 10 HOH N . ? HOH D 205 . ? 1_555 ? 142 AD5 10 MVA D 8 ? MVA F 8 . ? 1_555 ? 143 AD6 11 DC B 2 ? DC B 2 . ? 1_555 ? 144 AD6 11 DG B 3 ? DG B 3 . ? 1_555 ? 145 AD6 11 DT B 4 ? DT B 4 . ? 1_555 ? 146 AD6 11 N2C C 3 ? N2C D 3 . ? 8_555 ? 147 AD6 11 N2C D 3 ? N2C F 3 . ? 1_555 ? 148 AD6 11 MVA D 4 ? MVA F 4 . ? 1_555 ? 149 AD6 11 ALA D 6 ? ALA F 6 . ? 1_555 ? 150 AD6 11 NCY D 7 ? NCY F 7 . ? 1_555 ? 151 AD6 11 MVA D 8 ? MVA F 8 . ? 1_555 ? 152 AD6 11 QUI J . ? QUI F 101 . ? 1_555 ? 153 AD6 11 HOH O . ? HOH F 204 . ? 1_555 ? 154 AD7 13 DT A 4 ? DT A 4 . ? 1_555 ? 155 AD7 13 DC A 5 ? DC A 5 . ? 1_555 ? 156 AD7 13 DG B 3 ? DG B 3 . ? 1_555 ? 157 AD7 13 DT B 4 ? DT B 4 . ? 1_555 ? 158 AD7 13 N2C C 3 ? N2C D 3 . ? 8_555 ? 159 AD7 13 MVA C 4 ? MVA D 4 . ? 1_555 ? 160 AD7 13 DSN C 5 ? DSN D 5 . ? 1_555 ? 161 AD7 13 HOH N . ? HOH D 202 . ? 1_555 ? 162 AD7 13 ALA D 2 ? ALA F 2 . ? 1_555 ? 163 AD7 13 ALA D 6 ? ALA F 6 . ? 1_555 ? 164 AD7 13 NCY D 7 ? NCY F 7 . ? 1_555 ? 165 AD7 13 QUI J . ? QUI F 101 . ? 1_555 ? 166 AD7 13 HOH O . ? HOH F 204 . ? 1_555 ? 167 AD8 10 DC B 2 ? DC B 2 . ? 1_555 ? 168 AD8 10 DG B 3 ? DG B 3 . ? 1_555 ? 169 AD8 10 DSN C 1 ? DSN D 1 . ? 8_555 ? 170 AD8 10 DSN D 1 ? DSN F 1 . ? 1_555 ? 171 AD8 10 MVA D 4 ? MVA F 4 . ? 1_555 ? 172 AD8 10 DSN D 5 ? DSN F 5 . ? 1_555 ? 173 AD8 10 ALA D 6 ? ALA F 6 . ? 1_555 ? 174 AD8 10 NCY D 7 ? NCY F 7 . ? 1_555 ? 175 AD8 10 MVA D 8 ? MVA F 8 . ? 1_555 ? 176 AD8 10 QUI J . ? QUI F 101 . ? 1_555 ? 177 AD9 10 DSN C 1 ? DSN D 1 . ? 8_555 ? 178 AD9 10 N2C C 3 ? N2C D 3 . ? 8_555 ? 179 AD9 10 NCY C 7 ? NCY D 7 . ? 8_555 ? 180 AD9 10 DSN D 1 ? DSN F 1 . ? 1_555 ? 181 AD9 10 ALA D 2 ? ALA F 2 . ? 1_555 ? 182 AD9 10 MVA D 4 ? MVA F 4 . ? 1_555 ? 183 AD9 10 DSN D 5 ? DSN F 5 . ? 1_555 ? 184 AD9 10 ALA D 6 ? ALA F 6 . ? 1_555 ? 185 AD9 10 MVA D 8 ? MVA F 8 . ? 1_555 ? 186 AD9 10 HOH O . ? HOH F 202 . ? 1_555 ? 187 AE1 8 DG A 6 ? DG A 6 . ? 1_555 ? 188 AE1 8 DA B 1 ? DA B 1 . ? 1_555 ? 189 AE1 8 DC B 2 ? DC B 2 . ? 1_555 ? 190 AE1 8 DSN C 1 ? DSN D 1 . ? 8_555 ? 191 AE1 8 ALA D 2 ? ALA F 2 . ? 1_555 ? 192 AE1 8 DSN D 5 ? DSN F 5 . ? 1_555 ? 193 AE1 8 ALA D 6 ? ALA F 6 . ? 1_555 ? 194 AE1 8 NCY D 7 ? NCY F 7 . ? 1_555 ? 195 AE2 10 DG A 6 ? DG A 6 . ? 1_555 ? 196 AE2 10 BRU A 7 ? BRU A 7 . ? 1_555 ? 197 AE2 10 DA B 1 ? DA B 1 . ? 1_555 ? 198 AE2 10 DC B 2 ? DC B 2 . ? 1_555 ? 199 AE2 10 ALA D 2 ? ALA F 2 . ? 1_555 ? 200 AE2 10 N2C D 3 ? N2C F 3 . ? 1_555 ? 201 AE2 10 ALA D 6 ? ALA F 6 . ? 1_555 ? 202 AE2 10 QUI K . ? QUI F 102 . ? 1_555 ? 203 AE2 10 HOH O . ? HOH F 201 . ? 1_555 ? 204 AE2 10 HOH O . ? HOH F 205 . ? 1_555 ? 205 AE3 11 DC A 5 ? DC A 5 . ? 1_555 ? 206 AE3 11 DG A 6 ? DG A 6 . ? 1_555 ? 207 AE3 11 BRU A 7 ? BRU A 7 . ? 1_555 ? 208 AE3 11 ALA D 2 ? ALA F 2 . ? 1_555 ? 209 AE3 11 N2C D 3 ? N2C F 3 . ? 1_555 ? 210 AE3 11 MVA D 4 ? MVA F 4 . ? 1_555 ? 211 AE3 11 NCY D 7 ? NCY F 7 . ? 1_555 ? 212 AE3 11 MVA D 8 ? MVA F 8 . ? 1_555 ? 213 AE3 11 QUI K . ? QUI F 102 . ? 1_555 ? 214 AE3 11 HOH O . ? HOH F 201 . ? 1_555 ? 215 AE3 11 HOH O . ? HOH F 205 . ? 1_555 ? 216 AE4 12 DC A 5 ? DC A 5 . ? 1_555 ? 217 AE4 12 DG A 6 ? DG A 6 . ? 1_555 ? 218 AE4 12 N2C C 3 ? N2C D 3 . ? 8_555 ? 219 AE4 12 NCY C 7 ? NCY D 7 . ? 8_555 ? 220 AE4 12 DSN D 1 ? DSN F 1 . ? 1_555 ? 221 AE4 12 ALA D 2 ? ALA F 2 . ? 1_555 ? 222 AE4 12 N2C D 3 ? N2C F 3 . ? 1_555 ? 223 AE4 12 MVA D 4 ? MVA F 4 . ? 1_555 ? 224 AE4 12 DSN D 5 ? DSN F 5 . ? 1_555 ? 225 AE4 12 MVA D 8 ? MVA F 8 . ? 1_555 ? 226 AE4 12 QUI K . ? QUI F 102 . ? 1_555 ? 227 AE4 12 HOH O . ? HOH F 202 . ? 1_555 ? 228 AE5 13 DT A 4 ? DT A 4 . ? 1_555 ? 229 AE5 13 DC A 5 ? DC A 5 . ? 1_555 ? 230 AE5 13 DG B 3 ? DG B 3 . ? 1_555 ? 231 AE5 13 N2C C 3 ? N2C D 3 . ? 8_555 ? 232 AE5 13 MVA C 4 ? MVA D 4 . ? 1_555 ? 233 AE5 13 DSN C 5 ? DSN D 5 . ? 1_555 ? 234 AE5 13 NCY C 7 ? NCY D 7 . ? 8_555 ? 235 AE5 13 HOH N . ? HOH D 202 . ? 1_555 ? 236 AE5 13 DSN D 1 ? DSN F 1 . ? 1_555 ? 237 AE5 13 ALA D 2 ? ALA F 2 . ? 1_555 ? 238 AE5 13 N2C D 3 ? N2C F 3 . ? 1_555 ? 239 AE5 13 ALA D 6 ? ALA F 6 . ? 1_555 ? 240 AE5 13 HOH O . ? HOH F 202 . ? 1_555 ? 241 AE6 10 DT A 4 ? DT A 4 . ? 1_555 ? 242 AE6 10 DC A 5 ? DC A 5 . ? 1_555 ? 243 AE6 10 DG B 3 ? DG B 3 . ? 1_555 ? 244 AE6 10 DT B 4 ? DT B 4 . ? 1_555 ? 245 AE6 10 N2C C 3 ? N2C D 3 . ? 8_555 ? 246 AE6 10 ALA D 2 ? ALA F 2 . ? 1_555 ? 247 AE6 10 NCY D 7 ? NCY F 7 . ? 1_555 ? 248 AE6 10 MVA D 8 ? MVA F 8 . ? 1_555 ? 249 AE6 10 HOH O . ? HOH F 204 . ? 1_555 ? 250 AE6 10 HOH O . ? HOH F 206 . ? 1_555 ? 251 AE7 10 DG A 6 ? DG A 6 . ? 1_555 ? 252 AE7 10 BRU A 7 ? BRU A 7 . ? 1_555 ? 253 AE7 10 DA B 1 ? DA B 1 . ? 1_555 ? 254 AE7 10 DC B 2 ? DC B 2 . ? 1_555 ? 255 AE7 10 N2C D 3 ? N2C F 3 . ? 1_555 ? 256 AE7 10 MVA D 4 ? MVA F 4 . ? 1_555 ? 257 AE7 10 ALA D 6 ? ALA F 6 . ? 1_555 ? 258 AE7 10 HOH O . ? HOH F 201 . ? 1_555 ? 259 AE7 10 HOH O . ? HOH F 203 . ? 1_555 ? 260 AE7 10 HOH O . ? HOH F 205 . ? 1_555 ? # _atom_sites.entry_id 5YTZ _atom_sites.fract_transf_matrix[1][1] 0.023947 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023947 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007225 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 1.35700 25.34896 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 25.62398 1.50364 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? K ? ? ? ? ? ? ? ? ? K1+ ? ? 9.10364 8.85531 0.67653 14.62698 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? MN ? ? 20.23591 4.67902 2.76514 44.01191 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 19.97189 1.75589 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 15.80542 1.70748 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 1.42069 35.72801 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 1.23737 29.19336 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 BRU 7 7 7 BRU BRU A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DT 4 4 4 DT DT B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 BRU 7 7 7 BRU BRU B . n C 2 1 DSN 1 1 1 DSN DSN D . n C 2 2 ALA 2 2 2 ALA ALA D . n C 2 3 N2C 3 3 3 N2C N2C D . n C 2 4 MVA 4 4 4 MVA MVA D . n C 2 5 DSN 5 5 5 DSN DSN D . n C 2 6 ALA 6 6 6 ALA ALA D . n C 2 7 NCY 7 7 7 NCY NCY D . n C 2 8 MVA 8 8 8 MVA MVA D . n D 2 1 DSN 1 1 1 DSN DSN F . n D 2 2 ALA 2 2 2 ALA ALA F . n D 2 3 N2C 3 3 3 N2C N2C F . n D 2 4 MVA 4 4 4 MVA MVA F . n D 2 5 DSN 5 5 5 DSN DSN F . n D 2 6 ALA 6 6 6 ALA ALA F . n D 2 7 NCY 7 7 7 NCY NCY F . n D 2 8 MVA 8 8 8 MVA MVA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MN 1 101 1 MN MN A . F 3 MN 1 101 2 MN MN B . G 4 QUI 1 101 10 QUI QUI D . H 4 QUI 1 102 11 QUI QUI D . I 5 K 1 103 1 K K D . J 4 QUI 1 101 10 QUI QUI F . K 4 QUI 1 102 11 QUI QUI F . L 6 HOH 1 201 36 HOH HOH A . L 6 HOH 2 202 73 HOH HOH A . L 6 HOH 3 203 52 HOH HOH A . L 6 HOH 4 204 66 HOH HOH A . L 6 HOH 5 205 1 HOH HOH A . L 6 HOH 6 206 47 HOH HOH A . L 6 HOH 7 207 18 HOH HOH A . L 6 HOH 8 208 10 HOH HOH A . L 6 HOH 9 209 29 HOH HOH A . L 6 HOH 10 210 17 HOH HOH A . L 6 HOH 11 211 81 HOH HOH A . L 6 HOH 12 212 22 HOH HOH A . L 6 HOH 13 213 12 HOH HOH A . L 6 HOH 14 214 14 HOH HOH A . L 6 HOH 15 215 63 HOH HOH A . L 6 HOH 16 216 62 HOH HOH A . L 6 HOH 17 217 85 HOH HOH A . L 6 HOH 18 218 49 HOH HOH A . L 6 HOH 19 219 94 HOH HOH A . L 6 HOH 20 220 42 HOH HOH A . L 6 HOH 21 221 6 HOH HOH A . L 6 HOH 22 222 65 HOH HOH A . L 6 HOH 23 223 95 HOH HOH A . L 6 HOH 24 224 91 HOH HOH A . L 6 HOH 25 225 80 HOH HOH A . L 6 HOH 26 226 78 HOH HOH A . L 6 HOH 27 227 88 HOH HOH A . L 6 HOH 28 228 93 HOH HOH A . L 6 HOH 29 229 56 HOH HOH A . L 6 HOH 30 230 46 HOH HOH A . L 6 HOH 31 231 87 HOH HOH A . L 6 HOH 32 232 39 HOH HOH A . L 6 HOH 33 233 25 HOH HOH A . L 6 HOH 34 234 61 HOH HOH A . L 6 HOH 35 235 58 HOH HOH A . L 6 HOH 36 236 97 HOH HOH A . L 6 HOH 37 237 100 HOH HOH A . M 6 HOH 1 201 69 HOH HOH B . M 6 HOH 2 202 82 HOH HOH B . M 6 HOH 3 203 45 HOH HOH B . M 6 HOH 4 204 16 HOH HOH B . M 6 HOH 5 205 54 HOH HOH B . M 6 HOH 6 206 55 HOH HOH B . M 6 HOH 7 207 24 HOH HOH B . M 6 HOH 8 208 70 HOH HOH B . M 6 HOH 9 209 77 HOH HOH B . M 6 HOH 10 210 5 HOH HOH B . M 6 HOH 11 211 19 HOH HOH B . M 6 HOH 12 212 20 HOH HOH B . M 6 HOH 13 213 30 HOH HOH B . M 6 HOH 14 214 3 HOH HOH B . M 6 HOH 15 215 72 HOH HOH B . M 6 HOH 16 216 13 HOH HOH B . M 6 HOH 17 217 43 HOH HOH B . M 6 HOH 18 218 74 HOH HOH B . M 6 HOH 19 219 27 HOH HOH B . M 6 HOH 20 220 23 HOH HOH B . M 6 HOH 21 221 68 HOH HOH B . M 6 HOH 22 222 57 HOH HOH B . M 6 HOH 23 223 79 HOH HOH B . M 6 HOH 24 224 67 HOH HOH B . M 6 HOH 25 225 41 HOH HOH B . M 6 HOH 26 226 21 HOH HOH B . M 6 HOH 27 227 76 HOH HOH B . M 6 HOH 28 228 35 HOH HOH B . M 6 HOH 29 229 50 HOH HOH B . M 6 HOH 30 230 40 HOH HOH B . M 6 HOH 31 231 96 HOH HOH B . M 6 HOH 32 232 90 HOH HOH B . M 6 HOH 33 233 9 HOH HOH B . M 6 HOH 34 234 83 HOH HOH B . M 6 HOH 35 235 59 HOH HOH B . M 6 HOH 36 236 99 HOH HOH B . M 6 HOH 37 237 26 HOH HOH B . M 6 HOH 38 238 60 HOH HOH B . M 6 HOH 39 239 37 HOH HOH B . M 6 HOH 40 240 64 HOH HOH B . M 6 HOH 41 241 48 HOH HOH B . M 6 HOH 42 242 92 HOH HOH B . M 6 HOH 43 243 38 HOH HOH B . N 6 HOH 1 201 53 HOH HOH D . N 6 HOH 2 202 15 HOH HOH D . N 6 HOH 3 203 75 HOH HOH D . N 6 HOH 4 204 4 HOH HOH D . N 6 HOH 5 205 7 HOH HOH D . N 6 HOH 6 206 8 HOH HOH D . N 6 HOH 7 207 84 HOH HOH D . N 6 HOH 8 208 33 HOH HOH D . N 6 HOH 9 209 89 HOH HOH D . N 6 HOH 10 210 71 HOH HOH D . N 6 HOH 11 211 86 HOH HOH D . O 6 HOH 1 201 51 HOH HOH F . O 6 HOH 2 202 31 HOH HOH F . O 6 HOH 3 203 44 HOH HOH F . O 6 HOH 4 204 11 HOH HOH F . O 6 HOH 5 205 34 HOH HOH F . O 6 HOH 6 206 2 HOH HOH F . O 6 HOH 7 207 32 HOH HOH F . O 6 HOH 8 208 28 HOH HOH F . O 6 HOH 9 209 98 HOH HOH F . # _pdbx_molecule_features.prd_id PRD_000491 _pdbx_molecule_features.name Echinomycin _pdbx_molecule_features.type 'Cyclic depsipeptide' _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE. BICYCLIZATION IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI, AND A THIOACETAL BOND BETWEEN RESIDUES 3 AND 7. THE TWO QUINOXALINE CHROMOPHORES ARE LINKED TO THE D-SERINE RESIDUES, RESIDUES 1 AND 5. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000491 C 1 PRD_000491 D 1 PRD_000491 G 1 PRD_000491 H 1 PRD_000491 J 1 PRD_000491 K # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5610 ? 1 MORE 14 ? 1 'SSA (A^2)' 2470 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MN 101 ? E MN . 2 1 B MN 101 ? F MN . 3 1 D K 103 ? I K . 4 1 A HOH 210 ? L HOH . 5 1 A HOH 221 ? L HOH . 6 1 B HOH 205 ? M HOH . 7 1 B HOH 236 ? M HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 N7 ? A DG 3 ? A DG 3 ? 1_555 0.0 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 90.0 ? 3 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 90.0 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 205 ? 10_565 90.7 ? 5 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 205 ? 10_565 90.7 ? 6 O ? L HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 205 ? 10_565 165.4 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 1_555 92.5 ? 8 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 1_555 92.5 ? 9 O ? L HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 1_555 82.7 ? 10 O ? L HOH . ? A HOH 205 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 1_555 82.7 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 10_565 92.5 ? 12 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 10_565 92.5 ? 13 O ? L HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 10_565 82.7 ? 14 O ? L HOH . ? A HOH 205 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 10_565 82.7 ? 15 O ? L HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 210 ? 10_565 0.0 ? 16 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 87.5 ? 17 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 87.5 ? 18 O ? L HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 97.3 ? 19 O ? L HOH . ? A HOH 205 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 97.3 ? 20 O ? L HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 180.0 ? 21 O ? L HOH . ? A HOH 210 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 180.0 ? 22 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 87.5 ? 23 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 87.5 ? 24 O ? L HOH . ? A HOH 205 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 97.3 ? 25 O ? L HOH . ? A HOH 205 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 97.3 ? 26 O ? L HOH . ? A HOH 210 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 180.0 ? 27 O ? L HOH . ? A HOH 210 ? 10_565 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 179.9 ? 28 O ? L HOH . ? A HOH 221 ? 1_555 MN ? E MN . ? A MN 101 ? 1_555 O ? L HOH . ? A HOH 221 ? 10_565 0.0 ? 29 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 N7 ? B DG 3 ? B DG 3 ? 1_555 0.0 ? 30 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? M HOH . ? B HOH 214 ? 1_555 90.7 ? 31 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? M HOH . ? B HOH 214 ? 1_555 90.7 ? 32 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? M HOH . ? B HOH 214 ? 10_565 86.9 ? 33 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? M HOH . ? B HOH 214 ? 10_565 86.9 ? 34 O ? M HOH . ? B HOH 214 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? M HOH . ? B HOH 214 ? 10_565 98.2 ? 35 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 1_555 87.8 ? 36 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 1_555 87.8 ? 37 O ? M HOH . ? B HOH 214 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 1_555 87.5 ? 38 O ? M HOH . ? B HOH 214 ? 10_565 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 1_555 172.3 ? 39 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 10_565 94.9 ? 40 N7 ? B DG 3 ? B DG 3 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 10_565 94.9 ? 41 O ? M HOH . ? B HOH 214 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 10_565 172.3 ? 42 O ? M HOH . ? B HOH 214 ? 10_565 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 10_565 87.4 ? 43 O ? O HOH . ? F HOH 206 ? 1_555 MN ? F MN . ? B MN 101 ? 1_555 O ? O HOH . ? F HOH 206 ? 10_565 87.4 ? 44 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C N2C 3 ? D N2C 3 ? 1_555 0.0 ? 45 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C MVA 4 ? D MVA 4 ? 1_555 74.1 ? 46 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C MVA 4 ? D MVA 4 ? 1_555 74.1 ? 47 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C MVA 4 ? D MVA 4 ? 1_555 74.1 ? 48 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C MVA 4 ? D MVA 4 ? 1_555 74.1 ? 49 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? C MVA 4 ? D MVA 4 ? 1_555 0.0 ? 50 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 1_555 125.8 ? 51 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 1_555 125.8 ? 52 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 1_555 52.2 ? 53 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 1_555 52.2 ? 54 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 8_555 92.5 ? 55 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 8_555 92.5 ? 56 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 8_555 154.0 ? 57 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 8_555 154.0 ? 58 O ? N HOH . ? D HOH 202 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 202 ? 8_555 132.4 ? 59 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 92.8 ? 60 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 92.8 ? 61 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 83.4 ? 62 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 83.4 ? 63 O ? N HOH . ? D HOH 202 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 76.2 ? 64 O ? N HOH . ? D HOH 202 ? 8_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 1_555 74.9 ? 65 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 156.9 ? 66 O ? C N2C 3 ? D N2C 3 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 156.9 ? 67 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 123.6 ? 68 O ? C MVA 4 ? D MVA 4 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 123.6 ? 69 O ? N HOH . ? D HOH 202 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 74.9 ? 70 O ? N HOH . ? D HOH 202 ? 8_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 76.2 ? 71 O ? N HOH . ? D HOH 205 ? 1_555 K ? I K . ? D K 103 ? 1_555 O ? N HOH . ? D HOH 205 ? 8_555 103.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-05-30 3 'Structure model' 1 2 2018-09-05 4 'Structure model' 1 3 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Structure summary' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_entry_details 2 2 'Structure model' pdbx_molecule_features 3 2 'Structure model' struct_ref 4 3 'Structure model' citation 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' pdbx_struct_conn_angle 10 4 'Structure model' struct_conn 11 4 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_struct_ref.db_name' 2 2 'Structure model' '_struct_ref.pdbx_db_accession' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' 5 3 'Structure model' '_citation.page_last' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.conn_type_id' 26 4 'Structure model' '_struct_conn.id' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 4 'Structure model' '_struct_conn.ptnr2_symmetry' 44 4 'Structure model' '_struct_conn_type.id' # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x,z+3/4 3 y+1/2,-x,z+3/4 4 x+1/2,-y,-z+3/4 5 -x+1/2,y,-z+3/4 6 -x,-y,z 7 y,x,-z 8 -y,-x,-z 9 x+1/2,y+1/2,z+1/2 10 -y+1,x+1/2,z+5/4 11 y+1,-x+1/2,z+5/4 12 x+1,-y+1/2,-z+5/4 13 -x+1,y+1/2,-z+5/4 14 -x+1/2,-y+1/2,z+1/2 15 y+1/2,x+1/2,-z+1/2 16 -y+1/2,-x+1/2,-z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1_2155 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 7.0.005 6 # _pdbx_entry_details.entry_id 5YTZ _pdbx_entry_details.compound_details ;THE ECHINOMYCIN IS A BICYCLIC OCTADEPSIPEPTIDE, A MEMBER OF THE QUINOXALINE CLASS OF ANTIBIOTICS. HERE, ECHINOMYCIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) AND TWO LIGANDS (HET) QUI. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 202 ? ? O B HOH 234 ? ? 1.88 2 1 O B HOH 208 ? ? O B HOH 239 ? ? 2.03 3 1 O A HOH 208 ? ? O A HOH 226 ? ? 2.06 4 1 OP1 B DG 6 ? ? O B HOH 201 ? ? 2.14 5 1 O B HOH 225 ? ? O B HOH 238 ? ? 2.18 6 1 "O3'" B DA 1 ? ? O B HOH 202 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 219 ? ? 1_555 O A HOH 219 ? ? 10_565 2.03 2 1 O A HOH 219 ? ? 1_555 O A HOH 233 ? ? 10_565 2.05 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 242 ? 6.35 . 2 1 O ? B HOH 243 ? 6.92 . 3 1 O ? D HOH 211 ? . 7.18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 BRU N1 N N N 14 BRU C2 C N N 15 BRU N3 N N N 16 BRU C4 C N N 17 BRU C5 C N N 18 BRU C6 C N N 19 BRU O2 O N N 20 BRU O4 O N N 21 BRU BR BR N N 22 BRU "C1'" C N R 23 BRU "C2'" C N N 24 BRU "C3'" C N S 25 BRU "C4'" C N R 26 BRU "O3'" O N N 27 BRU "O4'" O N N 28 BRU "C5'" C N N 29 BRU "O5'" O N N 30 BRU P P N N 31 BRU OP1 O N N 32 BRU OP2 O N N 33 BRU OP3 O N N 34 BRU HN3 H N N 35 BRU H6 H N N 36 BRU "H1'" H N N 37 BRU "H2'" H N N 38 BRU "H2''" H N N 39 BRU "H3'" H N N 40 BRU "H4'" H N N 41 BRU "HO3'" H N N 42 BRU "H5'" H N N 43 BRU "H5''" H N N 44 BRU HOP2 H N N 45 BRU HOP3 H N N 46 DA OP3 O N N 47 DA P P N N 48 DA OP1 O N N 49 DA OP2 O N N 50 DA "O5'" O N N 51 DA "C5'" C N N 52 DA "C4'" C N R 53 DA "O4'" O N N 54 DA "C3'" C N S 55 DA "O3'" O N N 56 DA "C2'" C N N 57 DA "C1'" C N R 58 DA N9 N Y N 59 DA C8 C Y N 60 DA N7 N Y N 61 DA C5 C Y N 62 DA C6 C Y N 63 DA N6 N N N 64 DA N1 N Y N 65 DA C2 C Y N 66 DA N3 N Y N 67 DA C4 C Y N 68 DA HOP3 H N N 69 DA HOP2 H N N 70 DA "H5'" H N N 71 DA "H5''" H N N 72 DA "H4'" H N N 73 DA "H3'" H N N 74 DA "HO3'" H N N 75 DA "H2'" H N N 76 DA "H2''" H N N 77 DA "H1'" H N N 78 DA H8 H N N 79 DA H61 H N N 80 DA H62 H N N 81 DA H2 H N N 82 DC OP3 O N N 83 DC P P N N 84 DC OP1 O N N 85 DC OP2 O N N 86 DC "O5'" O N N 87 DC "C5'" C N N 88 DC "C4'" C N R 89 DC "O4'" O N N 90 DC "C3'" C N S 91 DC "O3'" O N N 92 DC "C2'" C N N 93 DC "C1'" C N R 94 DC N1 N N N 95 DC C2 C N N 96 DC O2 O N N 97 DC N3 N N N 98 DC C4 C N N 99 DC N4 N N N 100 DC C5 C N N 101 DC C6 C N N 102 DC HOP3 H N N 103 DC HOP2 H N N 104 DC "H5'" H N N 105 DC "H5''" H N N 106 DC "H4'" H N N 107 DC "H3'" H N N 108 DC "HO3'" H N N 109 DC "H2'" H N N 110 DC "H2''" H N N 111 DC "H1'" H N N 112 DC H41 H N N 113 DC H42 H N N 114 DC H5 H N N 115 DC H6 H N N 116 DG OP3 O N N 117 DG P P N N 118 DG OP1 O N N 119 DG OP2 O N N 120 DG "O5'" O N N 121 DG "C5'" C N N 122 DG "C4'" C N R 123 DG "O4'" O N N 124 DG "C3'" C N S 125 DG "O3'" O N N 126 DG "C2'" C N N 127 DG "C1'" C N R 128 DG N9 N Y N 129 DG C8 C Y N 130 DG N7 N Y N 131 DG C5 C Y N 132 DG C6 C N N 133 DG O6 O N N 134 DG N1 N N N 135 DG C2 C N N 136 DG N2 N N N 137 DG N3 N N N 138 DG C4 C Y N 139 DG HOP3 H N N 140 DG HOP2 H N N 141 DG "H5'" H N N 142 DG "H5''" H N N 143 DG "H4'" H N N 144 DG "H3'" H N N 145 DG "HO3'" H N N 146 DG "H2'" H N N 147 DG "H2''" H N N 148 DG "H1'" H N N 149 DG H8 H N N 150 DG H1 H N N 151 DG H21 H N N 152 DG H22 H N N 153 DSN N N N N 154 DSN CA C N R 155 DSN C C N N 156 DSN O O N N 157 DSN OXT O N N 158 DSN CB C N N 159 DSN OG O N N 160 DSN H H N N 161 DSN H2 H N N 162 DSN HA H N N 163 DSN HXT H N N 164 DSN HB2 H N N 165 DSN HB3 H N N 166 DSN HG H N N 167 DT OP3 O N N 168 DT P P N N 169 DT OP1 O N N 170 DT OP2 O N N 171 DT "O5'" O N N 172 DT "C5'" C N N 173 DT "C4'" C N R 174 DT "O4'" O N N 175 DT "C3'" C N S 176 DT "O3'" O N N 177 DT "C2'" C N N 178 DT "C1'" C N R 179 DT N1 N N N 180 DT C2 C N N 181 DT O2 O N N 182 DT N3 N N N 183 DT C4 C N N 184 DT O4 O N N 185 DT C5 C N N 186 DT C7 C N N 187 DT C6 C N N 188 DT HOP3 H N N 189 DT HOP2 H N N 190 DT "H5'" H N N 191 DT "H5''" H N N 192 DT "H4'" H N N 193 DT "H3'" H N N 194 DT "HO3'" H N N 195 DT "H2'" H N N 196 DT "H2''" H N N 197 DT "H1'" H N N 198 DT H3 H N N 199 DT H71 H N N 200 DT H72 H N N 201 DT H73 H N N 202 DT H6 H N N 203 HOH O O N N 204 HOH H1 H N N 205 HOH H2 H N N 206 K K K N N 207 MN MN MN N N 208 MVA N N N N 209 MVA CN C N N 210 MVA CA C N S 211 MVA CB C N N 212 MVA CG1 C N N 213 MVA CG2 C N N 214 MVA C C N N 215 MVA O O N N 216 MVA OXT O N N 217 MVA H H N N 218 MVA HN1 H N N 219 MVA HN2 H N N 220 MVA HN3 H N N 221 MVA HA H N N 222 MVA HB H N N 223 MVA HG11 H N N 224 MVA HG12 H N N 225 MVA HG13 H N N 226 MVA HG21 H N N 227 MVA HG22 H N N 228 MVA HG23 H N N 229 MVA HXT H N N 230 N2C N N N N 231 N2C CA C N R 232 N2C CB C N N 233 N2C SG S N N 234 N2C CD C N N 235 N2C CN C N N 236 N2C C C N N 237 N2C O O N N 238 N2C OXT O N N 239 N2C H H N N 240 N2C HA H N N 241 N2C HB2 H N N 242 N2C HB3 H N N 243 N2C HD1 H N N 244 N2C HD2 H N N 245 N2C HD3 H N N 246 N2C HN1 H N N 247 N2C HN2 H N N 248 N2C HN3 H N N 249 N2C HXT H N N 250 NCY N N N N 251 NCY CA C N R 252 NCY CB C N N 253 NCY SG S N N 254 NCY CN C N N 255 NCY C C N N 256 NCY O O N N 257 NCY OXT O N N 258 NCY H H N N 259 NCY HA H N N 260 NCY HB2 H N N 261 NCY HB3 H N N 262 NCY HG H N N 263 NCY HCN1 H N N 264 NCY HCN2 H N N 265 NCY HCN3 H N N 266 NCY HXT H N N 267 QUI N1 N Y N 268 QUI C2 C Y N 269 QUI C3 C Y N 270 QUI N4 N Y N 271 QUI C5 C Y N 272 QUI C6 C Y N 273 QUI C7 C Y N 274 QUI C8 C Y N 275 QUI C9 C Y N 276 QUI C10 C Y N 277 QUI C C N N 278 QUI O1 O N N 279 QUI O2 O N N 280 QUI H3 H N N 281 QUI H5 H N N 282 QUI H6 H N N 283 QUI H7 H N N 284 QUI H8 H N N 285 QUI HO2 H N N 286 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 BRU N1 C2 sing N N 13 BRU N1 C6 sing N N 14 BRU N1 "C1'" sing N N 15 BRU C2 N3 sing N N 16 BRU C2 O2 doub N N 17 BRU N3 C4 sing N N 18 BRU N3 HN3 sing N N 19 BRU C4 C5 sing N N 20 BRU C4 O4 doub N N 21 BRU C5 C6 doub N N 22 BRU C5 BR sing N N 23 BRU C6 H6 sing N N 24 BRU "C1'" "C2'" sing N N 25 BRU "C1'" "O4'" sing N N 26 BRU "C1'" "H1'" sing N N 27 BRU "C2'" "C3'" sing N N 28 BRU "C2'" "H2'" sing N N 29 BRU "C2'" "H2''" sing N N 30 BRU "C3'" "C4'" sing N N 31 BRU "C3'" "O3'" sing N N 32 BRU "C3'" "H3'" sing N N 33 BRU "C4'" "O4'" sing N N 34 BRU "C4'" "C5'" sing N N 35 BRU "C4'" "H4'" sing N N 36 BRU "O3'" "HO3'" sing N N 37 BRU "C5'" "O5'" sing N N 38 BRU "C5'" "H5'" sing N N 39 BRU "C5'" "H5''" sing N N 40 BRU "O5'" P sing N N 41 BRU P OP1 doub N N 42 BRU P OP2 sing N N 43 BRU P OP3 sing N N 44 BRU OP2 HOP2 sing N N 45 BRU OP3 HOP3 sing N N 46 DA OP3 P sing N N 47 DA OP3 HOP3 sing N N 48 DA P OP1 doub N N 49 DA P OP2 sing N N 50 DA P "O5'" sing N N 51 DA OP2 HOP2 sing N N 52 DA "O5'" "C5'" sing N N 53 DA "C5'" "C4'" sing N N 54 DA "C5'" "H5'" sing N N 55 DA "C5'" "H5''" sing N N 56 DA "C4'" "O4'" sing N N 57 DA "C4'" "C3'" sing N N 58 DA "C4'" "H4'" sing N N 59 DA "O4'" "C1'" sing N N 60 DA "C3'" "O3'" sing N N 61 DA "C3'" "C2'" sing N N 62 DA "C3'" "H3'" sing N N 63 DA "O3'" "HO3'" sing N N 64 DA "C2'" "C1'" sing N N 65 DA "C2'" "H2'" sing N N 66 DA "C2'" "H2''" sing N N 67 DA "C1'" N9 sing N N 68 DA "C1'" "H1'" sing N N 69 DA N9 C8 sing Y N 70 DA N9 C4 sing Y N 71 DA C8 N7 doub Y N 72 DA C8 H8 sing N N 73 DA N7 C5 sing Y N 74 DA C5 C6 sing Y N 75 DA C5 C4 doub Y N 76 DA C6 N6 sing N N 77 DA C6 N1 doub Y N 78 DA N6 H61 sing N N 79 DA N6 H62 sing N N 80 DA N1 C2 sing Y N 81 DA C2 N3 doub Y N 82 DA C2 H2 sing N N 83 DA N3 C4 sing Y N 84 DC OP3 P sing N N 85 DC OP3 HOP3 sing N N 86 DC P OP1 doub N N 87 DC P OP2 sing N N 88 DC P "O5'" sing N N 89 DC OP2 HOP2 sing N N 90 DC "O5'" "C5'" sing N N 91 DC "C5'" "C4'" sing N N 92 DC "C5'" "H5'" sing N N 93 DC "C5'" "H5''" sing N N 94 DC "C4'" "O4'" sing N N 95 DC "C4'" "C3'" sing N N 96 DC "C4'" "H4'" sing N N 97 DC "O4'" "C1'" sing N N 98 DC "C3'" "O3'" sing N N 99 DC "C3'" "C2'" sing N N 100 DC "C3'" "H3'" sing N N 101 DC "O3'" "HO3'" sing N N 102 DC "C2'" "C1'" sing N N 103 DC "C2'" "H2'" sing N N 104 DC "C2'" "H2''" sing N N 105 DC "C1'" N1 sing N N 106 DC "C1'" "H1'" sing N N 107 DC N1 C2 sing N N 108 DC N1 C6 sing N N 109 DC C2 O2 doub N N 110 DC C2 N3 sing N N 111 DC N3 C4 doub N N 112 DC C4 N4 sing N N 113 DC C4 C5 sing N N 114 DC N4 H41 sing N N 115 DC N4 H42 sing N N 116 DC C5 C6 doub N N 117 DC C5 H5 sing N N 118 DC C6 H6 sing N N 119 DG OP3 P sing N N 120 DG OP3 HOP3 sing N N 121 DG P OP1 doub N N 122 DG P OP2 sing N N 123 DG P "O5'" sing N N 124 DG OP2 HOP2 sing N N 125 DG "O5'" "C5'" sing N N 126 DG "C5'" "C4'" sing N N 127 DG "C5'" "H5'" sing N N 128 DG "C5'" "H5''" sing N N 129 DG "C4'" "O4'" sing N N 130 DG "C4'" "C3'" sing N N 131 DG "C4'" "H4'" sing N N 132 DG "O4'" "C1'" sing N N 133 DG "C3'" "O3'" sing N N 134 DG "C3'" "C2'" sing N N 135 DG "C3'" "H3'" sing N N 136 DG "O3'" "HO3'" sing N N 137 DG "C2'" "C1'" sing N N 138 DG "C2'" "H2'" sing N N 139 DG "C2'" "H2''" sing N N 140 DG "C1'" N9 sing N N 141 DG "C1'" "H1'" sing N N 142 DG N9 C8 sing Y N 143 DG N9 C4 sing Y N 144 DG C8 N7 doub Y N 145 DG C8 H8 sing N N 146 DG N7 C5 sing Y N 147 DG C5 C6 sing N N 148 DG C5 C4 doub Y N 149 DG C6 O6 doub N N 150 DG C6 N1 sing N N 151 DG N1 C2 sing N N 152 DG N1 H1 sing N N 153 DG C2 N2 sing N N 154 DG C2 N3 doub N N 155 DG N2 H21 sing N N 156 DG N2 H22 sing N N 157 DG N3 C4 sing N N 158 DSN N CA sing N N 159 DSN N H sing N N 160 DSN N H2 sing N N 161 DSN CA C sing N N 162 DSN CA CB sing N N 163 DSN CA HA sing N N 164 DSN C O doub N N 165 DSN C OXT sing N N 166 DSN OXT HXT sing N N 167 DSN CB OG sing N N 168 DSN CB HB2 sing N N 169 DSN CB HB3 sing N N 170 DSN OG HG sing N N 171 DT OP3 P sing N N 172 DT OP3 HOP3 sing N N 173 DT P OP1 doub N N 174 DT P OP2 sing N N 175 DT P "O5'" sing N N 176 DT OP2 HOP2 sing N N 177 DT "O5'" "C5'" sing N N 178 DT "C5'" "C4'" sing N N 179 DT "C5'" "H5'" sing N N 180 DT "C5'" "H5''" sing N N 181 DT "C4'" "O4'" sing N N 182 DT "C4'" "C3'" sing N N 183 DT "C4'" "H4'" sing N N 184 DT "O4'" "C1'" sing N N 185 DT "C3'" "O3'" sing N N 186 DT "C3'" "C2'" sing N N 187 DT "C3'" "H3'" sing N N 188 DT "O3'" "HO3'" sing N N 189 DT "C2'" "C1'" sing N N 190 DT "C2'" "H2'" sing N N 191 DT "C2'" "H2''" sing N N 192 DT "C1'" N1 sing N N 193 DT "C1'" "H1'" sing N N 194 DT N1 C2 sing N N 195 DT N1 C6 sing N N 196 DT C2 O2 doub N N 197 DT C2 N3 sing N N 198 DT N3 C4 sing N N 199 DT N3 H3 sing N N 200 DT C4 O4 doub N N 201 DT C4 C5 sing N N 202 DT C5 C7 sing N N 203 DT C5 C6 doub N N 204 DT C7 H71 sing N N 205 DT C7 H72 sing N N 206 DT C7 H73 sing N N 207 DT C6 H6 sing N N 208 HOH O H1 sing N N 209 HOH O H2 sing N N 210 MVA N CN sing N N 211 MVA N CA sing N N 212 MVA N H sing N N 213 MVA CN HN1 sing N N 214 MVA CN HN2 sing N N 215 MVA CN HN3 sing N N 216 MVA CA CB sing N N 217 MVA CA C sing N N 218 MVA CA HA sing N N 219 MVA CB CG1 sing N N 220 MVA CB CG2 sing N N 221 MVA CB HB sing N N 222 MVA CG1 HG11 sing N N 223 MVA CG1 HG12 sing N N 224 MVA CG1 HG13 sing N N 225 MVA CG2 HG21 sing N N 226 MVA CG2 HG22 sing N N 227 MVA CG2 HG23 sing N N 228 MVA C O doub N N 229 MVA C OXT sing N N 230 MVA OXT HXT sing N N 231 N2C N CA sing N N 232 N2C N CN sing N N 233 N2C N H sing N N 234 N2C CA CB sing N N 235 N2C CA C sing N N 236 N2C CA HA sing N N 237 N2C CB SG sing N N 238 N2C CB HB2 sing N N 239 N2C CB HB3 sing N N 240 N2C SG CD sing N N 241 N2C CD HD1 sing N N 242 N2C CD HD2 sing N N 243 N2C CD HD3 sing N N 244 N2C CN HN1 sing N N 245 N2C CN HN2 sing N N 246 N2C CN HN3 sing N N 247 N2C C O doub N N 248 N2C C OXT sing N N 249 N2C OXT HXT sing N N 250 NCY N CA sing N N 251 NCY N CN sing N N 252 NCY N H sing N N 253 NCY CA CB sing N N 254 NCY CA C sing N N 255 NCY CA HA sing N N 256 NCY CB SG sing N N 257 NCY CB HB2 sing N N 258 NCY CB HB3 sing N N 259 NCY SG HG sing N N 260 NCY CN HCN1 sing N N 261 NCY CN HCN2 sing N N 262 NCY CN HCN3 sing N N 263 NCY C O doub N N 264 NCY C OXT sing N N 265 NCY OXT HXT sing N N 266 QUI N1 C2 doub Y N 267 QUI N1 C9 sing Y N 268 QUI C2 C3 sing Y N 269 QUI C2 C sing N N 270 QUI C3 N4 doub Y N 271 QUI C3 H3 sing N N 272 QUI N4 C10 sing Y N 273 QUI C5 C6 doub Y N 274 QUI C5 C10 sing Y N 275 QUI C5 H5 sing N N 276 QUI C6 C7 sing Y N 277 QUI C6 H6 sing N N 278 QUI C7 C8 doub Y N 279 QUI C7 H7 sing N N 280 QUI C8 C9 sing Y N 281 QUI C8 H8 sing N N 282 QUI C9 C10 doub Y N 283 QUI C O1 doub N N 284 QUI C O2 sing N N 285 QUI O2 HO2 sing N N 286 # _ndb_struct_conf_na.entry_id 5YTZ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B BRU 7 1_555 -0.012 -0.112 0.316 11.102 2.708 3.743 1 A_DA1:BRU7_B A 1 ? B 7 ? 20 1 1 A DC 2 1_555 B DG 6 1_555 0.171 -0.178 0.265 -19.429 2.939 -2.177 2 A_DC2:DG6_B A 2 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.278 -0.090 0.177 19.521 4.079 0.071 3 A_DG3:DC5_B A 3 ? B 5 ? 19 1 1 A DT 4 1_555 B DT 4 1_555 -2.374 -1.820 0.211 -5.922 5.071 14.868 4 A_DT4:DT4_B A 4 ? B 4 ? 16 1 1 A DC 5 1_555 B DG 3 1_555 0.304 -0.189 0.251 -22.297 0.072 -2.039 5 A_DC5:DG3_B A 5 ? B 3 ? 19 1 1 A DG 6 1_555 B DC 2 1_555 -0.305 -0.098 0.167 21.013 3.500 -2.070 6 A_DG6:DC2_B A 6 ? B 2 ? 19 1 1 A BRU 7 1_555 B DA 1 1_555 0.498 -0.307 0.408 -8.872 6.989 -3.577 7 A_BRU7:DA1_B A 7 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 0.142 2.821 2.505 1.260 1.286 12.826 11.344 0.510 2.774 5.720 -5.605 12.951 1 AA_DC2DG3:DC5DG6_BB A 2 ? B 6 ? A 3 ? B 5 ? 1 A DG 3 1_555 B DC 5 1_555 A DT 4 1_555 B DT 4 1_555 -0.875 1.017 7.051 -8.570 -3.085 -5.518 5.104 -34.110 3.249 19.937 -55.377 -10.646 2 AA_DG3DT4:DT4DC5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DT 4 1_555 B DT 4 1_555 A DC 5 1_555 B DG 3 1_555 0.598 2.966 6.852 11.873 -5.127 43.461 4.802 1.418 6.423 -6.748 -15.626 45.255 3 AA_DT4DC5:DG3DT4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DC 5 1_555 B DG 3 1_555 A DG 6 1_555 B DC 2 1_555 -0.039 1.920 2.517 -0.361 1.806 3.372 7.609 -3.622 3.115 28.096 5.610 3.843 4 AA_DC5DG6:DC2DG3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 A DG 6 1_555 B DC 2 1_555 A BRU 7 1_555 B DA 1 1_555 -1.110 1.024 7.285 -9.192 -2.518 34.250 2.513 -1.222 7.242 -4.177 15.246 35.513 5 AA_DG6BRU7:DA1DC2_BB A 6 ? B 2 ? A 7 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 2-CARBOXYQUINOXALINE QUI 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GO3 _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'I 41 2 2' _space_group.name_Hall 'I 4bw 2bw' _space_group.IT_number 98 _space_group.crystal_system tetragonal _space_group.id 1 #