HEADER DNA BINDING PROTEIN/DNA 23-NOV-17 5YV3 TITLE DNA POLYMERASE IV - DNA TERNARY COMPLEX 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F, A; COMPND 4 SYNONYM: POL IV,TRANSLESION SYNTHESIS POLYMERASE IV,TSL POLYMERASE COMPND 5 IV; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DTN1; COMPND 10 CHAIN: G, B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DTN2; COMPND 14 CHAIN: H, C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DINB, DINP, B0231, JW0221; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 15 ORGANISM_TAXID: 83333 KEYWDS DNA POLYMERASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.KOTTUR,D.T.NAIR REVDAT 2 22-NOV-23 5YV3 1 LINK REVDAT 1 07-NOV-18 5YV3 0 JRNL AUTH J.KOTTUR,D.T.NAIR JRNL TITL PYROPHOSPHATE HYDROLYSIS IS AN INTRINSIC AND CRITICAL STEP JRNL TITL 2 OF THE DNA SYNTHESIS REACTION JRNL REF NUCLEIC ACIDS RES. V. 46 5875 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29850882 JRNL DOI 10.1093/NAR/GKY402 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 68895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 6675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.8218 - 6.3054 0.98 4155 254 0.1548 0.1690 REMARK 3 2 6.3054 - 5.0058 0.98 4188 223 0.1723 0.2187 REMARK 3 3 5.0058 - 4.3734 0.97 4125 235 0.1565 0.2190 REMARK 3 4 4.3734 - 3.9736 0.99 4294 179 0.1547 0.2190 REMARK 3 5 3.9736 - 3.6889 0.99 4212 263 0.1693 0.2272 REMARK 3 6 3.6889 - 3.4714 0.97 4143 224 0.1791 0.2166 REMARK 3 7 3.4714 - 3.2976 0.96 4113 190 0.1908 0.2058 REMARK 3 8 3.2976 - 3.1541 0.97 4153 205 0.2124 0.2648 REMARK 3 9 3.1541 - 3.0327 0.98 4198 219 0.2243 0.2761 REMARK 3 10 3.0327 - 2.9280 0.99 4273 199 0.2432 0.2874 REMARK 3 11 2.9280 - 2.8365 0.98 4235 196 0.2444 0.2764 REMARK 3 12 2.8365 - 2.7554 0.99 4176 264 0.2495 0.2925 REMARK 3 13 2.7554 - 2.6829 0.97 4108 233 0.2582 0.3366 REMARK 3 14 2.6829 - 2.6174 0.94 4057 212 0.2670 0.3328 REMARK 3 15 2.6174 - 2.5579 0.96 4019 228 0.2514 0.3702 REMARK 3 16 2.5579 - 2.5035 0.97 4188 220 0.2519 0.2800 REMARK 3 17 2.5035 - 2.4534 0.97 4171 203 0.2514 0.3288 REMARK 3 18 2.4534 - 2.4071 0.98 4153 239 0.2486 0.2733 REMARK 3 19 2.4071 - 2.3641 0.99 4181 236 0.2551 0.3382 REMARK 3 20 2.3641 - 2.3240 0.98 4200 253 0.2555 0.2907 REMARK 3 21 2.3240 - 2.2865 0.98 4136 225 0.2650 0.3508 REMARK 3 22 2.2865 - 2.2514 0.99 4256 187 0.2699 0.2849 REMARK 3 23 2.2514 - 2.2183 0.97 4196 228 0.2872 0.3432 REMARK 3 24 2.2183 - 2.1870 0.95 4008 241 0.2904 0.3379 REMARK 3 25 2.1870 - 2.1575 0.95 4050 216 0.2884 0.3561 REMARK 3 26 2.1575 - 2.1294 0.96 4036 226 0.2890 0.3517 REMARK 3 27 2.1294 - 2.1028 0.97 4075 208 0.3087 0.3414 REMARK 3 28 2.1028 - 2.0775 0.97 4192 268 0.3104 0.3462 REMARK 3 29 2.0775 - 2.0533 0.97 4136 187 0.3150 0.3682 REMARK 3 30 2.0533 - 2.0300 0.94 3982 214 0.3325 0.3707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7077 REMARK 3 ANGLE : 1.761 9858 REMARK 3 CHIRALITY : 0.059 1092 REMARK 3 PLANARITY : 0.006 1032 REMARK 3 DIHEDRAL : 22.242 4133 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN F AND ( RESID 0:10 OR RESID 76:164 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6767 -13.7707 -69.9716 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.2305 REMARK 3 T33: 0.4076 T12: -0.0214 REMARK 3 T13: 0.0916 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.5706 L22: 1.6320 REMARK 3 L33: 1.2959 L12: -0.3161 REMARK 3 L13: 0.1102 L23: -0.2408 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.1372 S13: -0.0425 REMARK 3 S21: -0.2623 S22: -0.0194 S23: -0.5783 REMARK 3 S31: 0.1037 S32: -0.0552 S33: -0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN F AND RESID 11:75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6995 3.4773 -69.1951 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.2802 REMARK 3 T33: 0.4291 T12: 0.0093 REMARK 3 T13: -0.0690 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.3546 L22: 0.8763 REMARK 3 L33: 0.3379 L12: -0.3610 REMARK 3 L13: 0.3458 L23: -0.3237 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: 0.0696 S13: 0.4164 REMARK 3 S21: -0.1764 S22: -0.0988 S23: 0.0835 REMARK 3 S31: -0.1938 S32: -0.1544 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN F AND RESID 165:229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2868 -14.5152 -44.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.3240 T22: 0.2580 REMARK 3 T33: 0.4475 T12: 0.0360 REMARK 3 T13: -0.0721 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.6258 L22: 0.3387 REMARK 3 L33: 0.7407 L12: -0.4592 REMARK 3 L13: 0.0512 L23: -0.0731 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: -0.1028 S13: 0.0380 REMARK 3 S21: 0.3498 S22: 0.0141 S23: -0.2615 REMARK 3 S31: -0.1454 S32: -0.0746 S33: -0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN F AND RESID 241:341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.7676 -18.8732 -63.9164 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.5133 REMARK 3 T33: 0.3155 T12: -0.0754 REMARK 3 T13: 0.0204 T23: -0.1196 REMARK 3 L TENSOR REMARK 3 L11: 1.3013 L22: 1.9269 REMARK 3 L33: 0.9174 L12: -0.0732 REMARK 3 L13: 0.1374 L23: -0.7029 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: -0.1996 S13: 0.2141 REMARK 3 S21: -0.3010 S22: 0.2597 S23: 0.2266 REMARK 3 S31: 0.2738 S32: -0.4832 S33: 0.2441 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 0:10 OR RESID 76:164 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.9196 -8.0869 3.3428 REMARK 3 T TENSOR REMARK 3 T11: 0.5812 T22: 0.4062 REMARK 3 T33: 0.3574 T12: 0.0519 REMARK 3 T13: -0.1125 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.7381 L22: 0.9631 REMARK 3 L33: 0.6243 L12: 0.2553 REMARK 3 L13: 0.1878 L23: 0.0400 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0296 S13: -0.0409 REMARK 3 S21: 0.3196 S22: 0.0196 S23: -0.2398 REMARK 3 S31: 0.1233 S32: 0.2121 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 11:75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.5502 8.8239 -14.5638 REMARK 3 T TENSOR REMARK 3 T11: 0.6345 T22: 0.4226 REMARK 3 T33: 0.3761 T12: -0.0217 REMARK 3 T13: -0.0034 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 0.3592 L22: 0.8075 REMARK 3 L33: 0.3161 L12: 0.1149 REMARK 3 L13: -0.3226 L23: -0.2481 REMARK 3 S TENSOR REMARK 3 S11: 0.2127 S12: -0.0241 S13: 0.0824 REMARK 3 S21: 0.0090 S22: -0.0952 S23: -0.1948 REMARK 3 S31: -0.2453 S32: 0.2243 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 165:229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.6950 -8.8540 -4.5626 REMARK 3 T TENSOR REMARK 3 T11: 0.5933 T22: 0.4008 REMARK 3 T33: 0.3357 T12: 0.0040 REMARK 3 T13: 0.0050 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6584 L22: 0.5546 REMARK 3 L33: 0.1871 L12: 0.1159 REMARK 3 L13: 0.1862 L23: -0.1334 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: 0.0038 S13: 0.1186 REMARK 3 S21: -0.0974 S22: 0.0118 S23: 0.1428 REMARK 3 S31: -0.0520 S32: -0.0859 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 241:341 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6825 -14.7843 -32.4419 REMARK 3 T TENSOR REMARK 3 T11: 0.4225 T22: 0.4190 REMARK 3 T33: 0.2867 T12: 0.1366 REMARK 3 T13: 0.0353 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.9228 L22: 0.9779 REMARK 3 L33: 1.5099 L12: 0.6046 REMARK 3 L13: -0.1831 L23: 0.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.0499 S12: 0.1859 S13: -0.1165 REMARK 3 S21: 0.0432 S22: -0.0957 S23: 0.0026 REMARK 3 S31: 0.1972 S32: 0.1361 S33: 0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN H AND ( RESID 860:874 OR RESID 900:900 ) ) REMARK 3 OR ( CHAIN G AND RESID 838:854 ) OR ( CHAIN F AND REMARK 3 RESID 901:903 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7831 -22.8690 -53.5842 REMARK 3 T TENSOR REMARK 3 T11: 0.1513 T22: 0.2873 REMARK 3 T33: 0.2858 T12: -0.0184 REMARK 3 T13: 0.0632 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.4896 L22: 0.7006 REMARK 3 L33: 0.3395 L12: 0.4873 REMARK 3 L13: -0.0338 L23: 0.2704 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.3325 S13: -0.3247 REMARK 3 S21: 0.0120 S22: -0.0961 S23: -0.0887 REMARK 3 S31: -0.0027 S32: -0.1375 S33: -0.0543 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN A AND RESID 901:902 ) OR ( CHAIN C AND ( REMARK 3 RESID 857:873 OR RESID 900:900 ) ) OR ( CHAIN B AND REMARK 3 RESID 838:854 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.6531 -20.5213 -23.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.5977 T22: 0.4442 REMARK 3 T33: 0.3160 T12: -0.0312 REMARK 3 T13: -0.0116 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.8121 L22: 0.2820 REMARK 3 L33: 0.0118 L12: 0.2022 REMARK 3 L13: 0.1562 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: -0.0214 S13: -0.0080 REMARK 3 S21: 0.0901 S22: -0.1359 S23: -0.1225 REMARK 3 S31: 0.0335 S32: -0.2178 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 109.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IR1 REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPD , PH 5.2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.51900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN F 342 REMARK 465 MET F 343 REMARK 465 GLU F 344 REMARK 465 ARG F 345 REMARK 465 GLN F 346 REMARK 465 LEU F 347 REMARK 465 VAL F 348 REMARK 465 LEU F 349 REMARK 465 GLY F 350 REMARK 465 LEU F 351 REMARK 465 GLN A 342 REMARK 465 MET A 343 REMARK 465 GLU A 344 REMARK 465 ARG A 345 REMARK 465 GLN A 346 REMARK 465 LEU A 347 REMARK 465 VAL A 348 REMARK 465 LEU A 349 REMARK 465 GLY A 350 REMARK 465 LEU A 351 REMARK 465 DT G 837 REMARK 465 DT H 856 REMARK 465 DC H 857 REMARK 465 DT H 858 REMARK 465 DA H 859 REMARK 465 DT B 837 REMARK 465 DT C 856 REMARK 465 DT C 874 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS F 64 CG CD CE NZ REMARK 470 LYS F 205 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 DG H 860 P OP1 OP2 REMARK 470 DC C 857 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' DC C 873 O5' TTP C 900 1.34 REMARK 500 OP2 DT C 863 O HOH C 1001 1.85 REMARK 500 O HOH A 1119 O HOH C 1019 1.93 REMARK 500 O HOH B 918 O HOH B 925 1.98 REMARK 500 OD2 ASP F 340 O HOH F 1001 1.99 REMARK 500 NE2 GLN F 227 O HOH F 1002 2.00 REMARK 500 O HOH A 1066 O HOH A 1119 2.01 REMARK 500 OE2 GLU A 231 O HOH A 1001 2.01 REMARK 500 O HOH H 1016 O HOH H 1024 2.02 REMARK 500 O HOH F 1084 O HOH F 1135 2.02 REMARK 500 O HOH A 1119 O HOH C 1010 2.04 REMARK 500 O HOH B 924 O HOH B 929 2.05 REMARK 500 O HOH F 1145 O HOH F 1167 2.06 REMARK 500 OP2 DG C 869 O HOH C 1002 2.07 REMARK 500 O HOH G 932 O HOH G 933 2.08 REMARK 500 OE1 GLU A 168 O HOH A 1002 2.12 REMARK 500 O HOH F 1022 O HOH H 1022 2.17 REMARK 500 O HOH F 1134 O HOH F 1161 2.17 REMARK 500 O HOH A 1060 O HOH A 1117 2.17 REMARK 500 O HOH G 933 O HOH H 1025 2.17 REMARK 500 N3 DG C 869 O HOH C 1003 2.18 REMARK 500 OP2 DA G 848 O HOH G 901 2.19 REMARK 500 O HOH F 1124 O HOH F 1169 2.19 REMARK 500 O4 DT B 847 O HOH B 901 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH F 1155 O HOH F 1168 2554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC H 873 P DC H 873 O5' 0.070 REMARK 500 DC H 873 C5' DC H 873 C4' 0.043 REMARK 500 DC H 873 C4' DC H 873 C3' 0.111 REMARK 500 DC H 873 C3' DC H 873 C2' -0.229 REMARK 500 DC H 873 O4' DC H 873 C1' 0.122 REMARK 500 DC H 873 O4' DC H 873 C4' -0.160 REMARK 500 DC H 873 O3' DC H 873 C3' 0.088 REMARK 500 DC H 873 C1' DC H 873 N1 -0.094 REMARK 500 DC H 873 C4 DC H 873 N4 0.102 REMARK 500 DC H 873 N1 DC H 873 C2 -0.076 REMARK 500 DC H 873 N1 DC H 873 C6 -0.037 REMARK 500 DC H 873 C5 DC H 873 C6 0.051 REMARK 500 DT B 847 O3' DT B 847 C3' -0.038 REMARK 500 DA C 867 O3' DA C 867 C3' -0.040 REMARK 500 DC C 873 P DC C 873 O5' 0.085 REMARK 500 DC C 873 C5' DC C 873 C4' 0.043 REMARK 500 DC C 873 C4' DC C 873 C3' 0.124 REMARK 500 DC C 873 C3' DC C 873 C2' -0.237 REMARK 500 DC C 873 O4' DC C 873 C1' 0.129 REMARK 500 DC C 873 O4' DC C 873 C4' -0.154 REMARK 500 DC C 873 O3' DC C 873 C3' 0.081 REMARK 500 DC C 873 C1' DC C 873 N1 -0.105 REMARK 500 DC C 873 C2 DC C 873 O2 -0.057 REMARK 500 DC C 873 C4 DC C 873 N4 0.120 REMARK 500 DC C 873 N1 DC C 873 C2 -0.067 REMARK 500 DC C 873 N1 DC C 873 C6 -0.037 REMARK 500 DC C 873 C5 DC C 873 C6 0.060 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 26 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 PRO F 341 C - N - CA ANGL. DEV. = -9.0 DEGREES REMARK 500 DG G 842 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC G 853 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG H 869 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC H 872 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC H 873 OP1 - P - OP2 ANGL. DEV. = -12.3 DEGREES REMARK 500 DC H 873 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC H 873 N3 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DC H 873 N3 - C4 - N4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG B 850 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 873 OP1 - P - OP2 ANGL. DEV. = -10.9 DEGREES REMARK 500 DC C 873 O4' - C1' - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DC C 873 N3 - C4 - C5 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS F 11 50.46 39.41 REMARK 500 ALA F 56 2.88 80.09 REMARK 500 SER F 101 -178.15 -179.06 REMARK 500 GLU F 133 -39.27 66.99 REMARK 500 LEU F 307 123.90 -38.02 REMARK 500 ALA A 56 -3.69 75.16 REMARK 500 GLU A 133 -50.51 67.58 REMARK 500 ASP A 230 90.06 -166.26 REMARK 500 LYS A 278 89.82 -153.95 REMARK 500 ASP A 340 -74.42 -73.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD1 31.2 REMARK 620 3 MET F 9 O 80.1 90.5 REMARK 620 4 ASP F 103 OD2 105.2 77.0 84.7 REMARK 620 5 DPO F 903 O2 157.1 170.5 88.7 93.5 REMARK 620 6 DPO F 903 O7 85.2 114.1 92.9 168.7 75.4 REMARK 620 7 DT H 874 OP1 100.2 84.6 169.2 84.9 94.6 97.8 REMARK 620 8 TTP H 900 O1A 107.8 95.7 172.0 91.8 84.4 89.2 12.0 REMARK 620 9 TTP H 900 O2B 159.7 167.6 89.0 90.6 2.9 78.3 93.8 83.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 ASP F 8 OD2 38.3 REMARK 620 3 ASP F 103 OD1 87.0 121.0 REMARK 620 4 GLU F 104 OE1 111.4 80.1 115.8 REMARK 620 5 HOH F1071 O 93.0 60.6 175.1 68.7 REMARK 620 6 DC H 873 O3' 141.7 142.0 92.0 103.5 85.0 REMARK 620 7 DC H 873 O3' 151.2 139.2 98.7 91.6 79.1 12.0 REMARK 620 8 DT H 874 OP1 86.0 97.4 98.5 141.5 76.6 56.2 65.3 REMARK 620 9 TTP H 900 O1A 75.4 90.7 94.4 149.0 80.9 66.5 76.1 11.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 MET A 9 O 95.2 REMARK 620 3 ASP A 103 OD2 80.3 89.0 REMARK 620 4 TTP C 900 O1A 96.1 168.4 90.0 REMARK 620 5 TTP C 900 O2B 175.1 88.6 96.6 80.0 REMARK 620 6 TTP C 900 O1G 108.7 95.3 169.6 83.9 74.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 ASP A 103 OD1 95.4 REMARK 620 3 GLU A 104 OE2 112.7 113.9 REMARK 620 4 TTP C 900 O1A 79.4 94.6 146.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DPO F 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP C 900 and DC REMARK 800 C 873 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide TTP H 900 and DC REMARK 800 H 873 DBREF 5YV3 F 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV3 A 2 351 UNP Q47155 DPO4_ECOLI 2 351 DBREF 5YV3 G 837 854 PDB 5YV3 5YV3 837 854 DBREF 5YV3 H 856 874 PDB 5YV3 5YV3 856 874 DBREF 5YV3 B 837 854 PDB 5YV3 5YV3 837 854 DBREF 5YV3 C 856 874 PDB 5YV3 5YV3 856 874 SEQADV 5YV3 GLY F 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV3 SER F 1 UNP Q47155 EXPRESSION TAG SEQADV 5YV3 GLY A 0 UNP Q47155 EXPRESSION TAG SEQADV 5YV3 SER A 1 UNP Q47155 EXPRESSION TAG SEQRES 1 F 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 F 352 LEU SEQRES 1 A 352 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 A 352 PHE ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 A 352 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 A 352 GLY VAL ILE SER THR ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 A 352 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 A 352 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 A 352 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 A 352 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 A 352 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 A 352 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 A 352 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 A 352 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 A 352 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 A 352 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 A 352 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 A 352 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 A 352 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 A 352 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 A 352 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 A 352 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 A 352 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 A 352 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 A 352 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 A 352 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 A 352 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 A 352 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 A 352 LEU LEU ASP PRO GLN MET GLU ARG GLN LEU VAL LEU GLY SEQRES 28 A 352 LEU SEQRES 1 G 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 G 18 DG DA DC DC DC SEQRES 1 H 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 H 19 DG DA DC DC DC DT SEQRES 1 B 18 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 B 18 DG DA DC DC DC SEQRES 1 C 19 DT DC DT DA DG DG DG DT DC DC DT DA DG SEQRES 2 C 19 DG DA DC DC DC DT HET MG F 901 1 HET MG F 902 1 HET DPO F 903 9 HET MG A 901 1 HET MG A 902 1 HET TTP H 900 29 HET TTP C 900 29 HETNAM MG MAGNESIUM ION HETNAM DPO DIPHOSPHATE HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE FORMUL 7 MG 4(MG 2+) FORMUL 9 DPO O7 P2 4- FORMUL 12 TTP 2(C10 H17 N2 O14 P3) FORMUL 14 HOH *415(H2 O) HELIX 1 AA1 CYS F 11 ASN F 21 1 11 HELIX 2 AA2 PRO F 22 ARG F 25 5 4 HELIX 3 AA3 ASN F 45 LYS F 50 1 6 HELIX 4 AA4 PRO F 58 CYS F 66 1 9 HELIX 5 AA5 ARG F 75 ARG F 92 1 18 HELIX 6 AA6 VAL F 113 GLY F 117 5 5 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASP F 154 1 10 HELIX 9 AA9 THR F 165 ALA F 167 5 3 HELIX 10 AB1 GLU F 168 THR F 175 1 8 HELIX 11 AB2 PRO F 177 ILE F 181 5 5 HELIX 12 AB3 GLY F 185 MET F 195 1 11 HELIX 13 AB4 THR F 199 LYS F 205 1 7 HELIX 14 AB5 ASP F 207 GLY F 216 1 10 HELIX 15 AB6 GLY F 216 SER F 226 1 11 HELIX 16 AB7 HIS F 255 LYS F 278 1 24 HELIX 17 AB8 ASN F 308 ARG F 324 1 17 HELIX 18 AB9 CYS A 11 ASN A 21 1 11 HELIX 19 AC1 PRO A 22 ARG A 25 5 4 HELIX 20 AC2 ASN A 45 LYS A 50 1 6 HELIX 21 AC3 PRO A 58 CYS A 66 1 9 HELIX 22 AC4 ARG A 75 THR A 94 1 20 HELIX 23 AC5 HIS A 114 GLY A 117 5 4 HELIX 24 AC6 SER A 118 GLN A 135 1 18 HELIX 25 AC7 VAL A 145 ASN A 156 1 12 HELIX 26 AC8 THR A 165 ALA A 167 5 3 HELIX 27 AC9 GLU A 168 THR A 175 1 8 HELIX 28 AD1 PRO A 177 ILE A 181 5 5 HELIX 29 AD2 GLY A 185 ALA A 194 1 10 HELIX 30 AD3 THR A 199 LYS A 205 1 7 HELIX 31 AD4 ASP A 207 GLY A 216 1 10 HELIX 32 AD5 GLY A 216 SER A 226 1 11 HELIX 33 AD6 HIS A 255 LYS A 278 1 24 HELIX 34 AD7 ASN A 308 ARG A 324 1 17 SHEET 1 AA1 5 ILE F 97 SER F 101 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O ALA F 143 N ILE F 4 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N GLY F 287 O HIS F 335 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O THR F 298 N LEU F 290 SHEET 1 AA4 5 ILE A 97 SER A 101 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O ALA A 143 N ILE A 4 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 3 ILE A 41 ALA A 44 0 SHEET 2 AA5 3 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 3 AA5 3 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N LYS A 291 O ARG A 330 SHEET 4 AA6 4 GLN A 297 VAL A 303 -1 O THR A 298 N LEU A 290 LINK O3'A DC H 873 PA ATTP H 900 1555 1555 1.75 LINK O3' DC C 873 PA TTP C 900 1555 1555 1.73 LINK OD1AASP F 8 MG MG F 901 1555 1555 2.24 LINK OD1BASP F 8 MG MG F 901 1555 1555 2.49 LINK OD1BASP F 8 MG MG F 902 1555 1555 2.70 LINK OD2AASP F 8 MG MG F 902 1555 1555 2.64 LINK O MET F 9 MG MG F 901 1555 1555 2.21 LINK OD2 ASP F 103 MG MG F 901 1555 1555 2.31 LINK OD1 ASP F 103 MG MG F 902 1555 1555 2.20 LINK OE1 GLU F 104 MG MG F 902 1555 1555 2.02 LINK MG MG F 901 O2 BDPO F 903 1555 1555 2.41 LINK MG MG F 901 O7 BDPO F 903 1555 1555 2.44 LINK MG MG F 901 OP1B DT H 874 1555 1555 2.38 LINK MG MG F 901 O1AATTP H 900 1555 1555 1.83 LINK MG MG F 901 O2BATTP H 900 1555 1555 2.17 LINK MG MG F 901 O1GATTP H 900 1555 1555 2.27 LINK MG MG F 902 O HOH F1071 1555 1555 2.89 LINK MG MG F 902 O3'A DC H 873 1555 1555 2.66 LINK MG MG F 902 O3'B DC H 873 1555 1555 2.51 LINK MG MG F 902 OP1B DT H 874 1555 1555 2.06 LINK MG MG F 902 O1AATTP H 900 1555 1555 2.60 LINK OD1 ASP A 8 MG MG A 901 1555 1555 2.44 LINK OD1 ASP A 8 MG MG A 902 1555 1555 2.42 LINK O MET A 9 MG MG A 901 1555 1555 2.28 LINK OD2 ASP A 103 MG MG A 901 1555 1555 2.28 LINK OD1 ASP A 103 MG MG A 902 1555 1555 2.20 LINK OE2 GLU A 104 MG MG A 902 1555 1555 1.97 LINK MG MG A 901 O1A TTP C 900 1555 1555 1.79 LINK MG MG A 901 O2B TTP C 900 1555 1555 2.00 LINK MG MG A 901 O1G TTP C 900 1555 1555 2.52 LINK MG MG A 902 O1A TTP C 900 1555 1555 2.54 CISPEP 1 LYS F 157 PRO F 158 0 -2.72 CISPEP 2 LYS A 157 PRO A 158 0 -4.34 SITE 1 AC1 7 ASP F 8 MET F 9 ASP F 103 MG F 902 SITE 2 AC1 7 DPO F 903 DT H 874 TTP H 900 SITE 1 AC2 8 ASP F 8 ASP F 103 GLU F 104 MG F 901 SITE 2 AC2 8 HOH F1071 DC H 873 DT H 874 TTP H 900 SITE 1 AC3 14 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC3 14 PHE F 12 THR F 43 ARG F 49 ASP F 103 SITE 3 AC3 14 LYS F 157 MG F 901 HOH F1017 HOH F1022 SITE 4 AC3 14 DT H 874 TTP H 900 SITE 1 AC4 5 ASP A 8 MET A 9 ASP A 103 MG A 902 SITE 2 AC4 5 TTP C 900 SITE 1 AC5 6 ASP A 8 ASP A 103 GLU A 104 MG A 901 SITE 2 AC5 6 DC C 873 TTP C 900 SITE 1 AC6 22 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC6 22 PHE A 12 PHE A 13 SER A 42 THR A 43 SITE 3 AC6 22 ARG A 49 ASP A 103 GLU A 104 LYS A 150 SITE 4 AC6 22 LYS A 157 MG A 901 MG A 902 DA B 840 SITE 5 AC6 22 DG B 841 DG B 842 DC C 872 HOH C1008 SITE 6 AC6 22 HOH C1017 HOH C1025 SITE 1 AC7 30 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC7 30 PHE F 12 PHE F 13 SER F 42 THR F 43 SITE 3 AC7 30 ARG F 49 SER F 101 ASP F 103 GLU F 104 SITE 4 AC7 30 LYS F 150 LYS F 157 MG F 901 MG F 902 SITE 5 AC7 30 DPO F 903 HOH F1017 HOH F1022 HOH F1024 SITE 6 AC7 30 DA G 840 DG G 841 DG G 842 DC H 872 SITE 7 AC7 30 DT H 874 HOH H1002 HOH H1013 HOH H1014 SITE 8 AC7 30 HOH H1018 HOH H1021 CRYST1 86.249 57.038 109.950 90.00 94.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011594 0.000000 0.000922 0.00000 SCALE2 0.000000 0.017532 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009124 0.00000