HEADER TRANSFERASE 24-NOV-17 5YVB TITLE STRUCTURE OF CAMKK2 IN COMPLEX WITH CKI-011 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAMKK 2,CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE COMPND 5 BETA,CAMKK BETA; COMPND 6 EC: 2.7.11.17; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAMKK2, CAMKKB, KIAA0787; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32644; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PX070406-05 KEYWDS ATP-BINDING, KINASE, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 2 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.NIWA,N.HANDA,S.YOKOYAMA REVDAT 6 22-NOV-23 5YVB 1 REMARK REVDAT 5 10-JUN-20 5YVB 1 TITLE REVDAT 4 20-MAY-20 5YVB 1 JRNL REVDAT 3 16-OCT-19 5YVB 1 REMARK REVDAT 2 19-JUN-19 5YVB 1 TITLE REVDAT 1 05-DEC-18 5YVB 0 JRNL AUTH D.TAKAYA,H.NIWA,J.MIKUNI,K.NAKAMURA,N.HANDA,A.TANAKA, JRNL AUTH 2 S.YOKOYAMA,T.HONMA JRNL TITL PROTEIN LIGAND INTERACTION ANALYSIS AGAINST NEW CAMKK2 JRNL TITL 2 INHIBITORS BY USE OF X-RAY CRYSTALLOGRAPHY AND THE FRAGMENT JRNL TITL 3 MOLECULAR ORBITAL (FMO) METHOD. JRNL REF J.MOL.GRAPH.MODEL. V. 99 07599 2020 JRNL REFN ISSN 1093-3263 JRNL PMID 32348940 JRNL DOI 10.1016/J.JMGM.2020.107599 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7806 - 5.4750 1.00 2637 141 0.1669 0.1950 REMARK 3 2 5.4750 - 4.3476 1.00 2675 114 0.1345 0.1902 REMARK 3 3 4.3476 - 3.7985 1.00 2630 147 0.1288 0.1701 REMARK 3 4 3.7985 - 3.4515 1.00 2658 139 0.1414 0.1722 REMARK 3 5 3.4515 - 3.2042 1.00 2616 151 0.1671 0.2341 REMARK 3 6 3.2042 - 3.0154 1.00 2638 131 0.1683 0.2115 REMARK 3 7 3.0154 - 2.8644 1.00 2645 171 0.1792 0.2046 REMARK 3 8 2.8644 - 2.7398 1.00 2670 119 0.1839 0.2978 REMARK 3 9 2.7398 - 2.6343 1.00 2621 128 0.1818 0.2481 REMARK 3 10 2.6343 - 2.5434 1.00 2644 157 0.1857 0.2259 REMARK 3 11 2.5434 - 2.4639 1.00 2648 142 0.1860 0.2425 REMARK 3 12 2.4639 - 2.3935 1.00 2647 134 0.1922 0.2252 REMARK 3 13 2.3935 - 2.3305 1.00 2640 121 0.1993 0.2492 REMARK 3 14 2.3305 - 2.2736 1.00 2641 156 0.2029 0.2716 REMARK 3 15 2.2736 - 2.2220 1.00 2589 147 0.2196 0.2594 REMARK 3 16 2.2220 - 2.1747 1.00 2667 138 0.2315 0.3149 REMARK 3 17 2.1747 - 2.1312 1.00 2664 151 0.2318 0.2582 REMARK 3 18 2.1312 - 2.0910 1.00 2651 136 0.2425 0.2581 REMARK 3 19 2.0910 - 2.0536 1.00 2615 148 0.2467 0.2967 REMARK 3 20 2.0536 - 2.0188 0.88 2309 153 0.2721 0.2484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2189 REMARK 3 ANGLE : 0.837 2953 REMARK 3 CHIRALITY : 0.057 324 REMARK 3 PLANARITY : 0.005 373 REMARK 3 DIHEDRAL : 14.015 1324 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7337 -9.1532 -34.6232 REMARK 3 T TENSOR REMARK 3 T11: 0.7644 T22: 0.4133 REMARK 3 T33: 0.2615 T12: 0.0380 REMARK 3 T13: 0.0339 T23: 0.0166 REMARK 3 L TENSOR REMARK 3 L11: 6.8680 L22: 6.6663 REMARK 3 L33: 2.7695 L12: 2.1758 REMARK 3 L13: -0.1300 L23: 1.8181 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.6547 S13: 0.0164 REMARK 3 S21: -1.1646 S22: 0.0894 S23: -0.5521 REMARK 3 S31: 0.9517 S32: 0.1567 S33: -0.0405 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1588 -14.4973 -17.7250 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.2284 REMARK 3 T33: 0.2142 T12: -0.0337 REMARK 3 T13: -0.0283 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.3436 L22: 3.6389 REMARK 3 L33: 2.6168 L12: -0.1229 REMARK 3 L13: 0.5216 L23: -0.9867 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: 0.1978 S13: 0.0680 REMARK 3 S21: -0.5991 S22: 0.0567 S23: 0.0670 REMARK 3 S31: -0.0036 S32: 0.1248 S33: -0.0957 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1400 -15.0302 -1.0352 REMARK 3 T TENSOR REMARK 3 T11: 0.2497 T22: 0.2870 REMARK 3 T33: 0.1809 T12: -0.0317 REMARK 3 T13: -0.0196 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 5.3517 L22: 2.3958 REMARK 3 L33: 2.6625 L12: -0.5555 REMARK 3 L13: -0.1453 L23: -0.1635 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.5523 S13: 0.3965 REMARK 3 S21: 0.2846 S22: 0.0248 S23: -0.0482 REMARK 3 S31: -0.2031 S32: 0.2380 S33: -0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.11400 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ZV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM COCODYLATE PH 6.5, 0.2M REMARK 280 AMMONIUM ACETATE, 32% PEG 8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.38850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.23900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.77350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.23900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.38850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.77350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 151 REMARK 465 SER A 152 REMARK 465 SER A 153 REMARK 465 GLY A 154 REMARK 465 SER A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 ASP A 158 REMARK 465 CYS A 159 REMARK 465 LYS A 200 REMARK 465 LEU A 201 REMARK 465 ILE A 202 REMARK 465 ARG A 203 REMARK 465 GLN A 204 REMARK 465 ALA A 205 REMARK 465 GLY A 206 REMARK 465 PHE A 207 REMARK 465 PRO A 208 REMARK 465 ARG A 209 REMARK 465 ARG A 210 REMARK 465 PRO A 211 REMARK 465 PRO A 212 REMARK 465 PRO A 213 REMARK 465 ARG A 214 REMARK 465 GLY A 215 REMARK 465 THR A 216 REMARK 465 ARG A 217 REMARK 465 PRO A 218 REMARK 465 ALA A 219 REMARK 465 PRO A 220 REMARK 465 GLY A 221 REMARK 465 GLY A 222 REMARK 465 CYS A 223 REMARK 465 ILE A 224 REMARK 465 GLN A 225 REMARK 465 PRO A 226 REMARK 465 ARG A 227 REMARK 465 GLY A 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 234 OD2 ASP A 256 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 163 -123.70 60.91 REMARK 500 LYS A 168 -151.22 -111.54 REMARK 500 TYR A 176 -36.28 88.32 REMARK 500 ASP A 312 44.94 -143.83 REMARK 500 ASP A 330 86.05 70.11 REMARK 500 PHE A 331 30.35 -99.60 REMARK 500 SER A 345 -8.13 -140.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 812 DISTANCE = 5.96 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 92C A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 507 DBREF 5YVB A 158 448 UNP Q96RR4 KKCC2_HUMAN 158 448 SEQADV 5YVB GLY A 151 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB SER A 152 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB SER A 153 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB GLY A 154 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB SER A 155 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB SER A 156 UNP Q96RR4 EXPRESSION TAG SEQADV 5YVB GLY A 157 UNP Q96RR4 EXPRESSION TAG SEQRES 1 A 298 GLY SER SER GLY SER SER GLY ASP CYS VAL GLN LEU ASN SEQRES 2 A 298 GLN TYR THR LEU LYS ASP GLU ILE GLY LYS GLY SER TYR SEQRES 3 A 298 GLY VAL VAL LYS LEU ALA TYR ASN GLU ASN ASP ASN THR SEQRES 4 A 298 TYR TYR ALA MET LYS VAL LEU SER LYS LYS LYS LEU ILE SEQRES 5 A 298 ARG GLN ALA GLY PHE PRO ARG ARG PRO PRO PRO ARG GLY SEQRES 6 A 298 THR ARG PRO ALA PRO GLY GLY CYS ILE GLN PRO ARG GLY SEQRES 7 A 298 PRO ILE GLU GLN VAL TYR GLN GLU ILE ALA ILE LEU LYS SEQRES 8 A 298 LYS LEU ASP HIS PRO ASN VAL VAL LYS LEU VAL GLU VAL SEQRES 9 A 298 LEU ASP ASP PRO ASN GLU ASP HIS LEU TYR MET VAL PHE SEQRES 10 A 298 GLU LEU VAL ASN GLN GLY PRO VAL MET GLU VAL PRO THR SEQRES 11 A 298 LEU LYS PRO LEU SER GLU ASP GLN ALA ARG PHE TYR PHE SEQRES 12 A 298 GLN ASP LEU ILE LYS GLY ILE GLU TYR LEU HIS TYR GLN SEQRES 13 A 298 LYS ILE ILE HIS ARG ASP ILE LYS PRO SER ASN LEU LEU SEQRES 14 A 298 VAL GLY GLU ASP GLY HIS ILE LYS ILE ALA ASP PHE GLY SEQRES 15 A 298 VAL SER ASN GLU PHE LYS GLY SER ASP ALA LEU LEU SER SEQRES 16 A 298 ASN THR VAL GLY THR PRO ALA PHE MET ALA PRO GLU SER SEQRES 17 A 298 LEU SER GLU THR ARG LYS ILE PHE SER GLY LYS ALA LEU SEQRES 18 A 298 ASP VAL TRP ALA MET GLY VAL THR LEU TYR CYS PHE VAL SEQRES 19 A 298 PHE GLY GLN CYS PRO PHE MET ASP GLU ARG ILE MET CAS SEQRES 20 A 298 LEU HIS SER LYS ILE LYS SER GLN ALA LEU GLU PHE PRO SEQRES 21 A 298 ASP GLN PRO ASP ILE ALA GLU ASP LEU LYS ASP LEU ILE SEQRES 22 A 298 THR ARG MET LEU ASP LYS ASN PRO GLU SER ARG ILE VAL SEQRES 23 A 298 VAL PRO GLU ILE LYS LEU HIS PRO TRP VAL THR ARG MODRES 5YVB CAS A 397 CYS MODIFIED RESIDUE HET CAS A 397 9 HET 92C A 501 18 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET PGE A 506 10 HET CL A 507 1 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM 92C (3Z)-5-CHLORO-3-[(1-METHYL-1H-PYRAZOL-4-YL) HETNAM 2 92C METHYLIDENE]-1,3-DIHYDRO-2H-INDOL-2-ONE HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CAS C5 H12 AS N O2 S FORMUL 2 92C C13 H10 CL N3 O FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 PGE C6 H14 O4 FORMUL 8 CL CL 1- FORMUL 9 HOH *212(H2 O) HELIX 1 AA1 ILE A 230 LYS A 242 1 13 HELIX 2 AA2 SER A 285 GLN A 306 1 22 HELIX 3 AA3 LYS A 314 SER A 316 5 3 HELIX 4 AA4 THR A 350 MET A 354 5 5 HELIX 5 AA5 ALA A 355 SER A 360 5 6 HELIX 6 AA6 GLY A 368 GLY A 386 1 19 HELIX 7 AA7 ARG A 394 GLN A 405 1 12 HELIX 8 AA8 ALA A 416 LEU A 427 1 12 HELIX 9 AA9 VAL A 436 LYS A 441 1 6 HELIX 10 AB1 HIS A 443 ARG A 448 1 6 SHEET 1 AA1 6 GLN A 161 LEU A 162 0 SHEET 2 AA1 6 TYR A 165 LYS A 173 -1 O TYR A 165 N LEU A 162 SHEET 3 AA1 6 VAL A 178 ASN A 184 -1 O VAL A 179 N ILE A 171 SHEET 4 AA1 6 THR A 189 SER A 197 -1 O MET A 193 N LYS A 180 SHEET 5 AA1 6 HIS A 262 GLU A 268 -1 O PHE A 267 N ALA A 192 SHEET 6 AA1 6 LEU A 251 ASP A 256 -1 N LEU A 255 O TYR A 264 SHEET 1 AA2 2 ILE A 308 ILE A 309 0 SHEET 2 AA2 2 ASN A 335 GLU A 336 -1 O ASN A 335 N ILE A 309 SHEET 1 AA3 2 LEU A 318 VAL A 320 0 SHEET 2 AA3 2 ILE A 326 ILE A 328 -1 O LYS A 327 N LEU A 319 SHEET 1 AA4 2 LEU A 343 LEU A 344 0 SHEET 2 AA4 2 PHE A 366 SER A 367 -1 O PHE A 366 N LEU A 344 LINK C MET A 396 N CAS A 397 1555 1555 1.33 LINK C CAS A 397 N LEU A 398 1555 1555 1.33 CISPEP 1 VAL A 278 PRO A 279 0 -1.67 CISPEP 2 GLN A 412 PRO A 413 0 -5.23 SITE 1 AC1 11 ILE A 171 ALA A 192 PHE A 267 GLU A 268 SITE 2 AC1 11 LEU A 269 VAL A 270 ASN A 271 GLY A 273 SITE 3 AC1 11 LEU A 319 GOL A 502 HOH A 683 SITE 1 AC2 7 ASN A 271 PHE A 337 LYS A 338 ASP A 341 SITE 2 AC2 7 LEU A 343 92C A 501 HOH A 602 SITE 1 AC3 8 ARG A 394 GLU A 432 SER A 433 ARG A 434 SITE 2 AC3 8 ILE A 435 GLU A 439 HOH A 673 HOH A 734 SITE 1 AC4 1 TYR A 292 SITE 1 AC5 4 LYS A 282 PRO A 283 LEU A 284 GLN A 288 SITE 1 AC6 5 ARG A 394 ARG A 425 HOH A 606 HOH A 620 SITE 2 AC6 5 HOH A 638 SITE 1 AC7 3 PRO A 315 SER A 316 HOH A 704 CRYST1 66.777 77.547 84.478 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014975 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011837 0.00000