HEADER VIRAL PROTEIN 27-NOV-17 5YVQ TITLE COMPLEX OF MU PHAGE TAIL FIBER AND ITS CHAPERONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL FIBER PROTEIN S; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GENE PRODUCT 49,GP49,GENE PRODUCT S,GPS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TAIL FIBER ASSEMBLY PROTEIN U; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GENE PRODUCT 50,GP50,GENE PRODUCT U,GPU; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE MU; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE MU; SOURCE 4 ORGANISM_TAXID: 10677; SOURCE 5 GENE: S, MUP49; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE MU; SOURCE 13 ORGANISM_COMMON: BACTERIOPHAGE MU; SOURCE 14 ORGANISM_TAXID: 10677; SOURCE 15 GENE: U, MUP50; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET21A-LIC KEYWDS BACTERIOPHAGE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.TAKEDA,K.SAKAI,T.IWAZAKI,E.YAMASHITA,A.NAKAGAWA REVDAT 3 27-MAR-24 5YVQ 1 REMARK REVDAT 2 09-OCT-19 5YVQ 1 JRNL REVDAT 1 22-MAY-19 5YVQ 0 JRNL AUTH O.I.NORTH,K.SAKAI,E.YAMASHITA,A.NAKAGAWA,T.IWAZAKI, JRNL AUTH 2 C.R.BUTTNER,S.TAKEDA,A.R.DAVIDSON JRNL TITL PHAGE TAIL FIBRE ASSEMBLY PROTEINS EMPLOY A MODULAR JRNL TITL 2 STRUCTURE TO DRIVE THE CORRECT FOLDING OF DIVERSE FIBRES. JRNL REF NAT MICROBIOL V. 4 1645 2019 JRNL REFN ESSN 2058-5276 JRNL PMID 31209305 JRNL DOI 10.1038/S41564-019-0477-7 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 59229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.1436 - 5.7908 0.99 2962 166 0.3339 0.3017 REMARK 3 2 5.7908 - 4.6006 0.99 2782 144 0.2159 0.2497 REMARK 3 3 4.6006 - 4.0203 0.99 2764 139 0.1888 0.2107 REMARK 3 4 4.0203 - 3.6533 1.00 2728 108 0.2021 0.2156 REMARK 3 5 3.6533 - 3.3918 0.99 2714 112 0.1966 0.2679 REMARK 3 6 3.3918 - 3.1920 1.00 2685 133 0.2054 0.2672 REMARK 3 7 3.1920 - 3.0323 1.00 2661 149 0.2087 0.2330 REMARK 3 8 3.0323 - 2.9003 1.00 2677 154 0.1995 0.2403 REMARK 3 9 2.9003 - 2.7888 1.00 2668 149 0.2001 0.2470 REMARK 3 10 2.7888 - 2.6926 1.00 2708 129 0.2054 0.1978 REMARK 3 11 2.6926 - 2.6084 1.00 2650 136 0.2172 0.2307 REMARK 3 12 2.6084 - 2.5339 1.00 2630 147 0.2178 0.2692 REMARK 3 13 2.5339 - 2.4672 1.00 2630 143 0.2188 0.2684 REMARK 3 14 2.4672 - 2.4070 1.00 2691 115 0.2195 0.2784 REMARK 3 15 2.4070 - 2.3523 1.00 2624 139 0.2508 0.2909 REMARK 3 16 2.3523 - 2.3023 1.00 2607 139 0.2829 0.3211 REMARK 3 17 2.3023 - 2.2562 1.00 2660 151 0.3229 0.3483 REMARK 3 18 2.2562 - 2.2137 1.00 2605 122 0.3691 0.3616 REMARK 3 19 2.2137 - 2.1742 1.00 2669 159 0.3204 0.3734 REMARK 3 20 2.1742 - 2.1373 0.99 2514 167 0.2888 0.2846 REMARK 3 21 2.1373 - 2.1028 0.98 2635 164 0.2891 0.3342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3755 REMARK 3 ANGLE : 0.843 5077 REMARK 3 CHIRALITY : 0.058 536 REMARK 3 PLANARITY : 0.005 666 REMARK 3 DIHEDRAL : 2.955 3049 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 37.7485 18.5873 208.2416 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.1058 REMARK 3 T33: 0.1445 T12: 0.0167 REMARK 3 T13: -0.0162 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.1494 L22: 0.1732 REMARK 3 L33: 1.4676 L12: 0.0104 REMARK 3 L13: -0.1086 L23: 0.1027 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: -0.0204 S13: -0.0062 REMARK 3 S21: 0.0332 S22: -0.0281 S23: -0.0269 REMARK 3 S31: 0.0641 S32: 0.2191 S33: -0.0040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300005707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: (NH4)2SO4, 2-METHYL-2,4-PENTANEDIOL, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 66.33200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 33.16600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 57.44520 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 787 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 TYR A 3 REMARK 465 ILE A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 MET A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 ARG A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 ILE A 23 REMARK 465 VAL A 24 REMARK 465 ARG A 25 REMARK 465 TRP A 26 REMARK 465 PHE A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 GLY A 30 REMARK 465 ASP A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 ASN A 34 REMARK 465 VAL A 35 REMARK 465 ILE A 36 REMARK 465 THR A 37 REMARK 465 TRP A 38 REMARK 465 PRO A 39 REMARK 465 GLY A 40 REMARK 465 MET A 41 REMARK 465 ASP A 42 REMARK 465 TRP A 43 REMARK 465 PHE A 44 REMARK 465 ASN A 45 REMARK 465 ILE A 46 REMARK 465 VAL A 47 REMARK 465 GLN A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 LEU A 51 REMARK 465 LEU A 52 REMARK 465 ASN A 53 REMARK 465 THR A 54 REMARK 465 LEU A 55 REMARK 465 GLU A 56 REMARK 465 GLU A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 ILE A 60 REMARK 465 GLN A 61 REMARK 465 PRO A 62 REMARK 465 ASP A 63 REMARK 465 LYS A 64 REMARK 465 THR A 65 REMARK 465 LYS A 66 REMARK 465 LEU A 67 REMARK 465 ASN A 68 REMARK 465 GLN A 69 REMARK 465 LEU A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 SER A 73 REMARK 465 ILE A 74 REMARK 465 LYS A 75 REMARK 465 ALA A 76 REMARK 465 ILE A 77 REMARK 465 MET A 78 REMARK 465 SER A 79 REMARK 465 ASN A 80 REMARK 465 ASN A 81 REMARK 465 ALA A 82 REMARK 465 LEU A 83 REMARK 465 LEU A 84 REMARK 465 ILE A 85 REMARK 465 LYS A 86 REMARK 465 ASN A 87 REMARK 465 ASN A 88 REMARK 465 LEU A 89 REMARK 465 SER A 90 REMARK 465 GLU A 91 REMARK 465 ILE A 92 REMARK 465 LYS A 93 REMARK 465 THR A 94 REMARK 465 ALA A 95 REMARK 465 GLY A 96 REMARK 465 ALA A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 GLN A 100 REMARK 465 ARG A 101 REMARK 465 THR A 102 REMARK 465 ALA A 103 REMARK 465 ARG A 104 REMARK 465 GLU A 105 REMARK 465 ASN A 106 REMARK 465 LEU A 107 REMARK 465 ASP A 108 REMARK 465 ILE A 109 REMARK 465 TYR A 110 REMARK 465 ASP A 111 REMARK 465 ALA A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ASN A 115 REMARK 465 LYS A 116 REMARK 465 LYS A 117 REMARK 465 GLY A 118 REMARK 465 LEU A 119 REMARK 465 VAL A 120 REMARK 465 GLN A 121 REMARK 465 LEU A 122 REMARK 465 THR A 123 REMARK 465 SER A 124 REMARK 465 ALA A 125 REMARK 465 THR A 126 REMARK 465 ASP A 127 REMARK 465 SER A 128 REMARK 465 PRO A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 THR A 132 REMARK 465 LEU A 133 REMARK 465 ALA A 134 REMARK 465 ALA A 135 REMARK 465 THR A 136 REMARK 465 ALA A 137 REMARK 465 ASN A 473 REMARK 465 GLY A 474 REMARK 465 ASP A 475 REMARK 465 TRP A 476 REMARK 465 GLU A 477 REMARK 465 MET A 478 REMARK 465 GLN A 479 REMARK 465 GLY A 480 REMARK 465 GLY A 481 REMARK 465 ARG B 104 REMARK 465 ILE B 105 REMARK 465 TYR B 106 REMARK 465 THR B 107 REMARK 465 ALA B 108 REMARK 465 ASP B 109 REMARK 465 GLU B 110 REMARK 465 GLN B 111 REMARK 465 GLN B 112 REMARK 465 GLN B 113 REMARK 465 GLN B 114 REMARK 465 ALA B 115 REMARK 465 GLU B 116 REMARK 465 SER B 117 REMARK 465 GLN B 118 REMARK 465 LYS B 119 REMARK 465 ALA B 120 REMARK 465 ALA B 121 REMARK 465 LEU B 122 REMARK 465 LEU B 123 REMARK 465 SER B 124 REMARK 465 GLU B 125 REMARK 465 ALA B 126 REMARK 465 GLU B 127 REMARK 465 SER B 128 REMARK 465 VAL B 129 REMARK 465 ILE B 130 REMARK 465 GLN B 131 REMARK 465 PRO B 132 REMARK 465 LEU B 133 REMARK 465 GLU B 134 REMARK 465 ARG B 135 REMARK 465 ALA B 136 REMARK 465 VAL B 137 REMARK 465 ARG B 138 REMARK 465 LEU B 139 REMARK 465 ASN B 140 REMARK 465 MET B 141 REMARK 465 ALA B 142 REMARK 465 THR B 143 REMARK 465 ASP B 144 REMARK 465 GLU B 145 REMARK 465 GLU B 146 REMARK 465 ARG B 147 REMARK 465 ALA B 148 REMARK 465 ARG B 149 REMARK 465 LEU B 150 REMARK 465 GLU B 151 REMARK 465 SER B 152 REMARK 465 TRP B 153 REMARK 465 GLU B 154 REMARK 465 ARG B 155 REMARK 465 TYR B 156 REMARK 465 SER B 157 REMARK 465 VAL B 158 REMARK 465 LEU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ARG B 162 REMARK 465 VAL B 163 REMARK 465 ASP B 164 REMARK 465 THR B 165 REMARK 465 ALA B 166 REMARK 465 ASN B 167 REMARK 465 PRO B 168 REMARK 465 GLU B 169 REMARK 465 TRP B 170 REMARK 465 PRO B 171 REMARK 465 GLN B 172 REMARK 465 LYS B 173 REMARK 465 PRO B 174 REMARK 465 GLU B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 36 O HOH B 201 2.07 REMARK 500 O HOH A 1009 O HOH A 1018 2.12 REMARK 500 OH TYR A 312 O HOH A 701 2.13 REMARK 500 O HOH A 806 O HOH A 1032 2.17 REMARK 500 O HOH A 855 O HOH A 991 2.18 REMARK 500 O HOH A 1023 O HOH A 1049 2.18 REMARK 500 O HOH A 844 O HOH A 1047 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 258 O HOH A 708 5666 2.08 REMARK 500 O HOH A 888 O HOH A 1044 5566 2.13 REMARK 500 O HOH A 1011 O HOH A 1031 5666 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 198 -167.09 -126.86 REMARK 500 ASN A 217 107.25 -167.19 REMARK 500 SER A 246 -130.73 50.69 REMARK 500 VAL A 264 -162.04 -122.77 REMARK 500 ASN A 313 -158.12 -92.55 REMARK 500 ALA A 426 -134.07 -127.67 REMARK 500 LEU A 455 -136.43 -146.11 REMARK 500 LYS B 97 89.64 -158.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1087 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1088 DISTANCE = 6.02 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 DBREF 5YVQ A 1 504 UNP Q9T1V0 S1_BPMU 1 504 DBREF 5YVQ B 1 175 UNP Q9T1U9 U1_BPMU 1 175 SEQRES 1 A 504 MET PHE TYR ILE ASP ASN ASP SER GLY VAL THR VAL MET SEQRES 2 A 504 PRO PRO VAL SER ALA GLN ARG SER ALA ILE VAL ARG TRP SEQRES 3 A 504 PHE SER GLU GLY ASP GLY ASN ASN VAL ILE THR TRP PRO SEQRES 4 A 504 GLY MET ASP TRP PHE ASN ILE VAL GLN ALA GLU LEU LEU SEQRES 5 A 504 ASN THR LEU GLU GLU ALA GLY ILE GLN PRO ASP LYS THR SEQRES 6 A 504 LYS LEU ASN GLN LEU ALA LEU SER ILE LYS ALA ILE MET SEQRES 7 A 504 SER ASN ASN ALA LEU LEU ILE LYS ASN ASN LEU SER GLU SEQRES 8 A 504 ILE LYS THR ALA GLY ALA SER ALA GLN ARG THR ALA ARG SEQRES 9 A 504 GLU ASN LEU ASP ILE TYR ASP ALA SER LEU ASN LYS LYS SEQRES 10 A 504 GLY LEU VAL GLN LEU THR SER ALA THR ASP SER PRO SER SEQRES 11 A 504 GLU THR LEU ALA ALA THR ALA LYS ALA VAL LYS ILE ALA SEQRES 12 A 504 MET ASP ASN ALA ASN ALA ARG LEU ALA LYS ASP ARG ASN SEQRES 13 A 504 GLY ALA ASP ILE PRO ASN LYS PRO LEU PHE ILE GLN ASN SEQRES 14 A 504 LEU GLY LEU GLN GLU THR VAL ASN ARG ALA ARG ASN ALA SEQRES 15 A 504 VAL GLN LYS ASN GLY ASP THR LEU SER GLY GLY LEU THR SEQRES 16 A 504 PHE GLU ASN ASP SER ILE LEU ALA TRP ILE ARG ASN THR SEQRES 17 A 504 ASP TRP ALA LYS ILE GLY PHE LYS ASN ASP ALA ASP SER SEQRES 18 A 504 ASP THR ASP SER TYR MET TRP PHE GLU THR GLY ASP ASN SEQRES 19 A 504 GLY ASN GLU TYR PHE LYS TRP ARG SER LYS GLN SER THR SEQRES 20 A 504 THR THR LYS ASP LEU MET ASN LEU LYS TRP ASP ALA LEU SEQRES 21 A 504 SER VAL LEU VAL ASN ALA ILE VAL ASN GLY GLU VAL ILE SEQRES 22 A 504 SER LYS SER ALA ASN GLY LEU ARG ILE ALA TYR GLY ASN SEQRES 23 A 504 TYR GLY PHE PHE ILE ARG ASN ASP GLY SER ASN THR TYR SEQRES 24 A 504 PHE MET LEU THR ASN SER GLY ASP ASN MET GLY THR TYR SEQRES 25 A 504 ASN GLY LEU ARG PRO LEU TRP ILE ASN ASN ALA THR GLY SEQRES 26 A 504 ALA VAL SER MET GLY ARG GLY LEU ASN VAL SER GLY ASP SEQRES 27 A 504 THR LEU SER ASP ARG PHE ALA ILE ASN SER SER ASN GLY SEQRES 28 A 504 MET TRP ILE GLN MET ARG ASP ASN ASN ALA ILE PHE GLY SEQRES 29 A 504 LYS ASN ILE VAL ASN THR ASP SER ALA GLN ALA LEU LEU SEQRES 30 A 504 ARG GLN ASN HIS ALA ASP ARG LYS PHE MET ILE GLY GLY SEQRES 31 A 504 LEU GLY ASN LYS GLN PHE GLY ILE TYR MET ILE ASN ASN SEQRES 32 A 504 SER ARG THR ALA ASN GLY THR ASP GLY GLN ALA TYR MET SEQRES 33 A 504 ASP ASN ASN GLY ASN TRP LEU CYS GLY ALA GLN VAL ILE SEQRES 34 A 504 PRO GLY ASN TYR ALA ASN PHE ASP SER ARG TYR VAL ARG SEQRES 35 A 504 ASP VAL ARG LEU GLY THR GLN SER LEU THR GLY GLY LEU SEQRES 36 A 504 SER ARG ASP TYR LYS ALA PRO SER GLY HIS VAL ILE THR SEQRES 37 A 504 GLY PHE HIS THR ASN GLY ASP TRP GLU MET GLN GLY GLY SEQRES 38 A 504 ASP ASP LYS VAL TYR ILE ARG PRO VAL GLN LYS ASN ILE SEQRES 39 A 504 ASN GLY THR TRP TYR ASN VAL ALA SER ALA SEQRES 1 B 175 MET MET HIS LEU LYS ASN ILE LYS SER GLU ASN PRO LYS SEQRES 2 B 175 THR LYS GLU GLN TYR GLN LEU THR LYS ASN PHE ASP VAL SEQRES 3 B 175 ILE TRP LEU TRP SER GLU ASP GLY LYS ASN TRP TYR GLU SEQRES 4 B 175 GLU VAL ASN ASN PHE GLN ASP ASP THR ILE LYS ILE VAL SEQRES 5 B 175 TYR ASP GLU ASN ASN ILE ILE VAL ALA ILE THR LYS ASP SEQRES 6 B 175 ALA SER THR LEU ASN PRO GLU GLY PHE SER VAL VAL GLU SEQRES 7 B 175 ILE PRO ASP ILE THR ALA ASN ARG ARG ALA ASP ASP SER SEQRES 8 B 175 GLY LYS TRP MET PHE LYS ASP GLY ALA VAL VAL LYS ARG SEQRES 9 B 175 ILE TYR THR ALA ASP GLU GLN GLN GLN GLN ALA GLU SER SEQRES 10 B 175 GLN LYS ALA ALA LEU LEU SER GLU ALA GLU SER VAL ILE SEQRES 11 B 175 GLN PRO LEU GLU ARG ALA VAL ARG LEU ASN MET ALA THR SEQRES 12 B 175 ASP GLU GLU ARG ALA ARG LEU GLU SER TRP GLU ARG TYR SEQRES 13 B 175 SER VAL LEU VAL SER ARG VAL ASP THR ALA ASN PRO GLU SEQRES 14 B 175 TRP PRO GLN LYS PRO GLU HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *415(H2 O) HELIX 1 AA1 LYS A 138 ALA A 149 1 12 HELIX 2 AA2 ALA A 152 ASN A 156 5 5 HELIX 3 AA3 ASN A 162 GLY A 171 1 10 HELIX 4 AA4 LEU A 172 ASN A 181 1 10 HELIX 5 AA5 MET A 352 ASP A 358 5 7 HELIX 6 AA6 TYR A 433 SER A 438 1 6 HELIX 7 AA7 THR B 14 ASP B 25 1 12 HELIX 8 AA8 ASN B 36 VAL B 41 1 6 HELIX 9 AA9 ASN B 42 PHE B 44 5 3 HELIX 10 AB1 ASP B 65 LEU B 69 5 5 HELIX 11 AB2 ILE B 82 ARG B 87 1 6 SHEET 1 AA1 3 LEU A 202 ARG A 206 0 SHEET 2 AA1 3 ASP A 209 LYS A 216 -1 O ALA A 211 N TRP A 204 SHEET 3 AA1 3 TYR A 226 GLY A 232 -1 O GLU A 230 N LYS A 212 SHEET 1 AA2 3 PHE A 239 GLN A 245 0 SHEET 2 AA2 3 THR A 248 LYS A 256 -1 O LEU A 252 N TRP A 241 SHEET 3 AA2 3 ALA A 259 VAL A 262 -1 O SER A 261 N ASN A 254 SHEET 1 AA3 5 LEU A 280 ILE A 282 0 SHEET 2 AA3 5 PHE A 289 ASN A 293 -1 O PHE A 289 N ILE A 282 SHEET 3 AA3 5 ASN A 297 LEU A 302 -1 O MET A 301 N PHE A 290 SHEET 4 AA3 5 LEU A 318 ASN A 321 -1 O LEU A 318 N PHE A 300 SHEET 5 AA3 5 VAL A 327 SER A 328 -1 O SER A 328 N TRP A 319 SHEET 1 AA4 5 ALA A 373 ASN A 380 0 SHEET 2 AA4 5 ARG A 384 LEU A 391 -1 O ILE A 388 N LEU A 376 SHEET 3 AA4 5 GLN A 395 ASN A 402 -1 O GLY A 397 N GLY A 389 SHEET 4 AA4 5 GLY A 412 ASP A 417 -1 O MET A 416 N PHE A 396 SHEET 5 AA4 5 TRP A 422 CYS A 424 -1 O LEU A 423 N TYR A 415 SHEET 1 AA5 3 VAL A 441 LEU A 446 0 SHEET 2 AA5 3 LYS A 484 ILE A 494 -1 O GLN A 491 N ARG A 445 SHEET 3 AA5 3 HIS A 465 HIS A 471 -1 N HIS A 471 O LYS A 484 SHEET 1 AA6 3 SER A 450 LEU A 451 0 SHEET 2 AA6 3 LYS A 484 ILE A 494 -1 O ILE A 487 N SER A 450 SHEET 3 AA6 3 THR A 497 ASN A 500 -1 O TYR A 499 N LYS A 492 SHEET 1 AA7 4 HIS B 3 LEU B 4 0 SHEET 2 AA7 4 SER B 75 ILE B 79 -1 O VAL B 76 N LEU B 4 SHEET 3 AA7 4 ILE B 49 TYR B 53 -1 N ILE B 51 O VAL B 77 SHEET 4 AA7 4 ILE B 59 THR B 63 -1 O THR B 63 N LYS B 50 SHEET 1 AA8 2 LYS B 8 SER B 9 0 SHEET 2 AA8 2 LEU B 29 TRP B 30 -1 O TRP B 30 N LYS B 8 SHEET 1 AA9 2 TRP B 94 PHE B 96 0 SHEET 2 AA9 2 ALA B 100 VAL B 102 -1 O VAL B 101 N MET B 95 CISPEP 1 GLY A 232 ASP A 233 0 11.10 SITE 1 AC1 5 ARG A 292 ASP A 294 TYR A 299 ARG A 316 SITE 2 AC1 5 HOH A 722 SITE 1 AC2 3 LYS A 138 LYS A 141 HOH A 749 SITE 1 AC3 7 ARG A 343 ARG A 378 ASN A 380 HOH A 702 SITE 2 AC3 7 HOH A 734 HOH A1017 HOH A1021 SITE 1 AC4 4 GLY A 306 ASP A 307 ASN A 308 MET A 309 SITE 1 AC5 6 THR A 249 LYS A 250 ASP A 251 ASP A 371 SITE 2 AC5 6 LYS A 394 HOH A 834 CRYST1 66.332 66.332 387.769 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015076 0.008704 0.000000 0.00000 SCALE2 0.000000 0.017408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002579 0.00000