HEADER OXIDOREDUCTASE 27-NOV-17 5YVS TITLE CRYSTAL STRUCTURE OF THE ARCHAEAL HALO-THERMOPHILIC RED SEA BRINE POOL TITLE 2 ALCOHOL DEHYDROGENASE ADH/D1 BOUND TO NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATE DIVISON MSBL1 ARCHAEON SCGC- SOURCE 3 AAA259E19; SOURCE 4 ORGANISM_TAXID: 1698264; SOURCE 5 GENE: AKJ65_00115; SOURCE 6 EXPRESSION_SYSTEM: HALOFERAX VOLCANII; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2246; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: H1895; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTA963 KEYWDS PROTEIN-COFACTOR COMPLEX, DEHYDROGENASE, NADP, HALOPHILIC, KEYWDS 2 THERMOPHILIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.W.GROETZINGER,E.STRILLINGER,A.FRANK,J.EPPINGER,M.GROLL,S.T.AROLD REVDAT 4 27-MAR-24 5YVS 1 REMARK REVDAT 3 07-FEB-18 5YVS 1 AUTHOR JRNL REVDAT 2 31-JAN-18 5YVS 1 TITLE SOURCE JRNL REVDAT 1 27-DEC-17 5YVS 0 JRNL AUTH S.W.GROETZINGER,R.KARAN,E.STRILLINGER,S.BADER,A.FRANK, JRNL AUTH 2 I.S.AL ROWAIHI,A.AKAL,W.WACKEROW,J.A.ARCHER,M.RUEPING, JRNL AUTH 3 D.WEUSTER-BOTZ,M.GROLL,J.EPPINGER,S.T.AROLD JRNL TITL IDENTIFICATION AND EXPERIMENTAL CHARACTERIZATION OF AN JRNL TITL 2 EXTREMOPHILIC BRINE POOL ALCOHOL DEHYDROGENASE FROM SINGLE JRNL TITL 3 AMPLIFIED GENOMES JRNL REF ACS CHEM. BIOL. V. 13 161 2018 JRNL REFN ESSN 1554-8937 JRNL PMID 29188989 JRNL DOI 10.1021/ACSCHEMBIO.7B00792 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 16793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5931 - 5.2140 1.00 2763 139 0.1592 0.1738 REMARK 3 2 5.2140 - 4.1392 1.00 2745 147 0.1492 0.1878 REMARK 3 3 4.1392 - 3.6162 1.00 2744 143 0.1719 0.2139 REMARK 3 4 3.6162 - 3.2857 1.00 2749 143 0.2480 0.3260 REMARK 3 5 3.2857 - 3.0502 1.00 2759 145 0.2765 0.2905 REMARK 3 6 3.0502 - 2.8704 1.00 2742 144 0.2882 0.3175 REMARK 3 7 2.8704 - 2.7266 1.00 2748 145 0.3136 0.3188 REMARK 3 8 2.7266 - 2.6080 0.99 2718 139 0.3483 0.4065 REMARK 3 9 2.6080 - 2.5076 1.00 2754 147 0.3622 0.4165 REMARK 3 10 2.5076 - 2.4210 1.00 2751 142 0.3856 0.4011 REMARK 3 11 2.4210 - 2.3453 0.94 2596 136 0.4368 0.4081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3165 REMARK 3 ANGLE : 0.542 4300 REMARK 3 CHIRALITY : 0.042 490 REMARK 3 PLANARITY : 0.003 555 REMARK 3 DIHEDRAL : 17.525 1901 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.9041 16.5487 36.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.5364 T22: 0.5712 REMARK 3 T33: 0.7354 T12: 0.0546 REMARK 3 T13: 0.0299 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 0.8836 L22: 1.0230 REMARK 3 L33: 1.3634 L12: 0.2046 REMARK 3 L13: -1.1497 L23: -0.4327 REMARK 3 S TENSOR REMARK 3 S11: 0.1745 S12: 0.1151 S13: 0.1218 REMARK 3 S21: 0.0399 S22: -0.1319 S23: 0.1522 REMARK 3 S31: -0.0858 S32: 0.2278 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8967 27.3378 56.6065 REMARK 3 T TENSOR REMARK 3 T11: 0.8203 T22: 0.7260 REMARK 3 T33: 0.6958 T12: -0.1687 REMARK 3 T13: 0.0805 T23: -0.0969 REMARK 3 L TENSOR REMARK 3 L11: 0.5120 L22: 1.1678 REMARK 3 L33: 1.4394 L12: -0.3782 REMARK 3 L13: 0.2755 L23: 0.2807 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: -0.3133 S13: 0.2848 REMARK 3 S21: 0.5890 S22: -0.1496 S23: -0.0242 REMARK 3 S31: -0.4640 S32: 0.0150 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5073 27.9065 46.7069 REMARK 3 T TENSOR REMARK 3 T11: 0.7641 T22: 0.7244 REMARK 3 T33: 0.7676 T12: -0.0102 REMARK 3 T13: 0.0987 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.2632 L22: 0.3479 REMARK 3 L33: 1.0123 L12: 0.1477 REMARK 3 L13: -0.3322 L23: -0.1041 REMARK 3 S TENSOR REMARK 3 S11: 0.1896 S12: -0.2081 S13: 0.2713 REMARK 3 S21: 0.2081 S22: -0.1645 S23: 0.2681 REMARK 3 S31: -0.4764 S32: -0.3221 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8434 7.7918 46.5529 REMARK 3 T TENSOR REMARK 3 T11: 0.6252 T22: 0.5869 REMARK 3 T33: 0.6009 T12: -0.0845 REMARK 3 T13: 0.0610 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.5215 L22: 1.5321 REMARK 3 L33: 2.2109 L12: 0.1009 REMARK 3 L13: -0.4405 L23: 0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.1020 S13: -0.1424 REMARK 3 S21: 0.2382 S22: -0.0668 S23: 0.0748 REMARK 3 S31: 0.2156 S32: -0.1183 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0578 -7.9004 37.7672 REMARK 3 T TENSOR REMARK 3 T11: 1.0491 T22: 0.7342 REMARK 3 T33: 0.8930 T12: -0.1973 REMARK 3 T13: 0.0667 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.4518 L22: 0.6948 REMARK 3 L33: 0.4513 L12: -0.0436 REMARK 3 L13: -0.4808 L23: -0.0350 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.1324 S13: -0.5332 REMARK 3 S21: -0.0303 S22: 0.0309 S23: 0.2578 REMARK 3 S31: 0.9849 S32: -0.2703 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 349 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.0006 5.7711 49.9006 REMARK 3 T TENSOR REMARK 3 T11: 0.8075 T22: 1.0032 REMARK 3 T33: 0.7896 T12: -0.2386 REMARK 3 T13: 0.1793 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.1879 L22: 0.6842 REMARK 3 L33: 0.6276 L12: -0.3095 REMARK 3 L13: -0.0656 L23: 0.3772 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.2536 S13: -0.0716 REMARK 3 S21: 0.3079 S22: -0.2535 S23: 0.2310 REMARK 3 S31: 0.5557 S32: -0.6351 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-17. REMARK 100 THE DEPOSITION ID IS D_1300005921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.345 REMARK 200 RESOLUTION RANGE LOW (A) : 48.583 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150MM MG ACETATE, 27% METHYL-PENTANE REMARK 280 -DIOL, 100MM NA CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.68000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.68000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.42000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.42000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.68000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.42000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.68000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.96000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.42000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.92000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.68000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -42.53 -143.89 REMARK 500 ASN A 71 75.42 66.99 REMARK 500 ALA A 115 -141.97 -73.59 REMARK 500 ARG A 118 -170.43 109.67 REMARK 500 ASP A 119 7.43 150.00 REMARK 500 GLU A 128 92.96 -167.48 REMARK 500 ASN A 175 -158.58 -156.39 REMARK 500 HIS A 219 61.53 -152.56 REMARK 500 SER A 267 -132.80 -98.32 REMARK 500 THR A 270 -140.16 -127.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 204 OD1 REMARK 620 2 HIS A 208 NE2 87.0 REMARK 620 3 HIS A 273 NE2 114.0 88.1 REMARK 620 4 HIS A 288 NE2 102.3 169.5 92.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YVM RELATED DB: PDB REMARK 900 5YVM CONTAINS SAME PROTEIN WITH DIFFERENT COFACTOR REMARK 900 RELATED ID: 5YVR RELATED DB: PDB REMARK 900 5YVR CONTAINS SAME PROTEIN WITH A SINGLE POINT MUTATION DBREF1 5YVS A 1 400 UNP A0A133UP32_9EURY DBREF2 5YVS A A0A133UP32 1 400 SEQADV 5YVS MET A -8 UNP A0A133UP3 INITIATING METHIONINE SEQADV 5YVS HIS A -7 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS HIS A -6 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS HIS A -5 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS HIS A -4 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS HIS A -3 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS HIS A -2 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS MET A -1 UNP A0A133UP3 EXPRESSION TAG SEQADV 5YVS ARG A 0 UNP A0A133UP3 EXPRESSION TAG SEQRES 1 A 409 MET HIS HIS HIS HIS HIS HIS MET ARG MET GLU PHE ARG SEQRES 2 A 409 HIS ASN LEU PRO SER SER ASP ILE ILE PHE GLY SER GLY SEQRES 3 A 409 THR LEU GLU LYS ILE GLY GLU GLU THR LYS LYS TRP GLY SEQRES 4 A 409 ASP LYS ALA ILE LEU VAL THR GLY LYS SER ASN MET LYS SEQRES 5 A 409 LYS LEU GLY PHE LEU ALA ASP ALA ILE ASP TYR LEU GLU SEQRES 6 A 409 SER ALA GLY VAL GLU THR VAL HIS TYR GLY GLU ILE GLU SEQRES 7 A 409 PRO ASN PRO THR THR THR VAL VAL ASP GLU GLY ALA GLU SEQRES 8 A 409 ILE VAL LEU GLU GLU GLY CYS ASP VAL VAL VAL ALA LEU SEQRES 9 A 409 GLY GLY GLY SER SER MET ASP ALA ALA LYS GLY ILE ALA SEQRES 10 A 409 MET VAL ALA GLY HIS SER ALA GLU GLU ARG ASP ILE SER SEQRES 11 A 409 VAL TRP ASP PHE ALA PRO GLU GLY ASP LYS GLU THR LYS SEQRES 12 A 409 PRO ILE THR GLU LYS THR LEU PRO VAL ILE ALA ALA THR SEQRES 13 A 409 SER THR SER GLY THR GLY SER HIS VAL THR PRO TYR ALA SEQRES 14 A 409 VAL ILE THR ASN PRO GLU THR LYS GLY LYS PRO GLY PHE SEQRES 15 A 409 GLY ASN LYS HIS SER PHE PRO LYS VAL SER ILE VAL ASP SEQRES 16 A 409 ILE ASP ILE LEU LYS GLU MET PRO PRO ARG LEU THR ALA SEQRES 17 A 409 ILE THR GLY TYR ASP VAL PHE SER HIS VAL SER GLU ASN SEQRES 18 A 409 LEU THR ALA LYS GLY ASP HIS PRO THR ALA ASP PRO LEU SEQRES 19 A 409 ALA ILE ARG ALA ILE GLU TYR VAL THR GLU TYR LEU LEU SEQRES 20 A 409 ARG ALA VAL GLU ASP GLY GLU ASP ILE LYS ALA ARG GLU SEQRES 21 A 409 LYS MET ALA VAL ALA ASP THR TYR ALA GLY LEU SER ASN SEQRES 22 A 409 THR ILE SER GLY THR THR LEU ARG HIS ALA MET ALA HIS SEQRES 23 A 409 PRO ILE SER GLY TYR TYR PRO ASP ILE SER HIS GLY GLN SEQRES 24 A 409 ALA LEU ALA SER ILE SER VAL PRO ILE MET GLU HIS ASN SEQRES 25 A 409 ILE GLU ASN GLY ASP GLU LYS THR TRP GLU ARG TYR SER SEQRES 26 A 409 ARG ILE ALA VAL ALA LEU ASP ALA SER LYS PRO VAL ASP SEQRES 27 A 409 ASN THR ARG GLN ALA ALA SER LYS ALA VAL ASP GLY LEU SEQRES 28 A 409 LYS ASN LEU LEU ARG SER LEU ASP LEU ASP LYS PRO LEU SEQRES 29 A 409 SER GLU LEU GLY VAL GLU GLU GLU LYS ILE PRO GLU MET SEQRES 30 A 409 THR GLU GLY ALA PHE ILE TYR MET GLY GLY GLY ILE GLU SEQRES 31 A 409 ALA ASN PRO VAL ASP VAL SER LYS GLU ASP VAL LYS GLU SEQRES 32 A 409 ILE PHE ARG LYS SER LEU HET MN A 501 1 HET NDP A 502 74 HETNAM MN MANGANESE (II) ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 MN MN 2+ FORMUL 3 NDP C21 H30 N7 O17 P3 FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 GLY A 17 GLU A 20 5 4 HELIX 2 AA2 LYS A 21 LYS A 28 1 8 HELIX 3 AA3 SER A 40 LEU A 45 1 6 HELIX 4 AA4 GLY A 46 GLY A 59 1 14 HELIX 5 AA5 THR A 73 GLY A 88 1 16 HELIX 6 AA6 GLY A 97 SER A 114 1 18 HELIX 7 AA7 SER A 121 ALA A 126 5 6 HELIX 8 AA8 GLY A 153 THR A 157 5 5 HELIX 9 AA9 ASN A 175 PHE A 179 5 5 HELIX 10 AB1 ILE A 187 LYS A 191 1 5 HELIX 11 AB2 PRO A 194 ALA A 215 1 22 HELIX 12 AB3 ALA A 222 ASP A 243 1 22 HELIX 13 AB4 ASP A 246 SER A 267 1 22 HELIX 14 AB5 THR A 270 TYR A 283 1 14 HELIX 15 AB6 SER A 287 ASN A 306 1 20 HELIX 16 AB7 ASP A 308 LEU A 322 1 15 HELIX 17 AB8 THR A 331 LEU A 349 1 19 HELIX 18 AB9 PRO A 354 GLY A 359 5 6 HELIX 19 AC1 GLU A 361 GLU A 363 5 3 HELIX 20 AC2 LYS A 364 MET A 376 1 13 HELIX 21 AC3 MET A 376 ASN A 383 1 8 HELIX 22 AC4 SER A 388 LEU A 400 1 13 SHEET 1 AA1 6 ILE A 12 GLY A 15 0 SHEET 2 AA1 6 VAL A 182 ASP A 186 1 O SER A 183 N ILE A 13 SHEET 3 AA1 6 VAL A 143 THR A 147 1 N ALA A 145 O ILE A 184 SHEET 4 AA1 6 VAL A 91 GLY A 96 1 N ALA A 94 O ILE A 144 SHEET 5 AA1 6 LYS A 32 VAL A 36 1 N VAL A 36 O VAL A 93 SHEET 6 AA1 6 GLU A 61 TYR A 65 1 O TYR A 65 N LEU A 35 SHEET 1 AA2 2 ALA A 160 VAL A 161 0 SHEET 2 AA2 2 GLY A 172 PHE A 173 -1 O PHE A 173 N ALA A 160 LINK OD1 ASP A 204 MN MN A 501 1555 1555 2.13 LINK NE2 HIS A 208 MN MN A 501 1555 1555 2.49 LINK NE2 HIS A 273 MN MN A 501 1555 1555 2.22 LINK NE2 HIS A 288 MN MN A 501 1555 1555 2.15 SITE 1 AC1 5 ASP A 204 HIS A 208 HIS A 273 HIS A 288 SITE 2 AC1 5 NDP A 502 SITE 1 AC2 27 GLY A 38 LYS A 39 SER A 40 ASN A 41 SITE 2 AC2 27 LEU A 45 ASN A 71 GLY A 97 GLY A 98 SITE 3 AC2 27 SER A 99 ASP A 102 SER A 148 THR A 149 SITE 4 AC2 27 THR A 152 SER A 154 THR A 157 TYR A 159 SITE 5 AC2 27 LYS A 170 ILE A 189 GLU A 192 MET A 193 SITE 6 AC2 27 PRO A 194 LEU A 197 THR A 201 ASP A 204 SITE 7 AC2 27 HIS A 208 HIS A 288 MN A 501 CRYST1 57.920 104.840 129.360 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007730 0.00000