HEADER DNA BINDING PROTEIN/DNA 30-NOV-17 5YWS TITLE CRYSTAL STRUCTURE OF TREX1 IN COMPLEX WITH A Y STRUCTURED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREE-PRIME REPAIR EXONUCLEASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3'-5' EXONUCLEASE TREX1,DNASE III; COMPND 5 EC: 3.1.11.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: A STEM LOOP DNA WITH Y-STRUCTURAL TERMINAL; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TREX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS DEDDH, EXOUCLEASE, PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.HSIAO REVDAT 2 22-NOV-23 5YWS 1 LINK REVDAT 1 23-MAY-18 5YWS 0 JRNL AUTH K.W.HUANG,T.C.LIU,R.Y.LIANG,L.Y.CHU,H.L.CHENG,J.W.CHU, JRNL AUTH 2 Y.Y.HSIAO JRNL TITL STRUCTURAL BASIS FOR OVERHANG EXCISION AND TERMINAL JRNL TITL 2 UNWINDING OF DNA DUPLEXES BY TREX1 JRNL REF PLOS BIOL. V. 16 05653 2018 JRNL REFN ESSN 1545-7885 JRNL PMID 29734329 JRNL DOI 10.1371/JOURNAL.PBIO.2005653 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 38969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.710 REMARK 3 FREE R VALUE TEST SET COUNT : 3005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3329 - 5.5063 0.93 1788 149 0.1746 0.2277 REMARK 3 2 5.5063 - 4.3752 1.00 1780 181 0.1458 0.1796 REMARK 3 3 4.3752 - 3.8235 1.00 1815 144 0.1488 0.1859 REMARK 3 4 3.8235 - 3.4745 0.97 1706 159 0.1672 0.1979 REMARK 3 5 3.4745 - 3.2258 1.00 1795 137 0.1853 0.2122 REMARK 3 6 3.2258 - 3.0358 1.00 1755 158 0.2075 0.2373 REMARK 3 7 3.0358 - 2.8839 1.00 1769 148 0.2071 0.2617 REMARK 3 8 2.8839 - 2.7585 1.00 1769 133 0.2042 0.2542 REMARK 3 9 2.7585 - 2.6523 1.00 1759 143 0.2021 0.2632 REMARK 3 10 2.6523 - 2.5609 1.00 1731 172 0.1989 0.2164 REMARK 3 11 2.5609 - 2.4808 1.00 1756 114 0.1897 0.2291 REMARK 3 12 2.4808 - 2.4100 1.00 1760 135 0.1962 0.2199 REMARK 3 13 2.4100 - 2.3466 1.00 1775 135 0.2011 0.2172 REMARK 3 14 2.3466 - 2.2893 1.00 1722 144 0.2119 0.2590 REMARK 3 15 2.2893 - 2.2373 0.71 1263 95 0.3572 0.4491 REMARK 3 16 2.2373 - 2.1897 0.81 1404 124 0.2326 0.2673 REMARK 3 17 2.1897 - 2.1459 1.00 1719 160 0.2058 0.2301 REMARK 3 18 2.1459 - 2.1054 1.00 1733 138 0.2075 0.2583 REMARK 3 19 2.1054 - 2.0678 1.00 1771 123 0.2185 0.2587 REMARK 3 20 2.0678 - 2.0328 1.00 1733 157 0.2227 0.2623 REMARK 3 21 2.0328 - 2.0000 0.97 1661 156 0.2306 0.2849 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4490 REMARK 3 ANGLE : 0.851 6266 REMARK 3 CHIRALITY : 0.032 714 REMARK 3 PLANARITY : 0.003 691 REMARK 3 DIHEDRAL : 18.763 1723 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -21.7487 15.3406 -11.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1805 REMARK 3 T33: 0.1751 T12: 0.0254 REMARK 3 T13: -0.0044 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.7328 L22: 1.0824 REMARK 3 L33: 0.8809 L12: 0.2067 REMARK 3 L13: 0.0612 L23: -0.2492 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.0297 S13: -0.0244 REMARK 3 S21: -0.0242 S22: -0.0166 S23: -0.0260 REMARK 3 S31: 0.0779 S32: 0.0169 S33: 0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006032. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3MXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE TRIHYDRATE PH 4.5, REMARK 280 30%(V/V) POLYETHYLENE GLYCOL 300, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.76600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.55600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.30200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.55600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.76600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.30200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 236 REMARK 465 ALA A 237 REMARK 465 THR A 238 REMARK 465 THR A 239 REMARK 465 GLY A 240 REMARK 465 THR A 241 REMARK 465 THR A 242 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ARG B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 236 REMARK 465 ALA B 237 REMARK 465 THR B 238 REMARK 465 THR B 239 REMARK 465 GLY B 240 REMARK 465 THR B 241 REMARK 465 THR B 242 REMARK 465 DC C 10 REMARK 465 DT C 11 REMARK 465 DT C 12 REMARK 465 DT C 13 REMARK 465 DA C 14 REMARK 465 DT D 11 REMARK 465 DT D 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 166 HZ1 LYS B 211 1.57 REMARK 500 OH TYR B 177 O HOH B 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 8 26.20 -146.59 REMARK 500 TYR A 129 -74.90 -137.89 REMARK 500 ASN A 171 38.93 71.99 REMARK 500 TYR B 129 -73.69 -142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 579 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD2 REMARK 620 2 GLU A 20 OE1 81.0 REMARK 620 3 ASP A 200 OD2 106.3 112.1 REMARK 620 4 DC C 22 OP1 115.3 127.2 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 HOH A 417 O 81.8 REMARK 620 3 HOH A 465 O 87.3 80.4 REMARK 620 4 HOH A 526 O 92.4 167.3 88.1 REMARK 620 5 DT C 21 O3' 157.9 86.4 109.1 102.6 REMARK 620 6 DC C 22 OP1 101.6 96.9 170.4 95.2 61.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD2 REMARK 620 2 GLU B 20 OE1 88.9 REMARK 620 3 ASP B 200 OD2 103.3 105.4 REMARK 620 4 DC D 22 OP1 128.4 124.5 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 18 OD1 REMARK 620 2 HOH B 424 O 78.1 REMARK 620 3 HOH B 447 O 89.9 82.7 REMARK 620 4 HOH B 542 O 88.3 163.5 88.0 REMARK 620 5 DT D 21 O3' 150.9 88.2 113.9 108.2 REMARK 620 6 DC D 22 OP1 95.3 97.0 174.7 93.4 60.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 DBREF 5YWS A 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 DBREF 5YWS B 1 242 UNP Q91XB0 TREX1_MOUSE 1 242 DBREF 5YWS C 1 22 PDB 5YWS 5YWS 1 22 DBREF 5YWS D 1 22 PDB 5YWS 5YWS 1 22 SEQADV 5YWS MET A -33 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -32 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -31 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -30 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -29 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -28 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -27 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -26 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -25 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -24 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -23 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -22 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -21 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS LEU A -20 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS VAL A -19 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS PRO A -18 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ARG A -17 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -16 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -15 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS A -14 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET A -13 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ALA A -12 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A -11 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET A -10 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS THR A -9 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -8 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -7 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLN A -6 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLN A -5 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET A -4 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -3 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ARG A -2 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY A -1 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER A 0 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET B -33 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -32 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -31 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -30 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -29 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -28 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -27 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -26 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -25 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -24 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -23 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -22 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -21 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS LEU B -20 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS VAL B -19 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS PRO B -18 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ARG B -17 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -16 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -15 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS HIS B -14 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET B -13 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ALA B -12 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B -11 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET B -10 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS THR B -9 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -8 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -7 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLN B -6 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLN B -5 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS MET B -4 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -3 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS ARG B -2 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS GLY B -1 UNP Q91XB0 EXPRESSION TAG SEQADV 5YWS SER B 0 UNP Q91XB0 EXPRESSION TAG SEQRES 1 A 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 276 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 276 GLY GLN GLN MET GLY ARG GLY SER MET GLY SER GLN THR SEQRES 4 A 276 LEU PRO HIS GLY HIS MET GLN THR LEU ILE PHE LEU ASP SEQRES 5 A 276 LEU GLU ALA THR GLY LEU PRO SER SER ARG PRO GLU VAL SEQRES 6 A 276 THR GLU LEU CYS LEU LEU ALA VAL HIS ARG ARG ALA LEU SEQRES 7 A 276 GLU ASN THR SER ILE SER GLN GLY HIS PRO PRO PRO VAL SEQRES 8 A 276 PRO ARG PRO PRO ARG VAL VAL ASP LYS LEU SER LEU CYS SEQRES 9 A 276 ILE ALA PRO GLY LYS ALA CYS SER PRO GLY ALA SER GLU SEQRES 10 A 276 ILE THR GLY LEU SER LYS ALA GLU LEU GLU VAL GLN GLY SEQRES 11 A 276 ARG GLN ARG PHE ASP ASP ASN LEU ALA ILE LEU LEU ARG SEQRES 12 A 276 ALA PHE LEU GLN ARG GLN PRO GLN PRO CYS CYS LEU VAL SEQRES 13 A 276 ALA HIS ASN GLY ASP ARG TYR ASP PHE PRO LEU LEU GLN SEQRES 14 A 276 THR GLU LEU ALA ARG LEU SER THR PRO SER PRO LEU ASP SEQRES 15 A 276 GLY THR PHE CYS VAL ASP SER ILE ALA ALA LEU LYS ALA SEQRES 16 A 276 LEU GLU GLN ALA SER SER PRO SER GLY ASN GLY SER ARG SEQRES 17 A 276 LYS SER TYR SER LEU GLY SER ILE TYR THR ARG LEU TYR SEQRES 18 A 276 TRP GLN ALA PRO THR ASP SER HIS THR ALA GLU GLY ASP SEQRES 19 A 276 VAL LEU THR LEU LEU SER ILE CYS GLN TRP LYS PRO GLN SEQRES 20 A 276 ALA LEU LEU GLN TRP VAL ASP GLU HIS ALA ARG PRO PHE SEQRES 21 A 276 SER THR VAL LYS PRO MET TYR GLY THR PRO ALA THR THR SEQRES 22 A 276 GLY THR THR SEQRES 1 B 276 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 276 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 276 GLY GLN GLN MET GLY ARG GLY SER MET GLY SER GLN THR SEQRES 4 B 276 LEU PRO HIS GLY HIS MET GLN THR LEU ILE PHE LEU ASP SEQRES 5 B 276 LEU GLU ALA THR GLY LEU PRO SER SER ARG PRO GLU VAL SEQRES 6 B 276 THR GLU LEU CYS LEU LEU ALA VAL HIS ARG ARG ALA LEU SEQRES 7 B 276 GLU ASN THR SER ILE SER GLN GLY HIS PRO PRO PRO VAL SEQRES 8 B 276 PRO ARG PRO PRO ARG VAL VAL ASP LYS LEU SER LEU CYS SEQRES 9 B 276 ILE ALA PRO GLY LYS ALA CYS SER PRO GLY ALA SER GLU SEQRES 10 B 276 ILE THR GLY LEU SER LYS ALA GLU LEU GLU VAL GLN GLY SEQRES 11 B 276 ARG GLN ARG PHE ASP ASP ASN LEU ALA ILE LEU LEU ARG SEQRES 12 B 276 ALA PHE LEU GLN ARG GLN PRO GLN PRO CYS CYS LEU VAL SEQRES 13 B 276 ALA HIS ASN GLY ASP ARG TYR ASP PHE PRO LEU LEU GLN SEQRES 14 B 276 THR GLU LEU ALA ARG LEU SER THR PRO SER PRO LEU ASP SEQRES 15 B 276 GLY THR PHE CYS VAL ASP SER ILE ALA ALA LEU LYS ALA SEQRES 16 B 276 LEU GLU GLN ALA SER SER PRO SER GLY ASN GLY SER ARG SEQRES 17 B 276 LYS SER TYR SER LEU GLY SER ILE TYR THR ARG LEU TYR SEQRES 18 B 276 TRP GLN ALA PRO THR ASP SER HIS THR ALA GLU GLY ASP SEQRES 19 B 276 VAL LEU THR LEU LEU SER ILE CYS GLN TRP LYS PRO GLN SEQRES 20 B 276 ALA LEU LEU GLN TRP VAL ASP GLU HIS ALA ARG PRO PHE SEQRES 21 B 276 SER THR VAL LYS PRO MET TYR GLY THR PRO ALA THR THR SEQRES 22 B 276 GLY THR THR SEQRES 1 C 22 DG DT DT DG DG DC DC DC DT DC DT DT DT SEQRES 2 C 22 DA DG DG DG DC DC DA DT DC SEQRES 1 D 22 DG DT DT DG DG DC DC DC DT DC DT DT DT SEQRES 2 D 22 DA DG DG DG DC DC DA DT DC HET MG A 301 1 HET MG A 302 1 HET MG B 301 1 HET MG B 302 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *413(H2 O) HELIX 1 AA1 LEU A 24 ARG A 28 5 5 HELIX 2 AA2 ARG A 41 ASN A 46 1 6 HELIX 3 AA3 SER A 78 GLY A 86 1 9 HELIX 4 AA4 SER A 88 GLN A 95 1 8 HELIX 5 AA5 ASP A 101 ARG A 114 1 14 HELIX 6 AA6 TYR A 129 ARG A 140 1 12 HELIX 7 AA7 SER A 155 SER A 166 1 12 HELIX 8 AA8 SER A 178 TRP A 188 1 11 HELIX 9 AA9 THR A 196 GLN A 209 1 14 HELIX 10 AB1 LYS A 211 ALA A 223 1 13 HELIX 11 AB2 SER A 227 VAL A 229 5 3 HELIX 12 AB3 LEU B 24 ARG B 28 5 5 HELIX 13 AB4 ARG B 41 ASN B 46 1 6 HELIX 14 AB5 SER B 78 GLY B 86 1 9 HELIX 15 AB6 SER B 88 GLN B 95 1 8 HELIX 16 AB7 ASP B 101 ARG B 114 1 14 HELIX 17 AB8 TYR B 129 ARG B 140 1 12 HELIX 18 AB9 SER B 155 ALA B 165 1 11 HELIX 19 AC1 SER B 178 TRP B 188 1 11 HELIX 20 AC2 THR B 196 GLN B 209 1 14 HELIX 21 AC3 LYS B 211 ALA B 223 1 13 HELIX 22 AC4 SER B 227 VAL B 229 5 3 SHEET 1 AA112 ARG A 224 PRO A 225 0 SHEET 2 AA112 PHE A 151 ASP A 154 -1 N CYS A 152 O ARG A 224 SHEET 3 AA112 CYS A 119 ALA A 123 1 N LEU A 121 O PHE A 151 SHEET 4 AA112 THR A 13 ALA A 21 1 N LEU A 17 O VAL A 122 SHEET 5 AA112 VAL A 31 HIS A 40 -1 O THR A 32 N GLU A 20 SHEET 6 AA112 ASP A 65 CYS A 70 -1 O ASP A 65 N ALA A 38 SHEET 7 AA112 ASP B 65 CYS B 70 -1 O LYS B 66 N SER A 68 SHEET 8 AA112 VAL B 31 HIS B 40 -1 N LEU B 36 O LEU B 67 SHEET 9 AA112 THR B 13 ALA B 21 -1 N GLU B 20 O THR B 32 SHEET 10 AA112 CYS B 119 ALA B 123 1 O VAL B 122 N LEU B 17 SHEET 11 AA112 PHE B 151 ASP B 154 1 O PHE B 151 N LEU B 121 SHEET 12 AA112 ARG B 224 PRO B 225 -1 O ARG B 224 N CYS B 152 LINK OD2 ASP A 18 MG MG A 301 1555 1555 2.39 LINK OD1 ASP A 18 MG MG A 302 1555 1555 2.18 LINK OE1 GLU A 20 MG MG A 301 1555 1555 2.31 LINK OD2 ASP A 200 MG MG A 301 1555 1555 2.14 LINK MG MG A 301 OP1 DC C 22 1555 1555 2.29 LINK MG MG A 302 O HOH A 417 1555 1555 2.45 LINK MG MG A 302 O HOH A 465 1555 1555 2.20 LINK MG MG A 302 O HOH A 526 1555 1555 2.37 LINK MG MG A 302 O3' DT C 21 1555 1555 2.55 LINK MG MG A 302 OP1 DC C 22 1555 1555 2.29 LINK OD2 ASP B 18 MG MG B 301 1555 1555 2.21 LINK OD1 ASP B 18 MG MG B 302 1555 1555 2.34 LINK OE1 GLU B 20 MG MG B 301 1555 1555 2.26 LINK OD2 ASP B 200 MG MG B 301 1555 1555 2.15 LINK MG MG B 301 OP1 DC D 22 1555 1555 2.14 LINK MG MG B 302 O HOH B 424 1555 1555 2.41 LINK MG MG B 302 O HOH B 447 1555 1555 2.18 LINK MG MG B 302 O HOH B 542 1555 1555 2.44 LINK MG MG B 302 O3' DT D 21 1555 1555 2.43 LINK MG MG B 302 OP1 DC D 22 1555 1555 2.47 CISPEP 1 HIS A 53 PRO A 54 0 4.16 CISPEP 2 GLN A 117 PRO A 118 0 -1.48 CISPEP 3 PRO A 168 SER A 169 0 -1.18 CISPEP 4 SER A 169 GLY A 170 0 11.06 CISPEP 5 HIS B 53 PRO B 54 0 4.28 CISPEP 6 GLN B 117 PRO B 118 0 1.48 CISPEP 7 PRO B 168 SER B 169 0 5.67 SITE 1 AC1 5 ASP A 18 GLU A 20 ASP A 200 MG A 302 SITE 2 AC1 5 DC C 22 SITE 1 AC2 7 ASP A 18 MG A 301 HOH A 417 HOH A 465 SITE 2 AC2 7 HOH A 526 DT C 21 DC C 22 SITE 1 AC3 5 ASP B 18 GLU B 20 ASP B 200 MG B 302 SITE 2 AC3 5 DC D 22 SITE 1 AC4 7 ASP B 18 MG B 301 HOH B 424 HOH B 447 SITE 2 AC4 7 HOH B 542 DT D 21 DC D 22 CRYST1 59.532 96.604 101.112 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016798 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009890 0.00000