HEADER VIRAL PROTEIN 04-DEC-17 5YXA TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF NS1 PROTEIN FROM TITLE 2 YELLOW FEVER VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NS1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YELLOW FEVER VIRUS; SOURCE 3 ORGANISM_TAXID: 11089; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS YELLOW FEVER VIRUS, NS1, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,H.SONG,J.QI,Y.SHI,G.F.GAO REVDAT 5 06-NOV-24 5YXA 1 REMARK REVDAT 4 22-NOV-23 5YXA 1 REMARK REVDAT 3 07-FEB-18 5YXA 1 AUTHOR REVDAT 2 31-JAN-18 5YXA 1 JRNL REVDAT 1 24-JAN-18 5YXA 0 JRNL AUTH H.WANG,M.HAN,J.QI,R.HILGENFELD,T.LUO,Y.SHI,G.F.GAO,H.SONG JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF NS1 PROTEIN JRNL TITL 2 FROM YELLOW FEVER VIRUS. JRNL REF SCI CHINA LIFE SCI V. 60 1403 2017 JRNL REFN ESSN 1869-1889 JRNL PMID 29285718 JRNL DOI 10.1007/S11427-017-9238-8 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6207 - 5.6847 1.00 2831 153 0.1905 0.2126 REMARK 3 2 5.6847 - 4.5139 1.00 2693 145 0.1636 0.2183 REMARK 3 3 4.5139 - 3.9438 1.00 2684 131 0.1660 0.1955 REMARK 3 4 3.9438 - 3.5834 1.00 2647 142 0.2059 0.2277 REMARK 3 5 3.5834 - 3.3267 1.00 2638 152 0.2318 0.2640 REMARK 3 6 3.3267 - 3.1306 1.00 2630 135 0.2560 0.2842 REMARK 3 7 3.1306 - 2.9739 1.00 2623 136 0.2479 0.2558 REMARK 3 8 2.9739 - 2.8445 1.00 2613 151 0.2536 0.2849 REMARK 3 9 2.8445 - 2.7350 1.00 2609 135 0.2571 0.3277 REMARK 3 10 2.7350 - 2.6406 1.00 2607 141 0.2543 0.2905 REMARK 3 11 2.6406 - 2.5581 1.00 2593 139 0.2608 0.2887 REMARK 3 12 2.5581 - 2.4850 1.00 2621 128 0.2709 0.3345 REMARK 3 13 2.4850 - 2.4195 1.00 2616 127 0.2649 0.2954 REMARK 3 14 2.4195 - 2.3605 1.00 2564 163 0.2777 0.3209 REMARK 3 15 2.3605 - 2.3069 1.00 2596 145 0.2700 0.3405 REMARK 3 16 2.3069 - 2.2578 1.00 2591 135 0.2767 0.3305 REMARK 3 17 2.2578 - 2.2126 1.00 2609 122 0.2827 0.3370 REMARK 3 18 2.2126 - 2.1709 1.00 2572 146 0.2740 0.3079 REMARK 3 19 2.1709 - 2.1321 1.00 2591 148 0.3007 0.3573 REMARK 3 20 2.1321 - 2.0959 0.98 2541 131 0.3166 0.3526 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5592 REMARK 3 ANGLE : 0.995 7588 REMARK 3 CHIRALITY : 0.039 816 REMARK 3 PLANARITY : 0.004 972 REMARK 3 DIHEDRAL : 13.983 2016 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 27.2805 -2.5055 -8.1425 REMARK 3 T TENSOR REMARK 3 T11: 0.3603 T22: 0.3065 REMARK 3 T33: 0.3441 T12: 0.0195 REMARK 3 T13: -0.0139 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.8153 L22: 0.7231 REMARK 3 L33: 1.6250 L12: 0.1500 REMARK 3 L13: -0.6185 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0664 S12: 0.1418 S13: -0.1396 REMARK 3 S21: -0.0369 S22: 0.0843 S23: -0.0050 REMARK 3 S31: 0.1675 S32: 0.0698 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 1.3747 -6.4013 -31.5789 REMARK 3 T TENSOR REMARK 3 T11: 0.3385 T22: 0.4192 REMARK 3 T33: 0.3602 T12: -0.0402 REMARK 3 T13: -0.0069 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.3950 L22: 1.0278 REMARK 3 L33: 1.4976 L12: -0.2516 REMARK 3 L13: -0.6507 L23: 0.7911 REMARK 3 S TENSOR REMARK 3 S11: 0.0534 S12: -0.1153 S13: -0.0674 REMARK 3 S21: 0.1610 S22: -0.0693 S23: -0.0515 REMARK 3 S31: 0.1362 S32: -0.2082 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 15.1100 23.1076 1.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.2843 REMARK 3 T33: 0.4146 T12: 0.0078 REMARK 3 T13: -0.0385 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 1.1139 L22: 3.4230 REMARK 3 L33: 1.9495 L12: 0.1603 REMARK 3 L13: 0.0931 L23: -2.3459 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.1322 S13: 0.2069 REMARK 3 S21: -0.2251 S22: 0.1393 S23: 0.3839 REMARK 3 S31: 0.1363 S32: 0.1415 S33: 0.0976 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 21.1826 15.5662 -42.4514 REMARK 3 T TENSOR REMARK 3 T11: 0.6293 T22: 0.5037 REMARK 3 T33: 0.4854 T12: -0.1386 REMARK 3 T13: -0.0728 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 0.8446 L22: 0.5451 REMARK 3 L33: 1.2356 L12: -0.1388 REMARK 3 L13: 0.4963 L23: -0.0178 REMARK 3 S TENSOR REMARK 3 S11: -0.1339 S12: 0.0275 S13: 0.2297 REMARK 3 S21: 0.1097 S22: -0.0238 S23: -0.1859 REMARK 3 S31: -0.5752 S32: 0.4231 S33: -0.0039 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5IY3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M TRIS, 1.0M BICINE PH 8.5, 0.12M REMARK 280 OF AN ALCOHOLS (0.2M 1,6-HEXANEDIOL, 0.2M 1-BUTANOL, 0.2M 1,2- REMARK 280 PROPANEDIOL, 0.2M 2-PROPANOL, 0.2M 1,4-BUTANEDIOL, 0.2M 1,3- REMARK 280 PROPANEDIOL), 18% PEG-MME 500, 18% PEG 20K, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.14550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.60750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.05200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.60750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.14550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.05200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 29.14550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 69.60750 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 29.14550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -69.60750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 PHE A 2 REMARK 465 ASP A 3 REMARK 465 TYR A 4 REMARK 465 THR B 1 REMARK 465 PHE B 2 REMARK 465 ASP B 3 REMARK 465 TYR B 4 REMARK 465 THR C 1 REMARK 465 PHE C 2 REMARK 465 ASP C 3 REMARK 465 TYR C 4 REMARK 465 THR D 1 REMARK 465 PHE D 2 REMARK 465 ASP D 3 REMARK 465 TYR D 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 49 O HOH B 201 1.87 REMARK 500 OD1 ASP B 171 NH2 ARG B 176 2.04 REMARK 500 O SER C 177 O HOH C 201 2.08 REMARK 500 O GLY A 62 OG SER A 64 2.12 REMARK 500 O HOH A 213 O HOH A 238 2.12 REMARK 500 OG SER A 133 O HOH A 201 2.14 REMARK 500 NZ LYS C 51 O HOH C 202 2.14 REMARK 500 OE2 GLU C 35 O HOH C 203 2.15 REMARK 500 OE2 GLU D 35 O HOH D 201 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP C 49 OG SER C 118 4455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 94.21 -68.56 REMARK 500 SER A 64 -60.12 -153.53 REMARK 500 PRO A 96 48.08 -84.69 REMARK 500 GLN A 99 47.86 -85.55 REMARK 500 GLU A 107 136.67 -177.53 REMARK 500 SER A 144 23.20 -158.83 REMARK 500 SER B 64 -51.45 -157.48 REMARK 500 PHE B 71 -60.19 -94.32 REMARK 500 PRO B 96 42.62 -86.31 REMARK 500 GLU B 107 135.04 -177.29 REMARK 500 SER B 144 30.55 -154.28 REMARK 500 SER C 64 -62.16 -156.56 REMARK 500 PRO C 96 49.67 -84.90 REMARK 500 GLN C 99 45.89 -84.67 REMARK 500 SER C 144 27.24 -152.60 REMARK 500 ASP D 9 99.65 -66.98 REMARK 500 SER D 64 -64.24 -157.27 REMARK 500 PHE D 71 -60.07 -102.40 REMARK 500 PRO D 96 47.46 -83.88 REMARK 500 GLN D 99 48.85 -87.24 REMARK 500 GLU D 107 131.79 -173.03 REMARK 500 SER D 144 27.72 -155.34 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5YXA A 1 181 UNP A0A161I252_9FLAV DBREF2 5YXA A A0A161I252 950 1130 DBREF1 5YXA B 1 181 UNP A0A161I252_9FLAV DBREF2 5YXA B A0A161I252 950 1130 DBREF1 5YXA C 1 181 UNP A0A161I252_9FLAV DBREF2 5YXA C A0A161I252 950 1130 DBREF1 5YXA D 1 181 UNP A0A161I252_9FLAV DBREF2 5YXA D A0A161I252 950 1130 SEQRES 1 A 181 THR PHE ASP TYR SER VAL ASP CYS ASP GLY ALA ILE LEU SEQRES 2 A 181 GLY ALA ALA VAL ASN GLY LYS LYS SER ALA HIS GLY SER SEQRES 3 A 181 PRO THR PHE TRP MET GLY SER HIS GLU VAL ASN GLY THR SEQRES 4 A 181 TRP MET ILE HIS THR LEU GLU THR LEU ASP TYR LYS GLU SEQRES 5 A 181 CYS GLU TRP PRO LEU THR HIS THR ILE GLY THR SER VAL SEQRES 6 A 181 GLU GLU SER ASP MET PHE MET PRO ARG SER ILE GLY GLY SEQRES 7 A 181 PRO VAL SER SER HIS ASN ARG ILE PRO GLY TYR LYS VAL SEQRES 8 A 181 GLN THR ASN GLY PRO TRP MET GLN VAL PRO LEU GLU VAL SEQRES 9 A 181 LYS ARG GLU VAL CYS PRO GLY THR SER VAL VAL VAL ASP SEQRES 10 A 181 SER ASN CYS ASP GLY ARG GLY LYS SER THR ARG SER THR SEQRES 11 A 181 THR ASP SER GLY LYS ILE ILE PRO GLU TRP CYS CYS ARG SEQRES 12 A 181 SER CYS THR MET PRO PRO VAL SER PHE HIS GLY SER ASP SEQRES 13 A 181 GLY CYS TRP TYR PRO MET GLU ILE ARG PRO MET LYS THR SEQRES 14 A 181 SER ASP SER HIS LEU VAL ARG SER TRP VAL THR ALA SEQRES 1 B 181 THR PHE ASP TYR SER VAL ASP CYS ASP GLY ALA ILE LEU SEQRES 2 B 181 GLY ALA ALA VAL ASN GLY LYS LYS SER ALA HIS GLY SER SEQRES 3 B 181 PRO THR PHE TRP MET GLY SER HIS GLU VAL ASN GLY THR SEQRES 4 B 181 TRP MET ILE HIS THR LEU GLU THR LEU ASP TYR LYS GLU SEQRES 5 B 181 CYS GLU TRP PRO LEU THR HIS THR ILE GLY THR SER VAL SEQRES 6 B 181 GLU GLU SER ASP MET PHE MET PRO ARG SER ILE GLY GLY SEQRES 7 B 181 PRO VAL SER SER HIS ASN ARG ILE PRO GLY TYR LYS VAL SEQRES 8 B 181 GLN THR ASN GLY PRO TRP MET GLN VAL PRO LEU GLU VAL SEQRES 9 B 181 LYS ARG GLU VAL CYS PRO GLY THR SER VAL VAL VAL ASP SEQRES 10 B 181 SER ASN CYS ASP GLY ARG GLY LYS SER THR ARG SER THR SEQRES 11 B 181 THR ASP SER GLY LYS ILE ILE PRO GLU TRP CYS CYS ARG SEQRES 12 B 181 SER CYS THR MET PRO PRO VAL SER PHE HIS GLY SER ASP SEQRES 13 B 181 GLY CYS TRP TYR PRO MET GLU ILE ARG PRO MET LYS THR SEQRES 14 B 181 SER ASP SER HIS LEU VAL ARG SER TRP VAL THR ALA SEQRES 1 C 181 THR PHE ASP TYR SER VAL ASP CYS ASP GLY ALA ILE LEU SEQRES 2 C 181 GLY ALA ALA VAL ASN GLY LYS LYS SER ALA HIS GLY SER SEQRES 3 C 181 PRO THR PHE TRP MET GLY SER HIS GLU VAL ASN GLY THR SEQRES 4 C 181 TRP MET ILE HIS THR LEU GLU THR LEU ASP TYR LYS GLU SEQRES 5 C 181 CYS GLU TRP PRO LEU THR HIS THR ILE GLY THR SER VAL SEQRES 6 C 181 GLU GLU SER ASP MET PHE MET PRO ARG SER ILE GLY GLY SEQRES 7 C 181 PRO VAL SER SER HIS ASN ARG ILE PRO GLY TYR LYS VAL SEQRES 8 C 181 GLN THR ASN GLY PRO TRP MET GLN VAL PRO LEU GLU VAL SEQRES 9 C 181 LYS ARG GLU VAL CYS PRO GLY THR SER VAL VAL VAL ASP SEQRES 10 C 181 SER ASN CYS ASP GLY ARG GLY LYS SER THR ARG SER THR SEQRES 11 C 181 THR ASP SER GLY LYS ILE ILE PRO GLU TRP CYS CYS ARG SEQRES 12 C 181 SER CYS THR MET PRO PRO VAL SER PHE HIS GLY SER ASP SEQRES 13 C 181 GLY CYS TRP TYR PRO MET GLU ILE ARG PRO MET LYS THR SEQRES 14 C 181 SER ASP SER HIS LEU VAL ARG SER TRP VAL THR ALA SEQRES 1 D 181 THR PHE ASP TYR SER VAL ASP CYS ASP GLY ALA ILE LEU SEQRES 2 D 181 GLY ALA ALA VAL ASN GLY LYS LYS SER ALA HIS GLY SER SEQRES 3 D 181 PRO THR PHE TRP MET GLY SER HIS GLU VAL ASN GLY THR SEQRES 4 D 181 TRP MET ILE HIS THR LEU GLU THR LEU ASP TYR LYS GLU SEQRES 5 D 181 CYS GLU TRP PRO LEU THR HIS THR ILE GLY THR SER VAL SEQRES 6 D 181 GLU GLU SER ASP MET PHE MET PRO ARG SER ILE GLY GLY SEQRES 7 D 181 PRO VAL SER SER HIS ASN ARG ILE PRO GLY TYR LYS VAL SEQRES 8 D 181 GLN THR ASN GLY PRO TRP MET GLN VAL PRO LEU GLU VAL SEQRES 9 D 181 LYS ARG GLU VAL CYS PRO GLY THR SER VAL VAL VAL ASP SEQRES 10 D 181 SER ASN CYS ASP GLY ARG GLY LYS SER THR ARG SER THR SEQRES 11 D 181 THR ASP SER GLY LYS ILE ILE PRO GLU TRP CYS CYS ARG SEQRES 12 D 181 SER CYS THR MET PRO PRO VAL SER PHE HIS GLY SER ASP SEQRES 13 D 181 GLY CYS TRP TYR PRO MET GLU ILE ARG PRO MET LYS THR SEQRES 14 D 181 SER ASP SER HIS LEU VAL ARG SER TRP VAL THR ALA FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 ASP A 9 LEU A 13 5 5 HELIX 2 AA2 PRO A 56 THR A 60 5 5 HELIX 3 AA3 GLU A 66 MET A 70 5 5 HELIX 4 AA4 PRO A 73 GLY A 77 5 5 HELIX 5 AA5 ASP B 9 LEU B 13 5 5 HELIX 6 AA6 PRO B 56 THR B 60 5 5 HELIX 7 AA7 GLU B 66 MET B 70 5 5 HELIX 8 AA8 PRO B 73 GLY B 77 5 5 HELIX 9 AA9 SER B 170 LEU B 174 5 5 HELIX 10 AB1 ASP C 9 LEU C 13 5 5 HELIX 11 AB2 PRO C 56 THR C 60 5 5 HELIX 12 AB3 GLU C 66 MET C 70 5 5 HELIX 13 AB4 PRO C 73 GLY C 77 5 5 HELIX 14 AB5 SER C 170 LEU C 174 5 5 HELIX 15 AB6 ASP D 9 LEU D 13 5 5 HELIX 16 AB7 PRO D 56 THR D 60 5 5 HELIX 17 AB8 GLU D 66 MET D 70 5 5 HELIX 18 AB9 PRO D 73 GLY D 77 5 5 HELIX 19 AC1 SER D 170 LEU D 174 5 5 SHEET 1 AA1 8 GLY A 14 ASN A 18 0 SHEET 2 AA1 8 LYS A 21 SER A 26 -1 O GLY A 25 N GLY A 14 SHEET 3 AA1 8 PHE A 29 VAL A 36 -1 O MET A 31 N HIS A 24 SHEET 4 AA1 8 THR A 39 THR A 47 -1 O THR A 39 N VAL A 36 SHEET 5 AA1 8 LEU A 102 ARG A 106 -1 O LEU A 102 N THR A 47 SHEET 6 AA1 8 VAL A 150 GLY A 154 -1 O HIS A 153 N GLU A 103 SHEET 7 AA1 8 GLY A 157 TYR A 160 -1 O TRP A 159 N PHE A 152 SHEET 8 AA1 8 THR A 127 ARG A 128 -1 N THR A 127 O TYR A 160 SHEET 1 AA2 3 SER A 113 VAL A 116 0 SHEET 2 AA2 3 GLU A 139 CYS A 142 1 O CYS A 142 N VAL A 115 SHEET 3 AA2 3 ARG A 165 PRO A 166 -1 O ARG A 165 N CYS A 141 SHEET 1 AA3 7 GLY B 14 ASN B 18 0 SHEET 2 AA3 7 LYS B 21 SER B 26 -1 O GLY B 25 N GLY B 14 SHEET 3 AA3 7 PHE B 29 VAL B 36 -1 O MET B 31 N HIS B 24 SHEET 4 AA3 7 THR B 39 THR B 47 -1 O HIS B 43 N GLY B 32 SHEET 5 AA3 7 LEU B 102 ARG B 106 -1 O LEU B 102 N THR B 47 SHEET 6 AA3 7 VAL B 150 GLY B 154 -1 O HIS B 153 N GLU B 103 SHEET 7 AA3 7 GLY B 157 TRP B 159 -1 O GLY B 157 N GLY B 154 SHEET 1 AA4 3 SER B 113 VAL B 116 0 SHEET 2 AA4 3 GLU B 139 CYS B 142 1 O CYS B 142 N VAL B 115 SHEET 3 AA4 3 ARG B 165 PRO B 166 -1 O ARG B 165 N CYS B 141 SHEET 1 AA5 7 GLY C 14 ASN C 18 0 SHEET 2 AA5 7 LYS C 21 SER C 26 -1 O GLY C 25 N GLY C 14 SHEET 3 AA5 7 PHE C 29 VAL C 36 -1 O MET C 31 N HIS C 24 SHEET 4 AA5 7 THR C 39 THR C 47 -1 O HIS C 43 N GLY C 32 SHEET 5 AA5 7 LEU C 102 ARG C 106 -1 O LEU C 102 N THR C 47 SHEET 6 AA5 7 VAL C 150 GLY C 154 -1 O SER C 151 N LYS C 105 SHEET 7 AA5 7 GLY C 157 TRP C 159 -1 O GLY C 157 N GLY C 154 SHEET 1 AA6 3 VAL C 114 VAL C 116 0 SHEET 2 AA6 3 TRP C 140 CYS C 142 1 O TRP C 140 N VAL C 115 SHEET 3 AA6 3 ARG C 165 PRO C 166 -1 O ARG C 165 N CYS C 141 SHEET 1 AA7 7 GLY D 14 ASN D 18 0 SHEET 2 AA7 7 LYS D 21 SER D 26 -1 O GLY D 25 N GLY D 14 SHEET 3 AA7 7 PHE D 29 VAL D 36 -1 O MET D 31 N HIS D 24 SHEET 4 AA7 7 THR D 39 THR D 47 -1 O HIS D 43 N GLY D 32 SHEET 5 AA7 7 LEU D 102 ARG D 106 -1 O LEU D 102 N THR D 47 SHEET 6 AA7 7 VAL D 150 GLY D 154 -1 O SER D 151 N LYS D 105 SHEET 7 AA7 7 GLY D 157 TRP D 159 -1 O GLY D 157 N GLY D 154 SHEET 1 AA8 3 SER D 113 VAL D 116 0 SHEET 2 AA8 3 GLU D 139 CYS D 142 1 O CYS D 142 N VAL D 115 SHEET 3 AA8 3 ARG D 165 PRO D 166 -1 O ARG D 165 N CYS D 141 SSBOND 1 CYS A 8 CYS A 53 1555 1555 2.06 SSBOND 2 CYS A 109 CYS A 158 1555 1555 2.03 SSBOND 3 CYS A 120 CYS A 141 1555 1555 2.04 SSBOND 4 CYS A 142 CYS A 145 1555 1555 2.06 SSBOND 5 CYS B 8 CYS B 53 1555 1555 2.04 SSBOND 6 CYS B 109 CYS B 158 1555 1555 2.03 SSBOND 7 CYS B 120 CYS B 141 1555 1555 2.04 SSBOND 8 CYS B 142 CYS B 145 1555 1555 2.04 SSBOND 9 CYS C 8 CYS C 53 1555 1555 2.04 SSBOND 10 CYS C 109 CYS C 158 1555 1555 2.03 SSBOND 11 CYS C 120 CYS C 141 1555 1555 2.03 SSBOND 12 CYS C 142 CYS C 145 1555 1555 2.03 SSBOND 13 CYS D 8 CYS D 53 1555 1555 2.06 SSBOND 14 CYS D 109 CYS D 158 1555 1555 2.03 SSBOND 15 CYS D 120 CYS D 141 1555 1555 2.04 SSBOND 16 CYS D 142 CYS D 145 1555 1555 2.03 CISPEP 1 VAL A 100 PRO A 101 0 -0.54 CISPEP 2 MET A 147 PRO A 148 0 -6.52 CISPEP 3 VAL B 100 PRO B 101 0 -2.30 CISPEP 4 MET B 147 PRO B 148 0 -10.80 CISPEP 5 VAL C 100 PRO C 101 0 3.78 CISPEP 6 MET C 147 PRO C 148 0 -9.49 CISPEP 7 VAL D 100 PRO D 101 0 1.35 CISPEP 8 MET D 147 PRO D 148 0 -0.82 CRYST1 58.291 114.104 139.215 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007183 0.00000