HEADER SUGAR BINDING PROTEIN 08-DEC-17 5YYB TITLE CRYSTAL STRUCTURE OF SIALIC ACID BINDING PROTEIN FROM HAEMOPHILUS TITLE 2 DUCREYI WITH NEU5GC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS DUCREYI 35000HP; SOURCE 3 ORGANISM_TAXID: 233412; SOURCE 4 STRAIN: 35000HP / ATCC 700724; SOURCE 5 GENE: HD_1669; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS THREE DOMAIN PROTEINS, SIALIC ACID NEU5GC, MOLECULAR MIMICRY, KEYWDS 2 ADHESION, CELL SIGNALING, NUTRITION, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.SUBRAMANIAN,T.G.SETTY REVDAT 3 29-JUL-20 5YYB 1 COMPND REMARK HETNAM SITE REVDAT 3 2 1 ATOM REVDAT 2 16-JAN-19 5YYB 1 JRNL REVDAT 1 24-OCT-18 5YYB 0 JRNL AUTH T.GANGI SETTY,J.C.MOWERS,A.G.HOBBS,S.P.MAIYA,S.SYED, JRNL AUTH 2 R.S.MUNSON JR.,M.A.APICELLA,R.SUBRAMANIAN JRNL TITL MOLECULAR CHARACTERIZATION OF THE INTERACTION OF SIALIC ACID JRNL TITL 2 WITH THE PERIPLASMIC BINDING PROTEIN FROMHAEMOPHILUS JRNL TITL 3 DUCREYI. JRNL REF J. BIOL. CHEM. V. 293 20073 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30315109 JRNL DOI 10.1074/JBC.RA118.005151 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 33071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9948 - 5.6743 0.98 2693 167 0.1333 0.1678 REMARK 3 2 5.6743 - 4.5094 0.99 2707 131 0.1383 0.2145 REMARK 3 3 4.5094 - 3.9409 0.99 2688 129 0.1386 0.2105 REMARK 3 4 3.9409 - 3.5813 0.99 2659 145 0.1619 0.2466 REMARK 3 5 3.5813 - 3.3250 0.99 2643 152 0.1874 0.2758 REMARK 3 6 3.3250 - 3.1292 0.99 2679 146 0.1952 0.2890 REMARK 3 7 3.1292 - 2.9727 0.99 2624 134 0.2127 0.3246 REMARK 3 8 2.9727 - 2.8434 0.98 2645 121 0.2148 0.3161 REMARK 3 9 2.8434 - 2.7340 0.98 2634 165 0.2181 0.3522 REMARK 3 10 2.7340 - 2.6397 0.98 2626 124 0.2186 0.2999 REMARK 3 11 2.6397 - 2.5573 0.98 2647 134 0.2285 0.3115 REMARK 3 12 2.5573 - 2.4842 0.81 2179 99 0.2641 0.3831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7869 REMARK 3 ANGLE : 1.020 10719 REMARK 3 CHIRALITY : 0.052 1202 REMARK 3 PLANARITY : 0.006 1366 REMARK 3 DIHEDRAL : 14.197 4667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778, 0.9546, 0.9783 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 28.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM MES, 60MM NACL, 30% PEG1500 PH REMARK 280 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.20650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.06250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.20650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.06250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 13.67 58.01 REMARK 500 ALA A 55 -92.80 -119.77 REMARK 500 ALA A 103 39.08 70.27 REMARK 500 ASP A 120 -162.49 -172.53 REMARK 500 ASP A 175 -0.73 73.49 REMARK 500 ASP A 176 -90.54 -117.41 REMARK 500 LEU A 202 73.41 -115.71 REMARK 500 LEU A 281 49.38 38.87 REMARK 500 SER A 289 169.08 172.51 REMARK 500 TYR A 307 107.88 -37.53 REMARK 500 ASN A 323 80.72 -159.46 REMARK 500 ARG A 408 -66.95 -126.35 REMARK 500 VAL A 449 57.34 38.14 REMARK 500 THR B 25 20.99 -143.85 REMARK 500 VAL B 48 -62.10 -100.49 REMARK 500 ALA B 55 -98.25 -124.10 REMARK 500 ASP B 121 -6.39 -58.00 REMARK 500 ASN B 122 -15.09 -144.65 REMARK 500 ASP B 175 16.39 58.57 REMARK 500 ASP B 176 -99.37 -126.14 REMARK 500 TYR B 190 55.29 -118.63 REMARK 500 ALA B 219 147.31 171.60 REMARK 500 SER B 222 84.56 45.98 REMARK 500 ASN B 283 49.93 -82.75 REMARK 500 ALA B 286 131.76 -37.76 REMARK 500 SER B 289 -175.01 -177.84 REMARK 500 TYR B 307 116.60 -36.71 REMARK 500 ASP B 308 87.18 -150.92 REMARK 500 ASN B 323 86.67 -164.70 REMARK 500 HIS B 369 -63.15 -127.01 REMARK 500 ASP B 383 78.66 -156.91 REMARK 500 ARG B 408 -70.24 -126.66 REMARK 500 ALA B 412 0.53 -69.40 REMARK 500 PRO B 431 -37.95 -33.73 REMARK 500 VAL B 449 55.92 29.55 REMARK 500 ASP B 470 11.22 80.23 REMARK 500 THR B 477 165.94 -49.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 5YYB A 6 487 UNP Q7VL18 Q7VL18_HAEDU 44 525 DBREF 5YYB B 6 487 UNP Q7VL18 Q7VL18_HAEDU 44 525 SEQRES 1 A 482 GLY SER THR ILE GLU ALA GLY ILE ALA TYR PRO ILE SER SEQRES 2 A 482 THR GLY PHE ASP PRO LEU THR SER SER GLY ALA SER SER SEQRES 3 A 482 MSE ALA ALA ASN LEU HIS ILE PHE GLU GLY LEU VAL ASP SEQRES 4 A 482 LEU HIS PRO VAL THR ARG GLN PRO TYR LEU ALA LEU ALA SEQRES 5 A 482 ALA LYS GLU PRO GLU GLN LYS ASP ASP LEU THR TYR TYR SEQRES 6 A 482 ILE SER LEU ARG GLU GLY ALA MSE PHE HIS ASP GLY SER SEQRES 7 A 482 PRO VAL THR THR GLU ASP VAL VAL TYR SER PHE GLU ARG SEQRES 8 A 482 VAL LEU ASP PRO ALA LYS ALA SER LEU PHE ALA GLN PHE SEQRES 9 A 482 ILE PRO PHE ILE ALA SER VAL THR ALA LEU ASP ASP ASN SEQRES 10 A 482 VAL VAL GLU PHE LYS LEU LYS TYR PRO PHE ALA LEU PHE SEQRES 11 A 482 LYS GLU ARG LEU THR ILE ILE LYS ILE VAL PRO LYS HIS SEQRES 12 A 482 ILE VAL GLU ALA GLY GLN SER ALA PHE ASP ALA LYS PRO SEQRES 13 A 482 ILE GLY SER GLY PRO TYR LYS PHE VAL SER ALA THR LYS SEQRES 14 A 482 ASP ASP ARG ILE VAL PHE GLU ALA ASN THR VAL TYR ASN SEQRES 15 A 482 GLY HIS TYR PRO ALA LYS VAL GLU LYS MSE THR TRP PHE SEQRES 16 A 482 LEU LEU SER ASP ASP ALA ALA ARG VAL THR ALA GLN GLU SEQRES 17 A 482 SER GLY ARG VAL GLN ALA ILE GLU SER VAL PRO TYR LEU SEQRES 18 A 482 ASP ALA GLU ARG LEU LYS ARG LYS ASN ASN VAL GLU SER SEQRES 19 A 482 VAL GLN SER PHE GLY LEU LEU PHE LEU MSE PHE ASN CYS SEQRES 20 A 482 GLU LYS ALA PRO PHE ASP ASN PRO LYS VAL ARG GLN ALA SEQRES 21 A 482 LEU HIS TYR ALA LEU ASP LYS GLN LYS LEU ILE ASP ILE SEQRES 22 A 482 VAL PHE LEU GLY ASN ALA LYS ALA ALA THR SER TYR LEU SEQRES 23 A 482 GLN ASP THR HIS PRO ASP TYR VAL LYS ALA SER SER GLN SEQRES 24 A 482 TYR ASP TYR ASP LYS ALA LYS ALA GLU LYS LEU LEU ALA SEQRES 25 A 482 GLU ALA GLY ILE THR ASN LEU THR PHE GLN LEU LEU ALA SEQRES 26 A 482 THR ASP HIS ALA TRP VAL LYS GLU CYS ALA PRO LEU ILE SEQRES 27 A 482 LEU GLU SER TRP ASN ALA LEU SER VAL VAL LYS VAL THR SEQRES 28 A 482 LEU GLN HIS LEU GLN SER GLY ALA LEU TYR SER ALA HIS SEQRES 29 A 482 VAL ASP LYS GLY ALA TYR GLU VAL VAL ILE ALA PRO GLY SEQRES 30 A 482 ASP PRO SER VAL PHE GLY ASN ASP LEU ASP LEU LEU LEU SEQRES 31 A 482 SER TRP TRP TYR ARG GLY ASP VAL TRP PRO LYS ARG ARG SEQRES 32 A 482 PHE ARG TRP ALA ASN THR ALA GLU TYR HIS GLU VAL GLN SEQRES 33 A 482 LYS LEU LEU ASP GLU ALA ILE LYS ASN PRO ALA GLY SER SEQRES 34 A 482 LYS VAL ALA TRP GLN LYS ALA ILE ASN ILE ILE ALA GLU SEQRES 35 A 482 GLN VAL PRO LEU TYR PRO ILE ILE HIS ARG LYS LEU PRO SEQRES 36 A 482 THR ALA TRP ASN THR LYS LYS LEU THR ASP PHE GLN PRO SEQRES 37 A 482 LEU PRO THR THR GLY LEU SER PHE LEU GLY VAL GLY ARG SEQRES 38 A 482 THR SEQRES 1 B 482 GLY SER THR ILE GLU ALA GLY ILE ALA TYR PRO ILE SER SEQRES 2 B 482 THR GLY PHE ASP PRO LEU THR SER SER GLY ALA SER SER SEQRES 3 B 482 MSE ALA ALA ASN LEU HIS ILE PHE GLU GLY LEU VAL ASP SEQRES 4 B 482 LEU HIS PRO VAL THR ARG GLN PRO TYR LEU ALA LEU ALA SEQRES 5 B 482 ALA LYS GLU PRO GLU GLN LYS ASP ASP LEU THR TYR TYR SEQRES 6 B 482 ILE SER LEU ARG GLU GLY ALA MSE PHE HIS ASP GLY SER SEQRES 7 B 482 PRO VAL THR THR GLU ASP VAL VAL TYR SER PHE GLU ARG SEQRES 8 B 482 VAL LEU ASP PRO ALA LYS ALA SER LEU PHE ALA GLN PHE SEQRES 9 B 482 ILE PRO PHE ILE ALA SER VAL THR ALA LEU ASP ASP ASN SEQRES 10 B 482 VAL VAL GLU PHE LYS LEU LYS TYR PRO PHE ALA LEU PHE SEQRES 11 B 482 LYS GLU ARG LEU THR ILE ILE LYS ILE VAL PRO LYS HIS SEQRES 12 B 482 ILE VAL GLU ALA GLY GLN SER ALA PHE ASP ALA LYS PRO SEQRES 13 B 482 ILE GLY SER GLY PRO TYR LYS PHE VAL SER ALA THR LYS SEQRES 14 B 482 ASP ASP ARG ILE VAL PHE GLU ALA ASN THR VAL TYR ASN SEQRES 15 B 482 GLY HIS TYR PRO ALA LYS VAL GLU LYS MSE THR TRP PHE SEQRES 16 B 482 LEU LEU SER ASP ASP ALA ALA ARG VAL THR ALA GLN GLU SEQRES 17 B 482 SER GLY ARG VAL GLN ALA ILE GLU SER VAL PRO TYR LEU SEQRES 18 B 482 ASP ALA GLU ARG LEU LYS ARG LYS ASN ASN VAL GLU SER SEQRES 19 B 482 VAL GLN SER PHE GLY LEU LEU PHE LEU MSE PHE ASN CYS SEQRES 20 B 482 GLU LYS ALA PRO PHE ASP ASN PRO LYS VAL ARG GLN ALA SEQRES 21 B 482 LEU HIS TYR ALA LEU ASP LYS GLN LYS LEU ILE ASP ILE SEQRES 22 B 482 VAL PHE LEU GLY ASN ALA LYS ALA ALA THR SER TYR LEU SEQRES 23 B 482 GLN ASP THR HIS PRO ASP TYR VAL LYS ALA SER SER GLN SEQRES 24 B 482 TYR ASP TYR ASP LYS ALA LYS ALA GLU LYS LEU LEU ALA SEQRES 25 B 482 GLU ALA GLY ILE THR ASN LEU THR PHE GLN LEU LEU ALA SEQRES 26 B 482 THR ASP HIS ALA TRP VAL LYS GLU CYS ALA PRO LEU ILE SEQRES 27 B 482 LEU GLU SER TRP ASN ALA LEU SER VAL VAL LYS VAL THR SEQRES 28 B 482 LEU GLN HIS LEU GLN SER GLY ALA LEU TYR SER ALA HIS SEQRES 29 B 482 VAL ASP LYS GLY ALA TYR GLU VAL VAL ILE ALA PRO GLY SEQRES 30 B 482 ASP PRO SER VAL PHE GLY ASN ASP LEU ASP LEU LEU LEU SEQRES 31 B 482 SER TRP TRP TYR ARG GLY ASP VAL TRP PRO LYS ARG ARG SEQRES 32 B 482 PHE ARG TRP ALA ASN THR ALA GLU TYR HIS GLU VAL GLN SEQRES 33 B 482 LYS LEU LEU ASP GLU ALA ILE LYS ASN PRO ALA GLY SER SEQRES 34 B 482 LYS VAL ALA TRP GLN LYS ALA ILE ASN ILE ILE ALA GLU SEQRES 35 B 482 GLN VAL PRO LEU TYR PRO ILE ILE HIS ARG LYS LEU PRO SEQRES 36 B 482 THR ALA TRP ASN THR LYS LYS LEU THR ASP PHE GLN PRO SEQRES 37 B 482 LEU PRO THR THR GLY LEU SER PHE LEU GLY VAL GLY ARG SEQRES 38 B 482 THR MODRES 5YYB MSE A 32 MET MODIFIED RESIDUE MODRES 5YYB MSE A 78 MET MODIFIED RESIDUE MODRES 5YYB MSE A 197 MET MODIFIED RESIDUE MODRES 5YYB MSE A 249 MET MODIFIED RESIDUE MODRES 5YYB MSE B 32 MET MODIFIED RESIDUE MODRES 5YYB MSE B 78 MET MODIFIED RESIDUE MODRES 5YYB MSE B 197 MET MODIFIED RESIDUE MODRES 5YYB MSE B 249 MET MODIFIED RESIDUE HET MSE A 32 8 HET MSE A 78 8 HET MSE A 197 8 HET MSE A 249 8 HET MSE B 32 16 HET MSE B 78 8 HET MSE B 197 8 HET MSE B 249 8 HET NGE A 501 40 HET NGE B 501 40 HETNAM MSE SELENOMETHIONINE HETNAM NGE N-GLYCOLYL-BETA-NEURAMINIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NGE 2(C11 H19 N O10) FORMUL 5 HOH *202(H2 O) HELIX 1 AA1 GLY A 28 PHE A 39 1 12 HELIX 2 AA2 THR A 86 ASP A 99 1 14 HELIX 3 AA3 PRO A 100 ALA A 103 5 4 HELIX 4 AA4 PHE A 106 ILE A 110 5 5 HELIX 5 AA5 LEU A 134 LEU A 139 1 6 HELIX 6 AA6 THR A 140 ILE A 142 5 3 HELIX 7 AA7 PRO A 146 GLU A 151 1 6 HELIX 8 AA8 GLY A 153 LYS A 160 1 8 HELIX 9 AA9 ASP A 204 SER A 214 1 11 HELIX 10 AB1 PRO A 224 LEU A 226 5 3 HELIX 11 AB2 ASP A 227 LYS A 232 1 6 HELIX 12 AB3 ASN A 259 ALA A 269 1 11 HELIX 13 AB4 ASP A 271 VAL A 279 1 9 HELIX 14 AB5 ASP A 308 GLY A 320 1 13 HELIX 15 AB6 HIS A 333 LEU A 350 1 18 HELIX 16 AB7 GLN A 361 HIS A 369 1 9 HELIX 17 AB8 ASP A 383 GLY A 388 5 6 HELIX 18 AB9 ASP A 390 ARG A 400 1 11 HELIX 19 AC1 THR A 414 ASN A 430 1 17 HELIX 20 AC2 GLY A 433 VAL A 449 1 17 HELIX 21 AC3 GLY B 28 PHE B 39 1 12 HELIX 22 AC4 THR B 86 ASP B 99 1 14 HELIX 23 AC5 PRO B 100 ALA B 103 5 4 HELIX 24 AC6 PHE B 106 ILE B 110 5 5 HELIX 25 AC7 LEU B 134 LEU B 139 1 6 HELIX 26 AC8 THR B 140 ILE B 142 5 3 HELIX 27 AC9 PRO B 146 GLU B 151 1 6 HELIX 28 AD1 GLY B 153 LYS B 160 1 8 HELIX 29 AD2 ASP B 204 SER B 214 1 11 HELIX 30 AD3 LEU B 226 LEU B 231 1 6 HELIX 31 AD4 LYS B 232 LYS B 234 5 3 HELIX 32 AD5 ASN B 259 ALA B 269 1 11 HELIX 33 AD6 ASP B 271 VAL B 279 1 9 HELIX 34 AD7 ASP B 308 ALA B 319 1 12 HELIX 35 AD8 HIS B 333 ALA B 349 1 17 HELIX 36 AD9 GLN B 361 HIS B 369 1 9 HELIX 37 AE1 ASP B 383 GLY B 388 5 6 HELIX 38 AE2 ASP B 390 ARG B 400 1 11 HELIX 39 AE3 THR B 414 ASN B 430 1 17 HELIX 40 AE4 GLY B 433 VAL B 449 1 17 SHEET 1 AA1 7 TYR A 167 THR A 173 0 SHEET 2 AA1 7 ARG A 177 ALA A 182 -1 O GLU A 181 N LYS A 168 SHEET 3 AA1 7 LYS A 196 LEU A 201 -1 O TRP A 199 N ILE A 178 SHEET 4 AA1 7 THR A 8 ILE A 13 1 N ILE A 13 O PHE A 200 SHEET 5 AA1 7 ALA A 219 ILE A 220 1 O ALA A 219 N GLY A 12 SHEET 6 AA1 7 LEU A 451 TRP A 463 -1 O ALA A 462 N ILE A 220 SHEET 7 AA1 7 ALA A 284 ALA A 286 -1 N LYS A 285 O HIS A 456 SHEET 1 AA210 TYR A 167 THR A 173 0 SHEET 2 AA210 ARG A 177 ALA A 182 -1 O GLU A 181 N LYS A 168 SHEET 3 AA210 LYS A 196 LEU A 201 -1 O TRP A 199 N ILE A 178 SHEET 4 AA210 THR A 8 ILE A 13 1 N ILE A 13 O PHE A 200 SHEET 5 AA210 ALA A 219 ILE A 220 1 O ALA A 219 N GLY A 12 SHEET 6 AA210 LEU A 451 TRP A 463 -1 O ALA A 462 N ILE A 220 SHEET 7 AA210 ASN A 236 PHE A 250 -1 N LEU A 246 O ILE A 454 SHEET 8 AA210 VAL A 377 GLY A 382 -1 O VAL A 378 N MSE A 249 SHEET 9 AA210 LEU A 324 THR A 331 1 N LEU A 329 O VAL A 377 SHEET 10 AA210 VAL A 353 LEU A 360 1 O THR A 356 N LEU A 328 SHEET 1 AA3 2 VAL A 43 LEU A 45 0 SHEET 2 AA3 2 PRO A 52 LEU A 54 -1 O TYR A 53 N ASP A 44 SHEET 1 AA4 4 GLU A 62 ASP A 65 0 SHEET 2 AA4 4 THR A 68 SER A 72 -1 O TYR A 70 N GLU A 62 SHEET 3 AA4 4 VAL A 123 LEU A 128 -1 O PHE A 126 N TYR A 69 SHEET 4 AA4 4 ILE A 113 ALA A 118 -1 N THR A 117 O GLU A 125 SHEET 1 AA5 2 LEU A 468 THR A 469 0 SHEET 2 AA5 2 GLY A 485 ARG A 486 -1 O GLY A 485 N THR A 469 SHEET 1 AA6 4 ILE B 9 ILE B 13 0 SHEET 2 AA6 4 LYS B 196 LEU B 201 1 O PHE B 200 N ALA B 11 SHEET 3 AA6 4 ARG B 177 ALA B 182 -1 N ILE B 178 O TRP B 199 SHEET 4 AA6 4 TYR B 167 ALA B 172 -1 N LYS B 168 O GLU B 181 SHEET 1 AA7 2 VAL B 43 LEU B 45 0 SHEET 2 AA7 2 PRO B 52 LEU B 54 -1 O TYR B 53 N ASP B 44 SHEET 1 AA8 4 GLU B 62 GLN B 63 0 SHEET 2 AA8 4 THR B 68 SER B 72 -1 O TYR B 70 N GLU B 62 SHEET 3 AA8 4 VAL B 123 LEU B 128 -1 O PHE B 126 N TYR B 69 SHEET 4 AA8 4 ILE B 113 ALA B 118 -1 N THR B 117 O GLU B 125 SHEET 1 AA9 3 ALA B 219 ILE B 220 0 SHEET 2 AA9 3 LEU B 459 TRP B 463 -1 O ALA B 462 N ILE B 220 SHEET 3 AA9 3 ASN B 236 VAL B 240 -1 N VAL B 240 O LEU B 459 SHEET 1 AB1 6 ALA B 284 ALA B 286 0 SHEET 2 AB1 6 LEU B 451 ARG B 457 -1 O HIS B 456 N LYS B 285 SHEET 3 AB1 6 LEU B 245 PHE B 250 -1 N LEU B 246 O ILE B 454 SHEET 4 AB1 6 VAL B 377 GLY B 382 -1 O VAL B 378 N MSE B 249 SHEET 5 AB1 6 LEU B 324 THR B 331 1 N LEU B 329 O VAL B 377 SHEET 6 AB1 6 VAL B 353 LEU B 360 1 O THR B 356 N LEU B 328 SHEET 1 AB2 2 LEU B 468 THR B 469 0 SHEET 2 AB2 2 GLY B 485 ARG B 486 -1 O GLY B 485 N THR B 469 LINK C SER A 31 N MSE A 32 1555 1555 1.34 LINK C MSE A 32 N ALA A 33 1555 1555 1.33 LINK C ALA A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N PHE A 79 1555 1555 1.34 LINK C LYS A 196 N MSE A 197 1555 1555 1.32 LINK C MSE A 197 N THR A 198 1555 1555 1.33 LINK C LEU A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N PHE A 250 1555 1555 1.34 LINK C SER B 31 N AMSE B 32 1555 1555 1.33 LINK C SER B 31 N BMSE B 32 1555 1555 1.33 LINK C AMSE B 32 N ALA B 33 1555 1555 1.34 LINK C BMSE B 32 N ALA B 33 1555 1555 1.34 LINK C ALA B 77 N MSE B 78 1555 1555 1.32 LINK C MSE B 78 N PHE B 79 1555 1555 1.33 LINK C LYS B 196 N MSE B 197 1555 1555 1.33 LINK C MSE B 197 N THR B 198 1555 1555 1.33 LINK C LEU B 248 N MSE B 249 1555 1555 1.32 LINK C MSE B 249 N PHE B 250 1555 1555 1.32 CISPEP 1 ALA A 255 PRO A 256 0 0.93 CISPEP 2 ALA B 255 PRO B 256 0 0.98 CRYST1 134.413 70.125 113.081 90.00 114.24 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007440 0.000000 0.003350 0.00000 SCALE2 0.000000 0.014260 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009698 0.00000