HEADER METAL TRANSPORT 12-DEC-17 5YZ2 TITLE THE CYSTATHIONINE-BETA-SYNTHASE (CBS) DOMAIN OF MAGNESIUM AND COBALT TITLE 2 EFFLUX PROTEIN CORC IN COMPLEX WITH BOTH C2'- AND C3'-ENDO AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNESIUM AND COBALT EFFLUX PROTEIN CORC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYSTATHIONINE-BETA-SYNTHASE (CBS) DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CORC, YBEX, B0658, JW0655; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS CYSTATHIONINE-BETA-SYNTHASE (CBS) DOMAIN, MAGNESIUM AND COBALT EFFLUX KEYWDS 2 PROTEIN, AMP BINDING, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.FENG,C.QI,D.F.LI,D.C.WANG REVDAT 2 22-NOV-23 5YZ2 1 REMARK REVDAT 1 30-MAY-18 5YZ2 0 JRNL AUTH N.FENG,C.QI,Y.J.HOU,Y.ZHANG,D.C.WANG,D.F.LI JRNL TITL THE C2'- AND C3'-ENDO EQUILIBRIUM FOR AMP MOLECULES BOUND IN JRNL TITL 2 THE CYSTATHIONINE-BETA-SYNTHASE DOMAIN. JRNL REF BIOCHEM. BIOPHYS. RES. V. 497 646 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29453981 JRNL DOI 10.1016/J.BBRC.2018.02.124 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9733 - 4.2170 0.99 2041 153 0.1906 0.2164 REMARK 3 2 4.2170 - 3.3474 1.00 2012 138 0.1826 0.2146 REMARK 3 3 3.3474 - 2.9243 0.99 1995 139 0.2073 0.2331 REMARK 3 4 2.9243 - 2.6569 0.99 2001 144 0.2228 0.2551 REMARK 3 5 2.6569 - 2.4665 1.00 1972 137 0.2264 0.2136 REMARK 3 6 2.4665 - 2.3211 1.00 2003 145 0.2248 0.2825 REMARK 3 7 2.3211 - 2.2048 1.00 2003 143 0.2329 0.2170 REMARK 3 8 2.2048 - 2.1089 1.00 1947 142 0.2212 0.2431 REMARK 3 9 2.1089 - 2.0277 1.00 1988 141 0.2302 0.2537 REMARK 3 10 2.0277 - 1.9577 1.00 1990 150 0.2323 0.2707 REMARK 3 11 1.9577 - 1.8965 1.00 1979 137 0.2494 0.3257 REMARK 3 12 1.8965 - 1.8423 1.00 1993 143 0.2567 0.3098 REMARK 3 13 1.8423 - 1.7938 1.00 1965 145 0.2755 0.3086 REMARK 3 14 1.7938 - 1.7500 0.97 1908 139 0.2899 0.3348 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2217 REMARK 3 ANGLE : 0.759 2987 REMARK 3 CHIRALITY : 0.048 349 REMARK 3 PLANARITY : 0.004 378 REMARK 3 DIHEDRAL : 12.931 1383 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.5028 10.4561 6.3374 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.4130 REMARK 3 T33: 0.5565 T12: 0.0107 REMARK 3 T13: 0.0344 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.0745 L22: 0.0236 REMARK 3 L33: 0.0395 L12: -0.0417 REMARK 3 L13: 0.0353 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: 0.3118 S13: -0.4833 REMARK 3 S21: -0.2196 S22: 0.0488 S23: -0.9331 REMARK 3 S31: 0.3725 S32: 0.5440 S33: -0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4091 15.1180 -0.9422 REMARK 3 T TENSOR REMARK 3 T11: 0.3439 T22: 0.2629 REMARK 3 T33: 0.2688 T12: 0.0389 REMARK 3 T13: 0.0020 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 1.6291 L22: 0.7723 REMARK 3 L33: 1.6934 L12: 0.2124 REMARK 3 L13: 0.7844 L23: -0.4230 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.3686 S13: 0.2122 REMARK 3 S21: -0.2898 S22: 0.1003 S23: 0.0219 REMARK 3 S31: -0.4087 S32: -0.1198 S33: 0.0024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8434 14.7772 7.1833 REMARK 3 T TENSOR REMARK 3 T11: 0.2900 T22: 0.2688 REMARK 3 T33: 0.2626 T12: -0.0021 REMARK 3 T13: 0.0310 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 1.1836 L22: 0.6001 REMARK 3 L33: 0.9527 L12: 0.4506 REMARK 3 L13: 0.3446 L23: 0.5593 REMARK 3 S TENSOR REMARK 3 S11: -0.2000 S12: -0.0155 S13: -0.1246 REMARK 3 S21: -0.0848 S22: -0.0363 S23: -0.1665 REMARK 3 S31: -0.1261 S32: 0.1553 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1698 6.0201 33.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.5875 T22: 0.8060 REMARK 3 T33: 0.6724 T12: -0.1568 REMARK 3 T13: -0.1183 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 0.2592 L22: 0.0416 REMARK 3 L33: 0.0046 L12: 0.0394 REMARK 3 L13: 0.0222 L23: -0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: -0.5016 S13: 0.0864 REMARK 3 S21: 0.0739 S22: 0.2411 S23: -0.4646 REMARK 3 S31: 0.2106 S32: 0.9562 S33: 0.0138 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6017 12.2979 33.4290 REMARK 3 T TENSOR REMARK 3 T11: 0.4679 T22: 0.3893 REMARK 3 T33: 0.3453 T12: -0.1035 REMARK 3 T13: -0.0208 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.1539 L22: 0.2381 REMARK 3 L33: 0.1394 L12: 0.0087 REMARK 3 L13: 0.0809 L23: -0.0435 REMARK 3 S TENSOR REMARK 3 S11: -0.2097 S12: -0.3978 S13: 0.4756 REMARK 3 S21: 1.0460 S22: -0.1175 S23: 0.0356 REMARK 3 S31: -0.6855 S32: -0.1349 S33: -0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6404 11.5461 23.8159 REMARK 3 T TENSOR REMARK 3 T11: 0.3541 T22: 0.4305 REMARK 3 T33: 0.4525 T12: -0.0530 REMARK 3 T13: -0.0403 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 0.0866 L22: 0.0891 REMARK 3 L33: 0.0045 L12: 0.0719 REMARK 3 L13: 0.0266 L23: -0.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.2958 S12: -0.0416 S13: 0.1158 REMARK 3 S21: 0.0647 S22: -0.2016 S23: 0.2343 REMARK 3 S31: 0.5538 S32: -0.7866 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3260 13.0637 22.1711 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.3276 REMARK 3 T33: 0.3846 T12: 0.0356 REMARK 3 T13: 0.0508 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.6298 L22: 0.8388 REMARK 3 L33: 0.5078 L12: -0.0509 REMARK 3 L13: 0.2399 L23: 0.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1909 S12: -0.2708 S13: 0.6545 REMARK 3 S21: 0.7494 S22: -0.2200 S23: 0.0992 REMARK 3 S31: -0.3427 S32: -0.3207 S33: -0.0019 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3095 6.5347 14.2278 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.3369 REMARK 3 T33: 0.3012 T12: 0.0191 REMARK 3 T13: -0.0108 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.0601 L22: 0.0319 REMARK 3 L33: 0.0919 L12: -0.1219 REMARK 3 L13: 0.1316 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: 0.0801 S12: 0.1465 S13: 0.0722 REMARK 3 S21: 0.1415 S22: -0.3132 S23: -0.0129 REMARK 3 S31: 0.1882 S32: 0.1835 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0070 2.7361 18.9051 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.3598 REMARK 3 T33: 0.3351 T12: 0.0054 REMARK 3 T13: -0.0693 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4493 L22: 0.7232 REMARK 3 L33: 0.8191 L12: 0.3500 REMARK 3 L13: -0.7091 L23: -0.6912 REMARK 3 S TENSOR REMARK 3 S11: -0.1551 S12: 0.4348 S13: 0.1279 REMARK 3 S21: 0.0264 S22: -0.0610 S23: 0.1051 REMARK 3 S31: -0.0479 S32: -0.0338 S33: -0.0203 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2230 1.2502 27.8048 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.3150 REMARK 3 T33: 0.2708 T12: -0.0046 REMARK 3 T13: 0.0177 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 0.4965 L22: 0.9543 REMARK 3 L33: 0.3545 L12: -0.4981 REMARK 3 L13: -0.0175 L23: -0.2068 REMARK 3 S TENSOR REMARK 3 S11: -0.1626 S12: -0.1303 S13: -0.4013 REMARK 3 S21: 0.0794 S22: -0.2434 S23: 0.0512 REMARK 3 S31: 0.0846 S32: 0.0397 S33: -0.0119 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0005 13.4474 25.0442 REMARK 3 T TENSOR REMARK 3 T11: 0.3296 T22: 0.2831 REMARK 3 T33: 0.4093 T12: -0.0227 REMARK 3 T13: -0.0066 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2297 L22: 0.3720 REMARK 3 L33: 0.3908 L12: 0.1487 REMARK 3 L13: -0.4254 L23: 0.3033 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0116 S13: 0.4836 REMARK 3 S21: 0.0831 S22: 0.1768 S23: -0.0463 REMARK 3 S31: 0.0114 S32: -0.2434 S33: 0.0278 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5YZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300004894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9777 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4HG0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH5.5, 25% PEG 3350, REMARK 280 0.2M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 62 REMARK 465 LYS A 194 REMARK 465 GLY A 195 REMARK 465 GLN A 196 REMARK 465 PHE A 197 REMARK 465 LEU A 198 REMARK 465 GLU A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 MET B 62 REMARK 465 GLU B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 460 O HOH B 467 1.88 REMARK 500 O HOH B 454 O HOH B 475 1.93 REMARK 500 O HOH A 437 O HOH A 466 1.97 REMARK 500 O GLU A 131 O HOH A 401 1.97 REMARK 500 NH1 ARG A 70 O HOH A 402 1.98 REMARK 500 O HOH A 466 O HOH A 467 2.04 REMARK 500 OD1 ASN A 85 O HOH A 403 2.07 REMARK 500 O SER A 107 O HOH A 404 2.09 REMARK 500 NH2 ARG A 127 O HOH A 405 2.13 REMARK 500 NH2 ARG B 84 OD1 ASP B 136 2.13 REMARK 500 O HOH A 471 O HOH A 475 2.15 REMARK 500 NH2 ARG B 68 O HOH B 401 2.17 REMARK 500 O GLU B 131 O HOH B 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 107 -91.85 -111.54 REMARK 500 GLU B 108 -44.03 83.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 301 DBREF 5YZ2 A 67 193 UNP P0AE78 CORC_ECOLI 67 193 DBREF 5YZ2 B 67 193 UNP P0AE78 CORC_ECOLI 67 193 SEQADV 5YZ2 MET A 62 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLU A 63 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU A 64 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 ALA A 65 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU A 66 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LYS A 194 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLY A 195 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLN A 196 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 PHE A 197 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU A 198 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLU A 199 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 200 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 201 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 202 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 203 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 204 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS A 205 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 MET B 62 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLU B 63 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU B 64 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 ALA B 65 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU B 66 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LYS B 194 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLY B 195 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLN B 196 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 PHE B 197 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 LEU B 198 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 GLU B 199 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 200 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 201 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 202 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 203 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 204 UNP P0AE78 EXPRESSION TAG SEQADV 5YZ2 HIS B 205 UNP P0AE78 EXPRESSION TAG SEQRES 1 A 144 MET GLU LEU ALA LEU GLN ARG VAL ARG ASP ILE MET ILE SEQRES 2 A 144 PRO ARG SER GLN MET ILE THR LEU LYS ARG ASN GLN THR SEQRES 3 A 144 LEU ASP GLU CYS LEU ASP VAL ILE ILE GLU SER ALA HIS SEQRES 4 A 144 SER ARG PHE PRO VAL ILE SER GLU ASP LYS ASP HIS ILE SEQRES 5 A 144 GLU GLY ILE LEU MET ALA LYS ASP LEU LEU PRO PHE MET SEQRES 6 A 144 ARG SER ASP ALA GLU ALA PHE SER MET ASP LYS VAL LEU SEQRES 7 A 144 ARG GLN ALA VAL VAL VAL PRO GLU SER LYS ARG VAL ASP SEQRES 8 A 144 ARG MET LEU LYS GLU PHE ARG SER GLN ARG TYR HIS MET SEQRES 9 A 144 ALA ILE VAL ILE ASP GLU PHE GLY GLY VAL SER GLY LEU SEQRES 10 A 144 VAL THR ILE GLU ASP ILE LEU GLU LEU ILE VAL GLY GLU SEQRES 11 A 144 ILE GLU LYS GLY GLN PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 12 A 144 HIS SEQRES 1 B 144 MET GLU LEU ALA LEU GLN ARG VAL ARG ASP ILE MET ILE SEQRES 2 B 144 PRO ARG SER GLN MET ILE THR LEU LYS ARG ASN GLN THR SEQRES 3 B 144 LEU ASP GLU CYS LEU ASP VAL ILE ILE GLU SER ALA HIS SEQRES 4 B 144 SER ARG PHE PRO VAL ILE SER GLU ASP LYS ASP HIS ILE SEQRES 5 B 144 GLU GLY ILE LEU MET ALA LYS ASP LEU LEU PRO PHE MET SEQRES 6 B 144 ARG SER ASP ALA GLU ALA PHE SER MET ASP LYS VAL LEU SEQRES 7 B 144 ARG GLN ALA VAL VAL VAL PRO GLU SER LYS ARG VAL ASP SEQRES 8 B 144 ARG MET LEU LYS GLU PHE ARG SER GLN ARG TYR HIS MET SEQRES 9 B 144 ALA ILE VAL ILE ASP GLU PHE GLY GLY VAL SER GLY LEU SEQRES 10 B 144 VAL THR ILE GLU ASP ILE LEU GLU LEU ILE VAL GLY GLU SEQRES 11 B 144 ILE GLU LYS GLY GLN PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 12 B 144 HIS HET AMP A 301 35 HET AMP B 301 35 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 5 HOH *155(H2 O) HELIX 1 AA1 GLU A 63 GLN A 67 5 5 HELIX 2 AA2 ARG A 68 MET A 73 1 6 HELIX 3 AA3 SER A 77 MET A 79 5 3 HELIX 4 AA4 THR A 87 ALA A 99 1 13 HELIX 5 AA5 LYS A 120 ARG A 127 5 8 HELIX 6 AA6 SER A 134 LEU A 139 1 6 HELIX 7 AA7 ARG A 150 ARG A 162 1 13 HELIX 8 AA8 ILE A 181 GLU A 193 1 13 HELIX 9 AA9 GLU B 63 GLN B 67 5 5 HELIX 10 AB1 ARG B 68 MET B 73 1 6 HELIX 11 AB2 SER B 77 MET B 79 5 3 HELIX 12 AB3 THR B 87 ALA B 99 1 13 HELIX 13 AB4 LYS B 120 ARG B 127 5 8 HELIX 14 AB5 SER B 134 LEU B 139 1 6 HELIX 15 AB6 ARG B 150 ARG B 162 1 13 HELIX 16 AB7 ILE B 181 LEU B 198 1 18 SHEET 1 AA1 4 ILE A 74 PRO A 75 0 SHEET 2 AA1 4 VAL A 175 THR A 180 -1 O LEU A 178 N ILE A 74 SHEET 3 AA1 4 MET A 165 ILE A 169 -1 N VAL A 168 O SER A 176 SHEET 4 AA1 4 VAL A 144 PRO A 146 1 N VAL A 145 O ILE A 167 SHEET 1 AA2 3 LEU A 82 LYS A 83 0 SHEET 2 AA2 3 ARG A 102 ILE A 106 1 O ILE A 106 N LEU A 82 SHEET 3 AA2 3 ILE A 113 MET A 118 -1 O GLU A 114 N VAL A 105 SHEET 1 AA3 4 ILE B 74 PRO B 75 0 SHEET 2 AA3 4 VAL B 175 THR B 180 -1 O LEU B 178 N ILE B 74 SHEET 3 AA3 4 MET B 165 ILE B 169 -1 N ALA B 166 O VAL B 179 SHEET 4 AA3 4 VAL B 144 PRO B 146 1 N VAL B 145 O ILE B 167 SHEET 1 AA4 3 LEU B 82 LYS B 83 0 SHEET 2 AA4 3 ARG B 102 ILE B 106 1 O ILE B 106 N LEU B 82 SHEET 3 AA4 3 ILE B 113 MET B 118 -1 O GLU B 114 N VAL B 105 SITE 1 AC1 12 GLN A 78 ILE A 80 HIS A 100 ARG A 102 SITE 2 AC1 12 MET A 165 THR A 180 ASP A 183 HOH A 413 SITE 3 AC1 12 HOH A 429 HOH A 443 HOH A 445 HOH A 452 SITE 1 AC2 13 ILE B 74 GLN B 78 ILE B 80 HIS B 100 SITE 2 AC2 13 SER B 101 ARG B 102 MET B 165 THR B 180 SITE 3 AC2 13 GLU B 182 ASP B 183 HOH B 409 HOH B 417 SITE 4 AC2 13 HOH B 444 CRYST1 53.898 56.290 54.349 90.00 114.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018554 0.000000 0.008546 0.00000 SCALE2 0.000000 0.017765 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020258 0.00000