data_5YZE
#
_entry.id 5YZE
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5YZE pdb_00005yze 10.2210/pdb5yze/pdb
WWPDB D_1300006165 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2018-10-17
2 'Structure model' 2 0 2020-07-29
3 'Structure model' 3 0 2021-01-20
4 'Structure model' 3 1 2024-03-27
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' Advisory
2 2 'Structure model' 'Atomic model'
3 2 'Structure model' 'Data collection'
4 2 'Structure model' 'Derived calculations'
5 2 'Structure model' 'Structure summary'
6 3 'Structure model' 'Derived calculations'
7 3 'Structure model' 'Polymer sequence'
8 3 'Structure model' 'Structure summary'
9 4 'Structure model' 'Data collection'
10 4 'Structure model' 'Database references'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' atom_site
2 2 'Structure model' atom_site_anisotrop
3 2 'Structure model' chem_comp
4 2 'Structure model' entity
5 2 'Structure model' pdbx_branch_scheme
6 2 'Structure model' pdbx_chem_comp_identifier
7 2 'Structure model' pdbx_entity_branch
8 2 'Structure model' pdbx_entity_branch_descriptor
9 2 'Structure model' pdbx_entity_branch_link
10 2 'Structure model' pdbx_entity_branch_list
11 2 'Structure model' pdbx_entity_nonpoly
12 2 'Structure model' pdbx_nonpoly_scheme
13 2 'Structure model' pdbx_struct_assembly_gen
14 2 'Structure model' pdbx_struct_conn_angle
15 2 'Structure model' pdbx_validate_close_contact
16 2 'Structure model' struct_asym
17 2 'Structure model' struct_conn
18 2 'Structure model' struct_conn_type
19 2 'Structure model' struct_site
20 2 'Structure model' struct_site_gen
21 3 'Structure model' chem_comp
22 3 'Structure model' entity_poly
23 3 'Structure model' struct_conn
24 4 'Structure model' chem_comp_atom
25 4 'Structure model' chem_comp_bond
26 4 'Structure model' database_2
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_atom_site.B_iso_or_equiv'
2 2 'Structure model' '_atom_site.Cartn_x'
3 2 'Structure model' '_atom_site.Cartn_y'
4 2 'Structure model' '_atom_site.Cartn_z'
5 2 'Structure model' '_atom_site.auth_asym_id'
6 2 'Structure model' '_atom_site.auth_atom_id'
7 2 'Structure model' '_atom_site.auth_comp_id'
8 2 'Structure model' '_atom_site.auth_seq_id'
9 2 'Structure model' '_atom_site.label_asym_id'
10 2 'Structure model' '_atom_site.label_atom_id'
11 2 'Structure model' '_atom_site.label_comp_id'
12 2 'Structure model' '_atom_site.label_entity_id'
13 2 'Structure model' '_atom_site.type_symbol'
14 2 'Structure model' '_atom_site_anisotrop.U[1][1]'
15 2 'Structure model' '_atom_site_anisotrop.U[1][2]'
16 2 'Structure model' '_atom_site_anisotrop.U[1][3]'
17 2 'Structure model' '_atom_site_anisotrop.U[2][2]'
18 2 'Structure model' '_atom_site_anisotrop.U[2][3]'
19 2 'Structure model' '_atom_site_anisotrop.U[3][3]'
20 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
21 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id'
22 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id'
23 2 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
24 2 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
25 2 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id'
26 2 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id'
27 2 'Structure model' '_atom_site_anisotrop.type_symbol'
28 2 'Structure model' '_chem_comp.mon_nstd_flag'
29 2 'Structure model' '_chem_comp.name'
30 2 'Structure model' '_chem_comp.type'
31 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
32 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
33 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
34 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
35 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
36 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
37 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
38 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
39 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id'
40 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
41 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
42 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
43 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
44 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
45 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
46 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
47 2 'Structure model' '_pdbx_struct_conn_angle.value'
48 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1'
49 2 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2'
50 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1'
51 2 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2'
52 2 'Structure model' '_struct_conn.conn_type_id'
53 2 'Structure model' '_struct_conn.id'
54 2 'Structure model' '_struct_conn.pdbx_dist_value'
55 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
56 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
57 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
58 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
59 2 'Structure model' '_struct_conn.ptnr1_label_asym_id'
60 2 'Structure model' '_struct_conn.ptnr1_label_atom_id'
61 2 'Structure model' '_struct_conn.ptnr1_label_comp_id'
62 2 'Structure model' '_struct_conn.ptnr1_label_seq_id'
63 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
64 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
65 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
66 2 'Structure model' '_struct_conn.ptnr2_label_asym_id'
67 2 'Structure model' '_struct_conn.ptnr2_label_atom_id'
68 2 'Structure model' '_struct_conn.ptnr2_label_comp_id'
69 2 'Structure model' '_struct_conn_type.id'
70 3 'Structure model' '_chem_comp.pdbx_synonyms'
71 3 'Structure model' '_entity_poly.type'
72 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
73 4 'Structure model' '_database_2.pdbx_DOI'
74 4 'Structure model' '_database_2.pdbx_database_accession'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5YZE
_pdbx_database_status.recvd_initial_deposition_date 2017-12-14
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Hou, M.H.' 1 ?
'Chen, Y.W.' 2 ?
'Wu, P.C.' 3 ?
'Satange, R.B.' 4 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country CH
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Int J Mol Sci'
_citation.journal_id_ASTM ?
_citation.journal_id_CSD ?
_citation.journal_id_ISSN 1422-0067
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 19
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title
'CoII(Chromomycin)2 Complex Induces a Conformational Change of CCG Repeats from i-Motif to Base-Extruded DNA Duplex'
_citation.year 2018
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.3390/ijms19092796
_citation.pdbx_database_id_PubMed 30227633
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Chen, Y.W.' 1 ?
primary 'Satange, R.' 2 ?
primary 'Wu, P.C.' 3 ?
primary 'Jhan, C.R.' 4 ?
primary 'Chang, C.K.' 5 ?
primary 'Chung, K.R.' 6 ?
primary 'Waring, M.J.' 7 ?
primary 'Lin, S.W.' 8 ?
primary 'Hsieh, L.C.' 9 ?
primary 'Hou, M.H.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*A)-3')
;
3295.150 2 ? ? ? ?
2 branched man
;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
;
432.506 2 ? ? ? ?
3 branched man
'2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 2 ?
? ? ?
4 non-polymer syn
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410
2 ? ? ? ?
5 non-polymer syn 'COBALT (II) ION' 58.933 3 ? ? ? ?
6 water nat water 18.015 77 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TCCGCCGCCGA
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH
5 'COBALT (II) ION' CO
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DC n
1 3 DC n
1 4 DG n
1 5 DC n
1 6 DC n
1 7 DG n
1 8 DC n
1 9 DC n
1 10 DG n
1 11 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 11
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0
2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ?
3 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 1 CDR C3 H3 2 CDR O1 HO1 sing ?
2 2 2 CDR C3 H3 3 ERI O1 HO1 sing ?
3 3 1 ARI C3 H3 2 1GL O1 HO1 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose
;
'C7 H14 O4' 162.184
ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate'
'[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194
CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158
CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933
CPH non-polymer .
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None
'C21 H24 O9' 420.410
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose
;
'C9 H16 O5' 204.220
HOH non-polymer . WATER ? 'H2 O' 18.015
#
_pdbx_chem_comp_identifier.comp_id 1GL
_pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL'
_pdbx_chem_comp_identifier.program PDB-CARE
_pdbx_chem_comp_identifier.program_version 1.0
_pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT DT A . n
A 1 2 DC 2 2 ? ? ? A . n
A 1 3 DC 3 3 3 DC DC A . n
A 1 4 DG 4 4 4 DG DG A . n
A 1 5 DC 5 5 5 DC DC A . n
A 1 6 DC 6 6 6 DC DC A . n
A 1 7 DG 7 7 7 DG DG A . n
A 1 8 DC 8 8 8 DC DC A . n
A 1 9 DC 9 9 9 DC DC A . n
A 1 10 DG 10 10 10 DG DG A . n
A 1 11 DA 11 11 11 DA DA A . n
B 1 1 DT 1 12 12 DT DT B . n
B 1 2 DC 2 13 ? ? ? B . n
B 1 3 DC 3 14 14 DC DC B . n
B 1 4 DG 4 15 15 DG DG B . n
B 1 5 DC 5 16 16 DC DC B . n
B 1 6 DC 6 17 17 DC DC B . n
B 1 7 DG 7 18 18 DG DG B . n
B 1 8 DC 8 19 19 DC DC B . n
B 1 9 DC 9 20 20 DC DC B . n
B 1 10 DG 10 21 21 DG DG B . n
B 1 11 DA 11 22 22 DA DA B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 2 CDR 1 C CDR 1 A CDR 101 n
C 2 CDR 2 C CDR 2 A CDR 102 n
C 2 ERI 3 C ERI 3 A ERI 103 n
D 3 ARI 1 D ARI 1 A ARI 105 n
D 3 1GL 2 D 1GL 2 A 1GL 104 n
E 3 ARI 1 E ARI 1 B ARI 102 n
E 3 1GL 2 E 1GL 2 B 1GL 101 n
F 2 CDR 1 F CDR 1 B CDR 104 n
F 2 CDR 2 F CDR 2 B CDR 105 n
F 2 ERI 3 F ERI 3 B ERI 106 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CPH 1 106 106 CPH CPH A .
H 5 CO 1 107 107 CO CO A .
I 5 CO 1 108 108 CO CO A .
J 4 CPH 1 103 103 CPH CPH B .
K 5 CO 1 107 107 CO CO B .
L 6 HOH 1 201 201 HOH HOH A .
L 6 HOH 2 202 202 HOH HOH A .
L 6 HOH 3 203 203 HOH HOH A .
L 6 HOH 4 204 204 HOH HOH A .
L 6 HOH 5 205 205 HOH HOH A .
L 6 HOH 6 206 206 HOH HOH A .
L 6 HOH 7 207 207 HOH HOH A .
L 6 HOH 8 208 208 HOH HOH A .
L 6 HOH 9 209 209 HOH HOH A .
L 6 HOH 10 210 210 HOH HOH A .
L 6 HOH 11 211 211 HOH HOH A .
L 6 HOH 12 212 212 HOH HOH A .
L 6 HOH 13 213 213 HOH HOH A .
L 6 HOH 14 214 214 HOH HOH A .
L 6 HOH 15 215 215 HOH HOH A .
L 6 HOH 16 216 216 HOH HOH A .
L 6 HOH 17 217 217 HOH HOH A .
L 6 HOH 18 218 218 HOH HOH A .
L 6 HOH 19 219 219 HOH HOH A .
L 6 HOH 20 220 220 HOH HOH A .
L 6 HOH 21 221 221 HOH HOH A .
L 6 HOH 22 222 222 HOH HOH A .
L 6 HOH 23 223 223 HOH HOH A .
L 6 HOH 24 224 224 HOH HOH A .
L 6 HOH 25 225 225 HOH HOH A .
L 6 HOH 26 226 226 HOH HOH A .
L 6 HOH 27 227 227 HOH HOH A .
L 6 HOH 28 228 228 HOH HOH A .
L 6 HOH 29 229 229 HOH HOH A .
L 6 HOH 30 230 230 HOH HOH A .
L 6 HOH 31 231 231 HOH HOH A .
L 6 HOH 32 232 232 HOH HOH A .
L 6 HOH 33 233 233 HOH HOH A .
L 6 HOH 34 234 234 HOH HOH A .
L 6 HOH 35 235 235 HOH HOH A .
L 6 HOH 36 236 236 HOH HOH A .
L 6 HOH 37 237 237 HOH HOH A .
M 6 HOH 1 201 201 HOH HOH B .
M 6 HOH 2 202 202 HOH HOH B .
M 6 HOH 3 203 203 HOH HOH B .
M 6 HOH 4 204 204 HOH HOH B .
M 6 HOH 5 205 205 HOH HOH B .
M 6 HOH 6 206 206 HOH HOH B .
M 6 HOH 7 207 207 HOH HOH B .
M 6 HOH 8 208 208 HOH HOH B .
M 6 HOH 9 209 209 HOH HOH B .
M 6 HOH 10 210 210 HOH HOH B .
M 6 HOH 11 211 211 HOH HOH B .
M 6 HOH 12 212 212 HOH HOH B .
M 6 HOH 13 213 213 HOH HOH B .
M 6 HOH 14 214 214 HOH HOH B .
M 6 HOH 15 215 215 HOH HOH B .
M 6 HOH 16 216 216 HOH HOH B .
M 6 HOH 17 217 217 HOH HOH B .
M 6 HOH 18 218 218 HOH HOH B .
M 6 HOH 19 219 219 HOH HOH B .
M 6 HOH 20 220 220 HOH HOH B .
M 6 HOH 21 221 221 HOH HOH B .
M 6 HOH 22 222 222 HOH HOH B .
M 6 HOH 23 223 223 HOH HOH B .
M 6 HOH 24 224 224 HOH HOH B .
M 6 HOH 25 225 225 HOH HOH B .
M 6 HOH 26 226 226 HOH HOH B .
M 6 HOH 27 227 227 HOH HOH B .
M 6 HOH 28 228 228 HOH HOH B .
M 6 HOH 29 229 229 HOH HOH B .
M 6 HOH 30 230 230 HOH HOH B .
M 6 HOH 31 231 231 HOH HOH B .
M 6 HOH 32 232 232 HOH HOH B .
M 6 HOH 33 233 233 HOH HOH B .
M 6 HOH 34 234 234 HOH HOH B .
M 6 HOH 35 235 235 HOH HOH B .
M 6 HOH 36 236 236 HOH HOH B .
M 6 HOH 37 237 237 HOH HOH B .
M 6 HOH 38 238 238 HOH HOH B .
M 6 HOH 39 239 239 HOH HOH B .
M 6 HOH 40 240 240 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXDE ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3
? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 4
? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5
#
_cell.entry_id 5YZE
_cell.length_a 46.401
_cell.length_b 46.401
_cell.length_c 73.822
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 12
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5YZE
_symmetry.space_group_name_H-M 'P 32 1 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 153
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5YZE
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.64
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 66.22
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH ?
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 277.15
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
'0.75mM DNA, 1.5mM Chro, 3mM Cobalt, 50mM Sodium Cacodylate (pH= 6.0), 1mM MgCl2, 1% MPD eqillibriated against 30% MPD'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2012-09-18
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.56418
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'NSRRC BEAMLINE BL13B1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.56418
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL13B1
_diffrn_source.pdbx_synchrotron_site NSRRC
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 5YZE
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 27.200
_reflns.d_resolution_high 1.870
_reflns.number_obs 7726
_reflns.number_all ?
_reflns.percent_possible_obs 99.6
_reflns.pdbx_Rmerge_I_obs 0.050
_reflns.pdbx_Rsym_value 0.050
_reflns.pdbx_netI_over_sigmaI 44.5500
_reflns.B_iso_Wilson_estimate 31.27
_reflns.pdbx_redundancy 4.000
_reflns.pdbx_CC_half ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_Rrim_I_all ?
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.87
_reflns_shell.d_res_low 1.94
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs 0.171
_reflns_shell.pdbx_Rsym_value 0.171
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_unique_obs 775
_reflns_shell.pdbx_CC_half ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_Rrim_I_all ?
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 5YZE
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs 7708
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.370
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 27.18
_refine.ls_d_res_high 1.87
_refine.ls_percent_reflns_obs 99.7
_refine.ls_R_factor_obs 0.196
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.194
_refine.ls_R_factor_R_free 0.252
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 4.593
_refine.ls_number_reflns_R_free 354
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 47.48
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii 1.11
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.90
_refine.pdbx_ls_cross_valid_method NONE
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.142
_refine.pdbx_overall_phase_error 30.171
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 398
_refine_hist.pdbx_number_atoms_ligand 169
_refine_hist.number_atoms_solvent 77
_refine_hist.number_atoms_total 644
_refine_hist.d_res_high 1.87
_refine_hist.d_res_low 27.18
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
f_bond_d 0.006 ? ? 622 'X-RAY DIFFRACTION' ?
f_angle_d 1.008 ? ? 914 'X-RAY DIFFRACTION' ?
f_dihedral_angle_d 26.219 ? ? 276 'X-RAY DIFFRACTION' ?
f_chiral_restr 0.050 ? ? 120 'X-RAY DIFFRACTION' ?
f_plane_restr 0.007 ? ? 26 'X-RAY DIFFRACTION' ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_all
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.number_reflns_obs
'X-RAY DIFFRACTION' . 1.8702 2.1407 2420 0.1855 100.00 0.2465 . . 106 . . . .
'X-RAY DIFFRACTION' . 2.1407 2.6967 2442 0.2374 100.00 0.2930 . . 120 . . . .
'X-RAY DIFFRACTION' . 2.6967 27.1866 2492 0.1819 100.00 0.2395 . . 128 . . . .
#
_struct.entry_id 5YZE
_struct.title 'Crystal structure of the [Co2+-(chromomycin A3)2]-d(CCG)3 complex'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5YZE
_struct_keywords.text 'Drug-DNA complex, Chromomycin A3, CCG repeats, i-motif, flipout, DNA, ANTIBIOTICS-DNA complex'
_struct_keywords.pdbx_keywords ANTIBIOTICS/DNA
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
F N N 2 ?
G N N 4 ?
H N N 5 ?
I N N 5 ?
J N N 4 ?
K N N 5 ?
L N N 6 ?
M N N 6 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5YZE
_struct_ref.pdbx_db_accession 5YZE
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5YZE A 1 ? 11 ? 5YZE 1 ? 11 ? 1 11
2 1 5YZE B 1 ? 11 ? 5YZE 12 ? 22 ? 12 22
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 990 ?
1 MORE -20 ?
1 'SSA (A^2)' 4140 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? G CPH . C6 ? ? ? 1_555 D ARI . O1 ? ? A CPH 106 D ARI 1 1_555 ? ? ? ? ? ? ? 1.374 ? ?
covale2 covale one ? G CPH . C2 ? ? ? 1_555 F CDR . O1 ? ? A CPH 106 F CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ?
covale3 covale one ? J CPH . C2 ? ? ? 1_555 C CDR . O1 ? ? B CPH 103 C CDR 1 1_555 ? ? ? ? ? ? ? 1.380 ? ?
covale4 covale one ? J CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? B CPH 103 E ARI 1 1_555 ? ? ? ? ? ? ? 1.377 ? ?
covale5 covale one ? C CDR . C3 ? ? ? 1_555 C CDR . O1 ? ? C CDR 1 C CDR 2 1_555 ? ? ? ? ? ? ? 1.375 ? ?
covale6 covale one ? C CDR . C3 ? ? ? 1_555 C ERI . O1 ? ? C CDR 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale7 covale one ? D ARI . C3 ? ? ? 1_555 D 1GL . O1 ? ? D ARI 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.375 ? ?
covale8 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale9 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale10 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.378 ? ?
metalc1 metalc ? ? A DG 7 N7 ? ? ? 1_555 I CO . CO ? ? A DG 7 A CO 108 1_555 ? ? ? ? ? ? ? 2.194 ? ?
metalc2 metalc ? ? G CPH . O1 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 2.036 ? ?
metalc3 metalc ? ? G CPH . O9 ? ? ? 1_555 H CO . CO ? ? A CPH 106 A CO 107 1_555 ? ? ? ? ? ? ? 1.954 ? ?
metalc4 metalc ? ? H CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 107 A HOH 202 1_555 ? ? ? ? ? ? ? 2.108 ? ?
metalc5 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O9 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.953 ? ?
metalc6 metalc ? ? H CO . CO ? ? ? 1_555 J CPH . O1 ? ? A CO 107 B CPH 103 1_555 ? ? ? ? ? ? ? 2.023 ? ?
metalc7 metalc ? ? H CO . CO ? ? ? 1_555 M HOH . O ? ? A CO 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.078 ? ?
metalc8 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 201 1_555 ? ? ? ? ? ? ? 2.249 ? ?
metalc9 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 203 1_555 ? ? ? ? ? ? ? 2.028 ? ?
metalc10 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 217 1_555 ? ? ? ? ? ? ? 2.199 ? ?
metalc11 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 221 1_555 ? ? ? ? ? ? ? 2.030 ? ?
metalc12 metalc ? ? I CO . CO ? ? ? 1_555 L HOH . O ? ? A CO 108 A HOH 229 1_555 ? ? ? ? ? ? ? 2.192 ? ?
metalc13 metalc ? ? B DG 7 N7 ? ? ? 1_555 K CO . CO ? ? B DG 18 B CO 107 1_555 ? ? ? ? ? ? ? 2.173 ? ?
metalc14 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 202 1_555 ? ? ? ? ? ? ? 2.227 ? ?
metalc15 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 206 1_555 ? ? ? ? ? ? ? 2.019 ? ?
metalc16 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 216 1_555 ? ? ? ? ? ? ? 2.154 ? ?
metalc17 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 220 1_555 ? ? ? ? ? ? ? 1.936 ? ?
metalc18 metalc ? ? K CO . CO ? ? ? 1_555 M HOH . O ? ? B CO 107 B HOH 235 1_555 ? ? ? ? ? ? ? 2.198 ? ?
hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 7 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 8 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 201 ? 1_555 94.4 ?
2 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 93.5 ?
3 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 203 ? 1_555 92.1 ?
4 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 88.7 ?
5 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 171.4 ?
6 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 217 ? 1_555 95.8 ?
7 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 91.1 ?
8 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 86.5 ?
9 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 175.3 ?
10 O ? L HOH . ? A HOH 217 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 221 ? 1_555 85.4 ?
11 N7 ? A DG 7 ? A DG 7 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 175.7 ?
12 O ? L HOH . ? A HOH 201 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 82.9 ?
13 O ? L HOH . ? A HOH 203 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 83.2 ?
14 O ? L HOH . ? A HOH 217 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 94.5 ?
15 O ? L HOH . ? A HOH 221 ? 1_555 CO ? I CO . ? A CO 108 ? 1_555 O ? L HOH . ? A HOH 229 ? 1_555 92.2 ?
16 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? G CPH . ? A CPH 106 ? 1_555 81.2 ?
17 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 94.8 ?
18 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? L HOH . ? A HOH 202 ? 1_555 94.7 ?
19 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 97.4 ?
20 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 178.6 ?
21 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 85.2 ?
22 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.1 ?
23 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 96.9 ?
24 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 167.8 ?
25 O9 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.1 ?
26 O1 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 165.4 ?
27 O9 ? G CPH . ? A CPH 106 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 86.0 ?
28 O ? L HOH . ? A HOH 202 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 93.1 ?
29 O9 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 95.4 ?
30 O1 ? J CPH . ? B CPH 103 ? 1_555 CO ? H CO . ? A CO 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 91.6 ?
31 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 202 ? 1_555 95.8 ?
32 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 206 ? 1_555 93.1 ?
33 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 206 ? 1_555 88.8 ?
34 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 88.7 ?
35 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 175.4 ?
36 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 216 ? 1_555 91.3 ?
37 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 92.4 ?
38 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 90.2 ?
39 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 174.5 ?
40 O ? M HOH . ? B HOH 216 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 220 ? 1_555 89.3 ?
41 N7 ? B DG 7 ? B DG 18 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 175.8 ?
42 O ? M HOH . ? B HOH 202 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 88.2 ?
43 O ? M HOH . ? B HOH 206 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 88.1 ?
44 O ? M HOH . ? B HOH 216 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 87.2 ?
45 O ? M HOH . ? B HOH 220 ? 1_555 CO ? K CO . ? B CO 107 ? 1_555 O ? M HOH . ? B HOH 235 ? 1_555 86.5 ?
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 C4
_pdbx_validate_close_contact.auth_asym_id_1 F
_pdbx_validate_close_contact.auth_comp_id_1 CDR
_pdbx_validate_close_contact.auth_seq_id_1 2
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 O1
_pdbx_validate_close_contact.auth_asym_id_2 F
_pdbx_validate_close_contact.auth_comp_id_2 ERI
_pdbx_validate_close_contact.auth_seq_id_2 3
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.16
#
loop_
_space_group_symop.id
_space_group_symop.operation_xyz
1 x,y,z
2 -y,x-y,z+2/3
3 -x+y,-x,z+1/3
4 -y,-x,-z+1/3
5 -x+y,y,-z+2/3
6 x,x-y,-z
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
'X-RAY DIFFRACTION' 1 ? refined -5.6046 18.0452 7.7904 0.2848 0.2422 0.3881 -0.0020 0.0108 -0.0256 4.0819 9.5702 5.4422 -0.0868
-0.3230 2.4569 0.1027 -0.5846 0.3419 -0.1725 -0.0314 1.3332 -0.1212 0.3643 -0.4439
'X-RAY DIFFRACTION' 2 ? refined -5.6415 8.7299 4.4588 0.3199 0.2330 0.3730 0.0117 -0.0225 -0.0258 4.1510 9.2141 4.6953 0.2600
-0.6464 1.7979 0.2656 -0.5161 0.3668 0.3566 0.1111 1.1762 0.1964 -0.1666 -0.3674
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection_details
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
'X-RAY DIFFRACTION' 1 1 A 1 A 11
;chain 'A' and (resid 1 through 11 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 2 2 B 12 B 22
;chain 'B' and (resid 12 through 22 )
;
? ? ? ? ?
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 236 ? . 6.65
2 1 O ? A HOH 237 ? . 8.48
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A DC 2 ? A DC 2
2 1 Y 1 B DC 13 ? B DC 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1GL O1 O N N 1
1GL C1 C N S 2
1GL C2 C N N 3
1GL C3 C N R 4
1GL O3 O N N 5
1GL C4 C N R 6
1GL O4 O N N 7
1GL CME C N N 8
1GL C5 C N R 9
1GL O5 O N N 10
1GL C6 C N N 11
1GL HO1 H N N 12
1GL H1 H N N 13
1GL H2 H N N 14
1GL H22 H N N 15
1GL H3 H N N 16
1GL HO3 H N N 17
1GL H4 H N N 18
1GL HM41 H N N 19
1GL HM42 H N N 20
1GL HM43 H N N 21
1GL H5 H N N 22
1GL H61 H N N 23
1GL H62 H N N 24
1GL H63 H N N 25
ARI O1 O N N 26
ARI C1 C N R 27
ARI C2 C N N 28
ARI C3 C N N 29
ARI C4 C N R 30
ARI O4 O N N 31
ARI CME C N N 32
ARI CO4 C N N 33
ARI OC4 O N N 34
ARI C5 C N R 35
ARI O5 O N N 36
ARI C6 C N N 37
ARI HO1 H N N 38
ARI H1 H N N 39
ARI H2 H N N 40
ARI H22 H N N 41
ARI H3 H N N 42
ARI H32 H N N 43
ARI H4 H N N 44
ARI H41 H N N 45
ARI H42 H N N 46
ARI H43 H N N 47
ARI H5 H N N 48
ARI H61 H N N 49
ARI H62 H N N 50
ARI H63 H N N 51
CDR O1 O N N 52
CDR C1 C N R 53
CDR C2 C N N 54
CDR C3 C N N 55
CDR C4 C N S 56
CDR O4 O N N 57
CDR C5 C N R 58
CDR O5 O N N 59
CDR C6 C N N 60
CDR HO1 H N N 61
CDR H1 H N N 62
CDR H2 H N N 63
CDR H22 H N N 64
CDR H3 H N N 65
CDR H32 H N N 66
CDR H4 H N N 67
CDR HO4 H N N 68
CDR H5 H N N 69
CDR H61 H N N 70
CDR H62 H N N 71
CDR H63 H N N 72
CO CO CO N N 73
CPH C1 C N N 74
CPH O1 O N N 75
CPH C2 C N S 76
CPH C3 C N R 77
CPH C4 C N N 78
CPH C5 C Y N 79
CPH C6 C Y N 80
CPH C7 C Y N 81
CPH C8 C Y N 82
CPH O8 O N N 83
CPH C9 C Y N 84
CPH O9 O N N 85
CPH "C1'" C N S 86
CPH "O1'" O N N 87
CPH C10 C Y N 88
CPH "C2'" C N N 89
CPH "O2'" O N N 90
CPH "C3'" C N S 91
CPH "O3'" O N N 92
CPH "C4'" C N R 93
CPH "O4'" O N N 94
CPH C4A C Y N 95
CPH "C5'" C N N 96
CPH C5A C Y N 97
CPH C8A C Y N 98
CPH C9A C Y N 99
CPH CC7 C N N 100
CPH O6 O N N 101
CPH O2 O N N 102
CPH CME C N N 103
CPH H2 H N N 104
CPH H3 H N N 105
CPH H4 H N N 106
CPH H4A H N N 107
CPH H5 H N N 108
CPH HO8 H N N 109
CPH HO9 H N N 110
CPH "H1'" H N N 111
CPH H10 H N N 112
CPH "H3'" H N N 113
CPH "HO3'" H N N 114
CPH "H4'" H N N 115
CPH "HO4'" H N N 116
CPH "H5'" H N N 117
CPH "H5'A" H N N 118
CPH "H5'B" H N N 119
CPH HC7 H N N 120
CPH HC7A H N N 121
CPH HC7B H N N 122
CPH HO6 H N N 123
CPH HO2 H N N 124
CPH HME H N N 125
CPH HMEA H N N 126
CPH HMEB H N N 127
DA OP3 O N N 128
DA P P N N 129
DA OP1 O N N 130
DA OP2 O N N 131
DA "O5'" O N N 132
DA "C5'" C N N 133
DA "C4'" C N R 134
DA "O4'" O N N 135
DA "C3'" C N S 136
DA "O3'" O N N 137
DA "C2'" C N N 138
DA "C1'" C N R 139
DA N9 N Y N 140
DA C8 C Y N 141
DA N7 N Y N 142
DA C5 C Y N 143
DA C6 C Y N 144
DA N6 N N N 145
DA N1 N Y N 146
DA C2 C Y N 147
DA N3 N Y N 148
DA C4 C Y N 149
DA HOP3 H N N 150
DA HOP2 H N N 151
DA "H5'" H N N 152
DA "H5''" H N N 153
DA "H4'" H N N 154
DA "H3'" H N N 155
DA "HO3'" H N N 156
DA "H2'" H N N 157
DA "H2''" H N N 158
DA "H1'" H N N 159
DA H8 H N N 160
DA H61 H N N 161
DA H62 H N N 162
DA H2 H N N 163
DC OP3 O N N 164
DC P P N N 165
DC OP1 O N N 166
DC OP2 O N N 167
DC "O5'" O N N 168
DC "C5'" C N N 169
DC "C4'" C N R 170
DC "O4'" O N N 171
DC "C3'" C N S 172
DC "O3'" O N N 173
DC "C2'" C N N 174
DC "C1'" C N R 175
DC N1 N N N 176
DC C2 C N N 177
DC O2 O N N 178
DC N3 N N N 179
DC C4 C N N 180
DC N4 N N N 181
DC C5 C N N 182
DC C6 C N N 183
DC HOP3 H N N 184
DC HOP2 H N N 185
DC "H5'" H N N 186
DC "H5''" H N N 187
DC "H4'" H N N 188
DC "H3'" H N N 189
DC "HO3'" H N N 190
DC "H2'" H N N 191
DC "H2''" H N N 192
DC "H1'" H N N 193
DC H41 H N N 194
DC H42 H N N 195
DC H5 H N N 196
DC H6 H N N 197
DG OP3 O N N 198
DG P P N N 199
DG OP1 O N N 200
DG OP2 O N N 201
DG "O5'" O N N 202
DG "C5'" C N N 203
DG "C4'" C N R 204
DG "O4'" O N N 205
DG "C3'" C N S 206
DG "O3'" O N N 207
DG "C2'" C N N 208
DG "C1'" C N R 209
DG N9 N Y N 210
DG C8 C Y N 211
DG N7 N Y N 212
DG C5 C Y N 213
DG C6 C N N 214
DG O6 O N N 215
DG N1 N N N 216
DG C2 C N N 217
DG N2 N N N 218
DG N3 N N N 219
DG C4 C Y N 220
DG HOP3 H N N 221
DG HOP2 H N N 222
DG "H5'" H N N 223
DG "H5''" H N N 224
DG "H4'" H N N 225
DG "H3'" H N N 226
DG "HO3'" H N N 227
DG "H2'" H N N 228
DG "H2''" H N N 229
DG "H1'" H N N 230
DG H8 H N N 231
DG H1 H N N 232
DG H21 H N N 233
DG H22 H N N 234
DT OP3 O N N 235
DT P P N N 236
DT OP1 O N N 237
DT OP2 O N N 238
DT "O5'" O N N 239
DT "C5'" C N N 240
DT "C4'" C N R 241
DT "O4'" O N N 242
DT "C3'" C N S 243
DT "O3'" O N N 244
DT "C2'" C N N 245
DT "C1'" C N R 246
DT N1 N N N 247
DT C2 C N N 248
DT O2 O N N 249
DT N3 N N N 250
DT C4 C N N 251
DT O4 O N N 252
DT C5 C N N 253
DT C7 C N N 254
DT C6 C N N 255
DT HOP3 H N N 256
DT HOP2 H N N 257
DT "H5'" H N N 258
DT "H5''" H N N 259
DT "H4'" H N N 260
DT "H3'" H N N 261
DT "HO3'" H N N 262
DT "H2'" H N N 263
DT "H2''" H N N 264
DT "H1'" H N N 265
DT H3 H N N 266
DT H71 H N N 267
DT H72 H N N 268
DT H73 H N N 269
DT H6 H N N 270
ERI O1 O N N 271
ERI C1 C N R 272
ERI C2 C N N 273
ERI C3 C N S 274
ERI O3 O N N 275
ERI CC3 C N N 276
ERI C4 C N S 277
ERI O4 O N N 278
ERI CME C N N 279
ERI CO4 C N N 280
ERI OC4 O N N 281
ERI C5 C N S 282
ERI O5 O N N 283
ERI C6 C N N 284
ERI HO1 H N N 285
ERI H1 H N N 286
ERI H21 H N N 287
ERI H22 H N N 288
ERI HO3 H N N 289
ERI H31 H N N 290
ERI H32 H N N 291
ERI H33 H N N 292
ERI H4 H N N 293
ERI H41 H N N 294
ERI H42 H N N 295
ERI H43 H N N 296
ERI H5 H N N 297
ERI H61 H N N 298
ERI H62 H N N 299
ERI H63 H N N 300
HOH O O N N 301
HOH H1 H N N 302
HOH H2 H N N 303
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1GL O1 C1 sing N N 1
1GL O1 HO1 sing N N 2
1GL C1 C2 sing N N 3
1GL C1 O5 sing N N 4
1GL C1 H1 sing N N 5
1GL C2 C3 sing N N 6
1GL C2 H2 sing N N 7
1GL C2 H22 sing N N 8
1GL C3 O3 sing N N 9
1GL C3 C4 sing N N 10
1GL C3 H3 sing N N 11
1GL O3 HO3 sing N N 12
1GL C4 O4 sing N N 13
1GL C4 C5 sing N N 14
1GL C4 H4 sing N N 15
1GL O4 CME sing N N 16
1GL CME HM41 sing N N 17
1GL CME HM42 sing N N 18
1GL CME HM43 sing N N 19
1GL C5 O5 sing N N 20
1GL C5 C6 sing N N 21
1GL C5 H5 sing N N 22
1GL C6 H61 sing N N 23
1GL C6 H62 sing N N 24
1GL C6 H63 sing N N 25
ARI O1 C1 sing N N 26
ARI O1 HO1 sing N N 27
ARI C1 C2 sing N N 28
ARI C1 O5 sing N N 29
ARI C1 H1 sing N N 30
ARI C2 C3 sing N N 31
ARI C2 H2 sing N N 32
ARI C2 H22 sing N N 33
ARI C3 C4 sing N N 34
ARI C3 H3 sing N N 35
ARI C3 H32 sing N N 36
ARI C4 O4 sing N N 37
ARI C4 C5 sing N N 38
ARI C4 H4 sing N N 39
ARI O4 CO4 sing N N 40
ARI CME CO4 sing N N 41
ARI CME H41 sing N N 42
ARI CME H42 sing N N 43
ARI CME H43 sing N N 44
ARI CO4 OC4 doub N N 45
ARI C5 O5 sing N N 46
ARI C5 C6 sing N N 47
ARI C5 H5 sing N N 48
ARI C6 H61 sing N N 49
ARI C6 H62 sing N N 50
ARI C6 H63 sing N N 51
CDR O1 C1 sing N N 52
CDR O1 HO1 sing N N 53
CDR C1 C2 sing N N 54
CDR C1 O5 sing N N 55
CDR C1 H1 sing N N 56
CDR C2 C3 sing N N 57
CDR C2 H2 sing N N 58
CDR C2 H22 sing N N 59
CDR C3 C4 sing N N 60
CDR C3 H3 sing N N 61
CDR C3 H32 sing N N 62
CDR C4 O4 sing N N 63
CDR C4 C5 sing N N 64
CDR C4 H4 sing N N 65
CDR O4 HO4 sing N N 66
CDR C5 O5 sing N N 67
CDR C5 C6 sing N N 68
CDR C5 H5 sing N N 69
CDR C6 H61 sing N N 70
CDR C6 H62 sing N N 71
CDR C6 H63 sing N N 72
CPH O1 C1 doub N N 73
CPH C9A C1 sing N N 74
CPH C1 C2 sing N N 75
CPH C2 O2 sing N N 76
CPH C2 C3 sing N N 77
CPH C2 H2 sing N N 78
CPH C3 C4 sing N N 79
CPH C3 "C1'" sing N N 80
CPH C3 H3 sing N N 81
CPH C4A C4 sing N N 82
CPH C4 H4 sing N N 83
CPH C4 H4A sing N N 84
CPH C6 C5 doub Y N 85
CPH C5 C5A sing Y N 86
CPH C5 H5 sing N N 87
CPH C7 C6 sing Y N 88
CPH O6 C6 sing N N 89
CPH CC7 C7 sing N N 90
CPH C7 C8 doub Y N 91
CPH O8 C8 sing N N 92
CPH C8 C8A sing Y N 93
CPH O8 HO8 sing N N 94
CPH O9 C9 sing N N 95
CPH C8A C9 doub Y N 96
CPH C9 C9A sing Y N 97
CPH O9 HO9 sing N N 98
CPH "C2'" "C1'" sing N N 99
CPH "C1'" "O1'" sing N N 100
CPH "C1'" "H1'" sing N N 101
CPH "O1'" CME sing N N 102
CPH C5A C10 doub Y N 103
CPH C10 C4A sing Y N 104
CPH C10 H10 sing N N 105
CPH "O2'" "C2'" doub N N 106
CPH "C2'" "C3'" sing N N 107
CPH "O3'" "C3'" sing N N 108
CPH "C3'" "C4'" sing N N 109
CPH "C3'" "H3'" sing N N 110
CPH "O3'" "HO3'" sing N N 111
CPH "O4'" "C4'" sing N N 112
CPH "C4'" "C5'" sing N N 113
CPH "C4'" "H4'" sing N N 114
CPH "O4'" "HO4'" sing N N 115
CPH C9A C4A doub Y N 116
CPH "C5'" "H5'" sing N N 117
CPH "C5'" "H5'A" sing N N 118
CPH "C5'" "H5'B" sing N N 119
CPH C8A C5A sing Y N 120
CPH CC7 HC7 sing N N 121
CPH CC7 HC7A sing N N 122
CPH CC7 HC7B sing N N 123
CPH O6 HO6 sing N N 124
CPH O2 HO2 sing N N 125
CPH CME HME sing N N 126
CPH CME HMEA sing N N 127
CPH CME HMEB sing N N 128
DA OP3 P sing N N 129
DA OP3 HOP3 sing N N 130
DA P OP1 doub N N 131
DA P OP2 sing N N 132
DA P "O5'" sing N N 133
DA OP2 HOP2 sing N N 134
DA "O5'" "C5'" sing N N 135
DA "C5'" "C4'" sing N N 136
DA "C5'" "H5'" sing N N 137
DA "C5'" "H5''" sing N N 138
DA "C4'" "O4'" sing N N 139
DA "C4'" "C3'" sing N N 140
DA "C4'" "H4'" sing N N 141
DA "O4'" "C1'" sing N N 142
DA "C3'" "O3'" sing N N 143
DA "C3'" "C2'" sing N N 144
DA "C3'" "H3'" sing N N 145
DA "O3'" "HO3'" sing N N 146
DA "C2'" "C1'" sing N N 147
DA "C2'" "H2'" sing N N 148
DA "C2'" "H2''" sing N N 149
DA "C1'" N9 sing N N 150
DA "C1'" "H1'" sing N N 151
DA N9 C8 sing Y N 152
DA N9 C4 sing Y N 153
DA C8 N7 doub Y N 154
DA C8 H8 sing N N 155
DA N7 C5 sing Y N 156
DA C5 C6 sing Y N 157
DA C5 C4 doub Y N 158
DA C6 N6 sing N N 159
DA C6 N1 doub Y N 160
DA N6 H61 sing N N 161
DA N6 H62 sing N N 162
DA N1 C2 sing Y N 163
DA C2 N3 doub Y N 164
DA C2 H2 sing N N 165
DA N3 C4 sing Y N 166
DC OP3 P sing N N 167
DC OP3 HOP3 sing N N 168
DC P OP1 doub N N 169
DC P OP2 sing N N 170
DC P "O5'" sing N N 171
DC OP2 HOP2 sing N N 172
DC "O5'" "C5'" sing N N 173
DC "C5'" "C4'" sing N N 174
DC "C5'" "H5'" sing N N 175
DC "C5'" "H5''" sing N N 176
DC "C4'" "O4'" sing N N 177
DC "C4'" "C3'" sing N N 178
DC "C4'" "H4'" sing N N 179
DC "O4'" "C1'" sing N N 180
DC "C3'" "O3'" sing N N 181
DC "C3'" "C2'" sing N N 182
DC "C3'" "H3'" sing N N 183
DC "O3'" "HO3'" sing N N 184
DC "C2'" "C1'" sing N N 185
DC "C2'" "H2'" sing N N 186
DC "C2'" "H2''" sing N N 187
DC "C1'" N1 sing N N 188
DC "C1'" "H1'" sing N N 189
DC N1 C2 sing N N 190
DC N1 C6 sing N N 191
DC C2 O2 doub N N 192
DC C2 N3 sing N N 193
DC N3 C4 doub N N 194
DC C4 N4 sing N N 195
DC C4 C5 sing N N 196
DC N4 H41 sing N N 197
DC N4 H42 sing N N 198
DC C5 C6 doub N N 199
DC C5 H5 sing N N 200
DC C6 H6 sing N N 201
DG OP3 P sing N N 202
DG OP3 HOP3 sing N N 203
DG P OP1 doub N N 204
DG P OP2 sing N N 205
DG P "O5'" sing N N 206
DG OP2 HOP2 sing N N 207
DG "O5'" "C5'" sing N N 208
DG "C5'" "C4'" sing N N 209
DG "C5'" "H5'" sing N N 210
DG "C5'" "H5''" sing N N 211
DG "C4'" "O4'" sing N N 212
DG "C4'" "C3'" sing N N 213
DG "C4'" "H4'" sing N N 214
DG "O4'" "C1'" sing N N 215
DG "C3'" "O3'" sing N N 216
DG "C3'" "C2'" sing N N 217
DG "C3'" "H3'" sing N N 218
DG "O3'" "HO3'" sing N N 219
DG "C2'" "C1'" sing N N 220
DG "C2'" "H2'" sing N N 221
DG "C2'" "H2''" sing N N 222
DG "C1'" N9 sing N N 223
DG "C1'" "H1'" sing N N 224
DG N9 C8 sing Y N 225
DG N9 C4 sing Y N 226
DG C8 N7 doub Y N 227
DG C8 H8 sing N N 228
DG N7 C5 sing Y N 229
DG C5 C6 sing N N 230
DG C5 C4 doub Y N 231
DG C6 O6 doub N N 232
DG C6 N1 sing N N 233
DG N1 C2 sing N N 234
DG N1 H1 sing N N 235
DG C2 N2 sing N N 236
DG C2 N3 doub N N 237
DG N2 H21 sing N N 238
DG N2 H22 sing N N 239
DG N3 C4 sing N N 240
DT OP3 P sing N N 241
DT OP3 HOP3 sing N N 242
DT P OP1 doub N N 243
DT P OP2 sing N N 244
DT P "O5'" sing N N 245
DT OP2 HOP2 sing N N 246
DT "O5'" "C5'" sing N N 247
DT "C5'" "C4'" sing N N 248
DT "C5'" "H5'" sing N N 249
DT "C5'" "H5''" sing N N 250
DT "C4'" "O4'" sing N N 251
DT "C4'" "C3'" sing N N 252
DT "C4'" "H4'" sing N N 253
DT "O4'" "C1'" sing N N 254
DT "C3'" "O3'" sing N N 255
DT "C3'" "C2'" sing N N 256
DT "C3'" "H3'" sing N N 257
DT "O3'" "HO3'" sing N N 258
DT "C2'" "C1'" sing N N 259
DT "C2'" "H2'" sing N N 260
DT "C2'" "H2''" sing N N 261
DT "C1'" N1 sing N N 262
DT "C1'" "H1'" sing N N 263
DT N1 C2 sing N N 264
DT N1 C6 sing N N 265
DT C2 O2 doub N N 266
DT C2 N3 sing N N 267
DT N3 C4 sing N N 268
DT N3 H3 sing N N 269
DT C4 O4 doub N N 270
DT C4 C5 sing N N 271
DT C5 C7 sing N N 272
DT C5 C6 doub N N 273
DT C7 H71 sing N N 274
DT C7 H72 sing N N 275
DT C7 H73 sing N N 276
DT C6 H6 sing N N 277
ERI O1 C1 sing N N 278
ERI O1 HO1 sing N N 279
ERI C1 C2 sing N N 280
ERI C1 O5 sing N N 281
ERI C1 H1 sing N N 282
ERI C2 C3 sing N N 283
ERI C2 H21 sing N N 284
ERI C2 H22 sing N N 285
ERI C3 O3 sing N N 286
ERI C3 CC3 sing N N 287
ERI C3 C4 sing N N 288
ERI O3 HO3 sing N N 289
ERI CC3 H31 sing N N 290
ERI CC3 H32 sing N N 291
ERI CC3 H33 sing N N 292
ERI C4 O4 sing N N 293
ERI C4 C5 sing N N 294
ERI C4 H4 sing N N 295
ERI O4 CO4 sing N N 296
ERI CME CO4 sing N N 297
ERI CME H41 sing N N 298
ERI CME H42 sing N N 299
ERI CME H43 sing N N 300
ERI CO4 OC4 doub N N 301
ERI C5 O5 sing N N 302
ERI C5 C6 sing N N 303
ERI C5 H5 sing N N 304
ERI C6 H61 sing N N 305
ERI C6 H62 sing N N 306
ERI C6 H63 sing N N 307
HOH O H1 sing N N 308
HOH O H2 sing N N 309
#
_ndb_struct_conf_na.entry_id 5YZE
_ndb_struct_conf_na.feature 'a-form double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DC 3 1_555 B DG 10 1_555 0.046 -0.133 0.251 2.448 -12.458 -1.906 1 A_DC3:DG21_B A 3 ? B 21 ? 19 1
1 A DG 4 1_555 B DC 9 1_555 -0.141 -0.167 -0.020 -1.984 -11.822 1.051 2 A_DG4:DC20_B A 4 ? B 20 ? 19 1
1 A DG 7 1_555 B DC 8 1_555 -0.466 -0.182 0.196 1.148 -10.009 0.496 3 A_DG7:DC19_B A 7 ? B 19 ? 19 1
1 A DC 8 1_555 B DG 7 1_555 0.401 -0.219 0.242 -1.407 -9.769 0.062 4 A_DC8:DG18_B A 8 ? B 18 ? 19 1
1 A DC 9 1_555 B DG 4 1_555 0.066 -0.224 -0.049 2.249 -13.059 0.484 5 A_DC9:DG15_B A 9 ? B 15 ? 19 1
1 A DG 10 1_555 B DC 3 1_555 -0.322 -0.062 0.241 -5.685 -17.482 2.767 6 A_DG10:DC14_B A 10 ? B 14 ? 19 1
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.859 0.252 3.532 2.966 4.702 37.579 -0.270 -0.906 3.592 7.251 -4.573
37.974 1 AA_DC3DG4:DC20DG21_BB A 3 ? B 21 ? A 4 ? B 20 ?
1 A DG 4 1_555 B DC 9 1_555 A DG 7 1_555 B DC 8 1_555 2.185 -1.945 3.125 -0.944 7.712 18.580 -8.487 -6.610 2.047 22.646 2.772
20.126 2 AA_DG4DG7:DC19DC20_BB A 4 ? B 20 ? A 7 ? B 19 ?
1 A DG 7 1_555 B DC 8 1_555 A DC 8 1_555 B DG 7 1_555 0.019 -2.151 3.288 -0.029 0.200 37.542 -3.369 -0.033 3.277 0.311 0.045
37.542 3 AA_DG7DC8:DG18DC19_BB A 7 ? B 19 ? A 8 ? B 18 ?
1 A DC 8 1_555 B DG 7 1_555 A DC 9 1_555 B DG 4 1_555 -2.166 -1.977 3.103 1.222 7.929 18.455 -8.608 6.657 1.947 23.345 -3.599
20.109 4 AA_DC8DC9:DG15DG18_BB A 8 ? B 18 ? A 9 ? B 15 ?
1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -0.787 0.283 3.568 -2.059 6.760 36.087 -0.570 0.938 3.599 10.785 3.284
36.750 5 AA_DC9DG10:DC14DG15_BB A 9 ? B 15 ? A 10 ? B 14 ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 CDR 1 n
2 CDR 2 n
2 ERI 3 n
3 ARI 1 n
3 1GL 2 n
#
_space_group.name_H-M_alt 'P 32 1 2'
_space_group.name_Hall 'P 32 2 (x,y,z+1/6)'
_space_group.IT_number 153
_space_group.crystal_system trigonal
_space_group.id 1
#
_atom_sites.entry_id 5YZE
_atom_sites.fract_transf_matrix[1][1] 0.021551
_atom_sites.fract_transf_matrix[1][2] 0.012443
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.024885
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.013546
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
_atom_type.scat_dispersion_real
_atom_type.scat_dispersion_imag
_atom_type.scat_Cromer_Mann_a1
_atom_type.scat_Cromer_Mann_a2
_atom_type.scat_Cromer_Mann_b1
_atom_type.scat_Cromer_Mann_b2
_atom_type.scat_Cromer_Mann_c
_atom_type.scat_source
_atom_type.scat_dispersion_source
C ? ? 3.54356 2.42580 25.62398 1.50364 0.0
;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
CO ? ? 21.85313 5.04979 2.45200 36.11361 0.0
;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
N ? ? 4.01032 2.96436 19.97189 1.75589 0.0
;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
O ? ? 4.49882 3.47563 15.80542 1.70748 0.0
;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
P ? ? 9.51135 5.44231 1.42069 35.72801 0.0
;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31.
;
?
#
loop_