HEADER TRANSCRIPTION/DNA 17-DEC-17 5Z00 TITLE ATVAL1 B3 DOMAIN IN COMPLEX WITH 15BP-DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*TP*T)- COMPND 3 3'); COMPND 4 CHAIN: A, E, I; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*T)- COMPND 8 3'); COMPND 9 CHAIN: B, J; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1; COMPND 13 CHAIN: C, G, K, M; COMPND 14 FRAGMENT: B3 DOMAIN, DNA BINDING DOMAIN; COMPND 15 SYNONYM: PROTEIN HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2,PROTEIN COMPND 16 VP1/ABI3-LIKE 1; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: DNA (5'-D(*TP*AP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*AP*TP*T)- COMPND 20 3'); COMPND 21 CHAIN: F; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 12 ORGANISM_TAXID: 3702; SOURCE 13 GENE: VAL1, HSI2, AT2G30470, T6B20.17; SOURCE 14 EXPRESSION_SYSTEM: ARABIDOPSIS THALIANA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 3702; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTIONAL FACTOR, VAL1, B3 DOMAIN, DNA COMPLEX, FLC, PLANT, KEYWDS 2 TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.X.WU,M.M.ZHANG REVDAT 3 27-MAR-24 5Z00 1 REMARK REVDAT 2 30-MAY-18 5Z00 1 JRNL REVDAT 1 02-MAY-18 5Z00 0 JRNL AUTH B.X.WU,M.M.ZHANG,S.C.SU,H.H.LIU,J.H.GAN,J.B.MA JRNL TITL STRUCTURAL INSIGHT INTO THE ROLE OF VAL1 B3 DOMAIN FOR JRNL TITL 2 TARGETING TO FLC LOCUS IN ARABIDOPSIS THALIANA. JRNL REF BIOCHEM. BIOPHYS. RES. 2018 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 29733847 JRNL DOI 10.1016/J.BBRC.2018.05.002 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.1 REMARK 3 NUMBER OF REFLECTIONS : 21086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2043 - 4.9428 1.00 3766 197 0.1686 0.2122 REMARK 3 2 4.9428 - 3.9263 1.00 3717 191 0.1870 0.2512 REMARK 3 3 3.9263 - 3.4308 1.00 3712 179 0.2417 0.3132 REMARK 3 4 3.4308 - 3.1175 0.90 3340 161 0.2548 0.2907 REMARK 3 5 3.1175 - 2.8943 0.70 2628 109 0.2964 0.3295 REMARK 3 6 2.8943 - 2.7238 0.49 1781 106 0.2928 0.3067 REMARK 3 7 2.7238 - 2.5875 0.31 1130 69 0.3082 0.3874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5589 REMARK 3 ANGLE : 1.539 7943 REMARK 3 CHIRALITY : 0.079 879 REMARK 3 PLANARITY : 0.011 714 REMARK 3 DIHEDRAL : 23.388 3033 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.587 REMARK 200 RESOLUTION RANGE LOW (A) : 66.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 77.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE PH 8.5, 30% (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.70800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, F, G, I, J, K, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO C 273 REMARK 465 LYS C 274 REMARK 465 TYR C 275 REMARK 465 THR C 276 REMARK 465 ASP C 277 REMARK 465 LYS C 278 REMARK 465 GLU C 279 REMARK 465 VAL C 280 REMARK 465 GLN C 281 REMARK 465 GLN C 282 REMARK 465 ILE C 283 REMARK 465 SER C 284 REMARK 465 GLY C 285 REMARK 465 ASN C 286 REMARK 465 ALA C 398 REMARK 465 GLY C 399 REMARK 465 ASP C 400 REMARK 465 DT F 0 REMARK 465 PRO G 273 REMARK 465 LYS G 274 REMARK 465 TYR G 275 REMARK 465 THR G 276 REMARK 465 ASP G 277 REMARK 465 LYS G 278 REMARK 465 GLU G 279 REMARK 465 VAL G 280 REMARK 465 GLN G 281 REMARK 465 GLN G 282 REMARK 465 ILE G 283 REMARK 465 SER G 284 REMARK 465 GLY G 285 REMARK 465 ASN G 286 REMARK 465 ALA G 398 REMARK 465 GLY G 399 REMARK 465 ASP G 400 REMARK 465 PRO K 273 REMARK 465 LYS K 274 REMARK 465 TYR K 275 REMARK 465 THR K 276 REMARK 465 ASP K 277 REMARK 465 LYS K 278 REMARK 465 GLU K 279 REMARK 465 VAL K 280 REMARK 465 GLN K 281 REMARK 465 GLN K 282 REMARK 465 ILE K 283 REMARK 465 SER K 284 REMARK 465 GLY K 285 REMARK 465 ASN K 286 REMARK 465 ALA K 398 REMARK 465 GLY K 399 REMARK 465 ASP K 400 REMARK 465 PRO M 273 REMARK 465 LYS M 274 REMARK 465 TYR M 275 REMARK 465 THR M 276 REMARK 465 ASP M 277 REMARK 465 LYS M 278 REMARK 465 GLU M 279 REMARK 465 VAL M 280 REMARK 465 GLN M 281 REMARK 465 GLN M 282 REMARK 465 ILE M 283 REMARK 465 SER M 284 REMARK 465 GLY M 285 REMARK 465 ASN M 286 REMARK 465 ALA M 398 REMARK 465 GLY M 399 REMARK 465 ASP M 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA F 1 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 DT E 301 N6 DA F 2 1.65 REMARK 500 O PRO M 350 O SER M 354 1.95 REMARK 500 N1 DA I 300 O4 DT J 3 1.95 REMARK 500 OP2 DG I 294 NH2 ARG K 347 2.04 REMARK 500 OG SER M 327 O TYR M 348 2.06 REMARK 500 N1 DA E 288 N3 DT F 15 2.10 REMARK 500 N3 DT E 301 N1 DA F 2 2.12 REMARK 500 OG1 THR C 378 NH2 ARG K 338 2.14 REMARK 500 OP2 DT J 7 OG SER K 302 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N1 DA I 288 O4 DT J 0 2458 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 291 O3' DC A 292 P -0.073 REMARK 500 DC A 292 O3' DT A 293 P -0.086 REMARK 500 DT A 293 O3' DG A 294 P -0.115 REMARK 500 DG A 294 O3' DC A 295 P -0.079 REMARK 500 DC B 5 O3' DA B 6 P -0.110 REMARK 500 DG B 11 O3' DA B 12 P -0.078 REMARK 500 DA B 12 O3' DA B 13 P -0.078 REMARK 500 DA B 13 O3' DT B 14 P -0.075 REMARK 500 DT E 293 O3' DG E 294 P -0.075 REMARK 500 DG E 294 O3' DG E 294 C3' -0.052 REMARK 500 DC F 5 O3' DA F 6 P -0.108 REMARK 500 DA F 6 O3' DA F 6 C3' -0.039 REMARK 500 DA F 6 O3' DT F 7 P -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC J 9 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 LYS K 333 CG - CD - CE ANGL. DEV. = -18.6 DEGREES REMARK 500 LYS K 333 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG K 347 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG K 347 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PRO K 350 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 294 -68.57 -103.43 REMARK 500 GLU C 328 109.99 -56.77 REMARK 500 ASN C 352 -122.82 57.61 REMARK 500 SER C 354 -169.90 -76.34 REMARK 500 LEU G 294 -65.87 -102.42 REMARK 500 ASN G 352 -125.73 53.45 REMARK 500 LEU K 294 -65.53 -101.81 REMARK 500 ARG K 306 -80.64 13.45 REMARK 500 SER K 327 -74.59 -46.89 REMARK 500 ASN K 352 -130.21 53.44 REMARK 500 MET K 370 73.44 49.08 REMARK 500 LEU M 294 -64.23 -103.90 REMARK 500 ALA M 304 -125.92 62.62 REMARK 500 ASN M 352 -153.38 77.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN K 367 SER K 368 144.38 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Z00 A 288 302 PDB 5Z00 5Z00 288 302 DBREF 5Z00 B 0 14 PDB 5Z00 5Z00 0 14 DBREF 5Z00 C 273 400 UNP Q8W4L5 VAL1_ARATH 273 400 DBREF 5Z00 E 288 302 PDB 5Z00 5Z00 288 302 DBREF 5Z00 F 0 15 PDB 5Z00 5Z00 0 15 DBREF 5Z00 G 273 400 UNP Q8W4L5 VAL1_ARATH 273 400 DBREF 5Z00 I 288 302 PDB 5Z00 5Z00 288 302 DBREF 5Z00 J 0 14 PDB 5Z00 5Z00 0 14 DBREF 5Z00 K 273 400 UNP Q8W4L5 VAL1_ARATH 273 400 DBREF 5Z00 M 273 400 UNP Q8W4L5 VAL1_ARATH 273 400 SEQRES 1 A 15 DA DA DT DT DC DT DG DC DA DT DG DG DA SEQRES 2 A 15 DT DT SEQRES 1 B 15 DT DA DA DT DC DC DA DT DG DC DA DG DA SEQRES 2 B 15 DA DT SEQRES 1 C 128 PRO LYS TYR THR ASP LYS GLU VAL GLN GLN ILE SER GLY SEQRES 2 C 128 ASN LEU ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR SEQRES 3 C 128 LEU SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL SEQRES 4 C 128 LEU PRO LYS ALA CYS ALA GLU ALA TYR PHE PRO PRO ILE SEQRES 5 C 128 SER GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL SEQRES 6 C 128 ARG GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO SEQRES 7 C 128 ASN ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR SEQRES 8 C 128 PRO CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR SEQRES 9 C 128 VAL THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE SEQRES 10 C 128 MET GLY SER ARG LYS ALA ALA ASN ALA GLY ASP SEQRES 1 E 15 DA DA DT DT DC DT DG DC DA DT DG DG DA SEQRES 2 E 15 DT DT SEQRES 1 F 16 DT DA DA DT DC DC DA DT DG DC DA DG DA SEQRES 2 F 16 DA DT DT SEQRES 1 G 128 PRO LYS TYR THR ASP LYS GLU VAL GLN GLN ILE SER GLY SEQRES 2 G 128 ASN LEU ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR SEQRES 3 G 128 LEU SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL SEQRES 4 G 128 LEU PRO LYS ALA CYS ALA GLU ALA TYR PHE PRO PRO ILE SEQRES 5 G 128 SER GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL SEQRES 6 G 128 ARG GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO SEQRES 7 G 128 ASN ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR SEQRES 8 G 128 PRO CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR SEQRES 9 G 128 VAL THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE SEQRES 10 G 128 MET GLY SER ARG LYS ALA ALA ASN ALA GLY ASP SEQRES 1 I 15 DA DA DT DT DC DT DG DC DA DT DG DG DA SEQRES 2 I 15 DT DT SEQRES 1 J 15 DT DA DA DT DC DC DA DT DG DC DA DG DA SEQRES 2 J 15 DA DT SEQRES 1 K 128 PRO LYS TYR THR ASP LYS GLU VAL GLN GLN ILE SER GLY SEQRES 2 K 128 ASN LEU ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR SEQRES 3 K 128 LEU SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL SEQRES 4 K 128 LEU PRO LYS ALA CYS ALA GLU ALA TYR PHE PRO PRO ILE SEQRES 5 K 128 SER GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL SEQRES 6 K 128 ARG GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO SEQRES 7 K 128 ASN ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR SEQRES 8 K 128 PRO CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR SEQRES 9 K 128 VAL THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE SEQRES 10 K 128 MET GLY SER ARG LYS ALA ALA ASN ALA GLY ASP SEQRES 1 M 128 PRO LYS TYR THR ASP LYS GLU VAL GLN GLN ILE SER GLY SEQRES 2 M 128 ASN LEU ASN LEU ASN ILE VAL PRO LEU PHE GLU LYS THR SEQRES 3 M 128 LEU SER ALA SER ASP ALA GLY ARG ILE GLY ARG LEU VAL SEQRES 4 M 128 LEU PRO LYS ALA CYS ALA GLU ALA TYR PHE PRO PRO ILE SEQRES 5 M 128 SER GLN SER GLU GLY ILE PRO LEU LYS ILE GLN ASP VAL SEQRES 6 M 128 ARG GLY ARG GLU TRP THR PHE GLN PHE ARG TYR TRP PRO SEQRES 7 M 128 ASN ASN ASN SER ARG MET TYR VAL LEU GLU GLY VAL THR SEQRES 8 M 128 PRO CYS ILE GLN SER MET MET LEU GLN ALA GLY ASP THR SEQRES 9 M 128 VAL THR PHE SER ARG VAL ASP PRO GLY GLY LYS LEU ILE SEQRES 10 M 128 MET GLY SER ARG LYS ALA ALA ASN ALA GLY ASP HELIX 1 AA1 SER C 300 GLY C 305 1 6 HELIX 2 AA2 PRO C 313 PHE C 321 1 9 HELIX 3 AA3 VAL C 362 MET C 370 1 9 HELIX 4 AA4 SER G 300 GLY G 305 1 6 HELIX 5 AA5 PRO G 313 PHE G 321 1 9 HELIX 6 AA6 VAL G 362 MET G 369 1 8 HELIX 7 AA7 PRO K 313 PHE K 321 1 9 HELIX 8 AA8 VAL K 362 MET K 369 1 8 HELIX 9 AA9 PRO M 313 PHE M 321 1 9 HELIX 10 AB1 VAL M 362 MET M 369 1 8 SHEET 1 AA1 7 ASN C 290 THR C 298 0 SHEET 2 AA1 7 THR C 376 ASP C 383 -1 O ARG C 381 N VAL C 292 SHEET 3 AA1 7 LYS C 387 ARG C 393 -1 O ILE C 389 N SER C 380 SHEET 4 AA1 7 ILE C 330 GLN C 335 1 N GLN C 335 O MET C 390 SHEET 5 AA1 7 GLU C 341 PRO C 350 -1 O PHE C 346 N ILE C 330 SHEET 6 AA1 7 ARG C 355 GLU C 360 -1 O VAL C 358 N ARG C 347 SHEET 7 AA1 7 ARG C 309 LEU C 312 -1 N LEU C 310 O LEU C 359 SHEET 1 AA2 7 ASN G 290 THR G 298 0 SHEET 2 AA2 7 THR G 376 ASP G 383 -1 O ARG G 381 N VAL G 292 SHEET 3 AA2 7 LYS G 387 ARG G 393 -1 O GLY G 391 N THR G 378 SHEET 4 AA2 7 ILE G 330 ASP G 336 1 N GLN G 335 O LEU G 388 SHEET 5 AA2 7 GLU G 341 ASN G 351 -1 O PHE G 344 N LEU G 332 SHEET 6 AA2 7 SER G 354 GLU G 360 -1 O VAL G 358 N ARG G 347 SHEET 7 AA2 7 ARG G 309 LEU G 312 -1 N LEU G 310 O LEU G 359 SHEET 1 AA3 7 ASN K 290 THR K 298 0 SHEET 2 AA3 7 THR K 376 ASP K 383 -1 O ARG K 381 N VAL K 292 SHEET 3 AA3 7 LYS K 387 ARG K 393 -1 O ILE K 389 N SER K 380 SHEET 4 AA3 7 PRO K 331 ASP K 336 1 N GLN K 335 O MET K 390 SHEET 5 AA3 7 GLU K 341 ASN K 351 -1 O PHE K 344 N LEU K 332 SHEET 6 AA3 7 SER K 354 GLU K 360 -1 O SER K 354 N ASN K 351 SHEET 7 AA3 7 ARG K 309 LEU K 312 -1 N LEU K 310 O LEU K 359 SHEET 1 AA4 7 ASN M 290 THR M 298 0 SHEET 2 AA4 7 THR M 376 ASP M 383 -1 O ARG M 381 N VAL M 292 SHEET 3 AA4 7 LYS M 387 ARG M 393 -1 O ILE M 389 N SER M 380 SHEET 4 AA4 7 ILE M 330 ASP M 336 1 N GLN M 335 O MET M 390 SHEET 5 AA4 7 GLU M 341 TRP M 349 -1 O PHE M 344 N LEU M 332 SHEET 6 AA4 7 MET M 356 GLU M 360 -1 O VAL M 358 N ARG M 347 SHEET 7 AA4 7 ARG M 309 LEU M 312 -1 N LEU M 310 O LEU M 359 CISPEP 1 ASP C 383 PRO C 384 0 2.99 CISPEP 2 ASP G 383 PRO G 384 0 5.12 CISPEP 3 ASP K 383 PRO K 384 0 1.26 CISPEP 4 ASP M 383 PRO M 384 0 -0.06 CRYST1 68.223 97.416 71.149 90.00 110.19 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014658 0.000000 0.005390 0.00000 SCALE2 0.000000 0.010265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014975 0.00000