HEADER OXIDOREDUCTASE 19-DEC-17 5Z0C TITLE NEROL DEHYDROGENASE FROM PERSICARIA MINOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEROL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PERSICARIA MINOR; SOURCE 3 ORGANISM_TAXID: 488003; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B(+) KEYWDS NEROL DEHYDROGENASE, OXIDOREDUCTASE, PERSICARIA MINOR, CITRAL KEYWDS 2 BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR C.S.TAN,C.L.NG,Z.ZAINAL REVDAT 2 22-NOV-23 5Z0C 1 JRNL REVDAT 1 17-JAN-18 5Z0C 0 JRNL AUTH C.S.TAN,M.HASSAN,Z.A.MOHAMED HUSSEIN,I.ISMAIL,K.L.HO,C.L.NG, JRNL AUTH 2 Z.ZAINAL JRNL TITL STRUCTURAL AND KINETIC STUDIES OF A NOVEL NEROL JRNL TITL 2 DEHYDROGENASE FROM PERSICARIA MINOR, A NEROL-SPECIFIC ENZYME JRNL TITL 3 FOR CITRAL BIOSYNTHESIS. JRNL REF PLANT PHYSIOL. BIOCHEM. V. 123 359 2017 JRNL REFN ESSN 1873-2690 JRNL PMID 29304481 JRNL DOI 10.1016/J.PLAPHY.2017.12.033 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 50260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3667 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 194 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2915 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2802 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3963 ; 2.082 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6484 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 381 ; 6.210 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.979 ;23.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;14.438 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.835 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3283 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5Z0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52988 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 79.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.357 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.37 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1YQD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES SODIUM, PROPANOL, PEG 4000, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 54.03000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 ASN A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 805 1.73 REMARK 500 O HOH A 633 O HOH A 850 1.89 REMARK 500 O HOH A 633 O HOH A 736 1.94 REMARK 500 O HOH A 511 O HOH A 740 1.95 REMARK 500 O HOH A 775 O HOH A 805 1.96 REMARK 500 O HOH A 850 O HOH A 851 1.97 REMARK 500 O HOH A 522 O HOH A 576 2.02 REMARK 500 O HOH A 571 O HOH A 653 2.11 REMARK 500 O HOH A 518 O HOH A 735 2.14 REMARK 500 O LEU A 159 O HOH A 501 2.15 REMARK 500 O HOH A 566 O HOH A 728 2.15 REMARK 500 O HOH A 503 O HOH A 522 2.16 REMARK 500 NH1 ARG A 323 O HOH A 502 2.19 REMARK 500 ND1 HIS A 373 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 753 O HOH A 834 2755 2.03 REMARK 500 O HOH A 526 O HOH A 605 3656 2.07 REMARK 500 O HOH A 753 O HOH A 850 3647 2.11 REMARK 500 O HOH A 531 O HOH A 756 3646 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 MET A 199 CG - SD - CE ANGL. DEV. = -10.4 DEGREES REMARK 500 MET A 199 CG - SD - CE ANGL. DEV. = 13.4 DEGREES REMARK 500 ARG A 323 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 332 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 64 21.71 -141.28 REMARK 500 SER A 106 53.27 -157.44 REMARK 500 HIS A 113 30.71 73.24 REMARK 500 CYS A 167 -65.28 -130.35 REMARK 500 SER A 257 52.50 -103.79 REMARK 500 ILE A 304 -134.07 30.91 REMARK 500 ASP A 345 56.26 -95.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 889 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 CYS A 167 SG 125.6 REMARK 620 3 HOH A 637 O 103.0 98.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 104 SG REMARK 620 2 CYS A 107 SG 107.3 REMARK 620 3 CYS A 110 SG 119.4 107.0 REMARK 620 4 CYS A 118 SG 105.8 116.6 101.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 405 DBREF 5Z0C A 1 366 UNP J7JYU1 J7JYU1_9CARY 1 366 SEQADV 5Z0C VAL A 367 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C GLU A 368 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 369 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 370 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 371 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 372 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 373 UNP J7JYU1 EXPRESSION TAG SEQADV 5Z0C HIS A 374 UNP J7JYU1 EXPRESSION TAG SEQRES 1 A 374 MET GLU MET GLY ASN GLY THR GLU GLU HIS THR VAL LYS SEQRES 2 A 374 ALA VAL GLY TRP ALA ALA ARG ASP PRO SER GLY HIS LEU SEQRES 3 A 374 SER PRO PHE THR PHE SER ARG ARG ALA THR GLY GLU LEU SEQRES 4 A 374 ASP VAL THR PHE LYS VAL LEU TYR CYS GLY ILE CYS HIS SEQRES 5 A 374 SER ASP LEU HIS TYR ILE LYS ASN GLU TRP SER ASN THR SEQRES 6 A 374 ILE TYR PRO ALA LEU PRO GLY HIS GLU ILE VAL GLY GLU SEQRES 7 A 374 VAL THR GLU VAL GLY SER LYS VAL ASN LYS PHE LYS VAL SEQRES 8 A 374 GLY ASP LYS VAL GLY VAL GLY CYS ILE VAL GLY SER CYS SEQRES 9 A 374 HIS SER CYS PRO ASN CYS ASN ASN HIS LEU GLU ASN TYR SEQRES 10 A 374 CYS PRO ASN ARG ILE LEU THR PHE GLY SER ARG TYR TYR SEQRES 11 A 374 ASP GLY THR LEU ASN HIS GLY GLY TYR SER ASP LEU MET SEQRES 12 A 374 VAL VAL GLN GLU HIS PHE ALA VAL ARG ILE PRO ASP ALA SEQRES 13 A 374 LEU PRO LEU ASP SER ALA ALA PRO LEU LEU CYS ALA GLY SEQRES 14 A 374 ILE THR VAL TYR SER PRO LEU ARG TYR TYR GLY LEU ASP SEQRES 15 A 374 LYS PRO GLY LEU HIS VAL GLY VAL VAL GLY LEU GLY GLY SEQRES 16 A 374 LEU GLY HIS MET ALA VAL LYS PHE ALA LYS ALA PHE GLY SEQRES 17 A 374 VAL LYS VAL THR VAL VAL SER THR SER PRO ALA LYS LYS SEQRES 18 A 374 GLU ASP ALA ILE SER GLY LEU GLY ALA HIS SER PHE ILE SEQRES 19 A 374 LEU SER THR ASP ALA GLU GLN MET GLN ALA ALA VAL GLY SEQRES 20 A 374 THR MET ASP GLY ILE ILE ASP THR VAL SER ALA SER HIS SEQRES 21 A 374 PRO LEU PRO PRO LEU ILE SER LEU LEU LYS SER HIS GLY SEQRES 22 A 374 LYS LEU VAL MET VAL GLY ASP PRO PRO LYS PRO LEU GLU SEQRES 23 A 374 LEU PRO VAL PHE PRO LEU LEU LEU GLY ARG LYS MET VAL SEQRES 24 A 374 ALA GLY SER ALA ILE GLY GLY MET LYS GLU THR GLN GLU SEQRES 25 A 374 MET ILE ASP PHE ALA ALA LYS GLU GLY VAL ARG ALA ASP SEQRES 26 A 374 VAL GLU VAL ILE PRO MET ASP TYR VAL ASN THR ALA MET SEQRES 27 A 374 GLN ARG VAL SER LYS SER ASP VAL LYS TYR ARG PHE VAL SEQRES 28 A 374 ILE ASP ILE GLY ASN THR PHE ASN ASP SER LEU ILE SER SEQRES 29 A 374 SER GLU VAL GLU HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET BME A 405 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM BME BETA-MERCAPTOETHANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 BME C2 H6 O S FORMUL 7 HOH *389(H2 O) HELIX 1 AA1 CYS A 51 LYS A 59 1 9 HELIX 2 AA2 CYS A 107 ASN A 112 1 6 HELIX 3 AA3 LEU A 114 CYS A 118 5 5 HELIX 4 AA4 HIS A 148 ALA A 150 5 3 HELIX 5 AA5 PRO A 158 ALA A 163 1 6 HELIX 6 AA6 PRO A 164 LEU A 166 5 3 HELIX 7 AA7 CYS A 167 TYR A 179 1 13 HELIX 8 AA8 GLY A 194 PHE A 207 1 14 HELIX 9 AA9 ALA A 219 SER A 226 1 8 HELIX 10 AB1 ASP A 238 ALA A 245 1 8 HELIX 11 AB2 LEU A 262 LEU A 268 1 7 HELIX 12 AB3 VAL A 289 ARG A 296 1 8 HELIX 13 AB4 GLY A 306 GLY A 321 1 16 HELIX 14 AB5 PRO A 330 ASP A 332 5 3 HELIX 15 AB6 TYR A 333 LYS A 343 1 11 HELIX 16 AB7 ILE A 354 PHE A 358 1 5 HELIX 17 AB8 ASN A 359 ILE A 363 5 5 SHEET 1 AA1 2 THR A 11 ALA A 19 0 SHEET 2 AA1 2 LEU A 26 ARG A 34 -1 O PHE A 29 N GLY A 16 SHEET 1 AA2 5 LEU A 142 GLN A 146 0 SHEET 2 AA2 5 ASP A 40 GLY A 49 -1 N VAL A 41 O VAL A 145 SHEET 3 AA2 5 ILE A 75 VAL A 82 -1 O VAL A 76 N LEU A 46 SHEET 4 AA2 5 LYS A 94 VAL A 97 -1 O VAL A 97 N ILE A 75 SHEET 5 AA2 5 VAL A 151 ARG A 152 -1 O VAL A 151 N GLY A 96 SHEET 1 AA3 4 LEU A 142 GLN A 146 0 SHEET 2 AA3 4 ASP A 40 GLY A 49 -1 N VAL A 41 O VAL A 145 SHEET 3 AA3 4 ARG A 349 ASP A 353 -1 O ILE A 352 N CYS A 48 SHEET 4 AA3 4 VAL A 326 ILE A 329 1 N ILE A 329 O ASP A 353 SHEET 1 AA4 2 ILE A 100 GLY A 102 0 SHEET 2 AA4 2 ILE A 122 LEU A 123 -1 O ILE A 122 N GLY A 102 SHEET 1 AA5 6 SER A 232 LEU A 235 0 SHEET 2 AA5 6 LYS A 210 SER A 215 1 N VAL A 213 O ILE A 234 SHEET 3 AA5 6 HIS A 187 VAL A 191 1 N VAL A 188 O LYS A 210 SHEET 4 AA5 6 MET A 249 ASP A 254 1 O ILE A 253 N GLY A 189 SHEET 5 AA5 6 LEU A 269 MET A 277 1 O VAL A 276 N ILE A 252 SHEET 6 AA5 6 MET A 298 GLY A 301 1 O ALA A 300 N MET A 277 LINK SG CYS A 51 ZN ZN A 402 1555 1555 2.30 LINK SG CYS A 104 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 107 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 110 ZN ZN A 401 1555 1555 2.38 LINK SG CYS A 118 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 167 ZN ZN A 402 1555 1555 2.36 LINK ZN ZN A 402 O HOH A 637 1555 1555 2.15 CISPEP 1 TYR A 67 PRO A 68 0 1.10 CISPEP 2 LYS A 347 TYR A 348 0 9.76 SITE 1 AC1 4 CYS A 104 CYS A 107 CYS A 110 CYS A 118 SITE 1 AC2 4 CYS A 51 HIS A 73 CYS A 167 HOH A 637 SITE 1 AC3 8 GLU A 327 ILE A 329 PRO A 330 HOH A 509 SITE 2 AC3 8 HOH A 528 HOH A 604 HOH A 649 HOH A 723 SITE 1 AC4 4 TYR A 178 TYR A 179 LYS A 274 HOH A 508 SITE 1 AC5 5 HIS A 52 GLY A 195 LEU A 196 ARG A 349 SITE 2 AC5 5 HOH A 602 CRYST1 83.000 54.030 79.370 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012048 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012599 0.00000