HEADER OXIDOREDUCTASE/METAL BINDING PROTEIN 19-DEC-17 5Z0E TITLE CRYSTAL STRUCTURE OF COPPER-BOUND TYROSINASE FROM STREPTOMYCES TITLE 2 CASTANEOGLOBISPORUS IN COMPLEX WITH THE Y98F MUTANT OF THE CADDIE TITLE 3 PROTEIN OBTAINED BY SOAKING IN THE HYDROXYLAMINE-CONTAINING SOLUTION TITLE 4 FOR 2 H AT 298 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.18.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MELC; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CADDIE PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CASTANEOGLOBISPORUS; SOURCE 3 ORGANISM_TAXID: 79261; SOURCE 4 STRAIN: HUT6202; SOURCE 5 GENE: TYRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-MEL2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: STREPTOMYCES CASTANEOGLOBISPORUS; SOURCE 13 ORGANISM_TAXID: 79261; SOURCE 14 STRAIN: HUT6202; SOURCE 15 GENE: ORF378; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-MEL2 KEYWDS TYROSINASE, CATALYTIC MECHANISM, OXIDOREDUCTASE-METAL BINDING PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.MATOBA,M.SUGIYAMA REVDAT 2 22-NOV-23 5Z0E 1 LINK REVDAT 1 26-DEC-18 5Z0E 0 JRNL AUTH Y.MATOBA,M.SUGIYAMA JRNL TITL CATALYTIC MECHANISM OF TYROSINASE IMPLIED FROM THE QUINONE JRNL TITL 2 FORMATION ON THE TYR98 RESIDUE OF THE CADDIE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.132 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.131 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 5905 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.123 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.122 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 4725 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 94056 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3203.6 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 19 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 ANGLE DISTANCES (A) : 0.031 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.030 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.082 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.091 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.032 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.031 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.103 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY ? REMARK 4 REMARK 4 5Z0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300001884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1WXC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM NITRATE, HEPES, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 604 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 666 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 717 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 ARG B 8 REMARK 465 ALA B 9 REMARK 465 LEU B 10 REMARK 465 THR B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 ALA B 15 REMARK 465 VAL B 16 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 THR B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 ALA B 22 REMARK 465 ALA B 23 REMARK 465 VAL B 24 REMARK 465 THR B 25 REMARK 465 LEU B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 PRO B 29 REMARK 465 ALA B 30 REMARK 465 ALA B 31 REMARK 465 SER B 32 REMARK 465 ALA B 33 REMARK 465 ALA B 34 REMARK 465 GLY B 35 REMARK 465 HIS B 36 REMARK 465 HIS B 37 REMARK 465 GLU B 38 REMARK 465 PRO B 39 REMARK 465 GLY B 60 REMARK 465 GLY B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 GLU B 67 REMARK 465 HIS B 68 REMARK 465 GLY B 69 REMARK 465 GLY B 70 REMARK 465 PRO B 124 REMARK 465 ALA B 125 REMARK 465 ASN B 126 REMARK 465 LEU B 127 REMARK 465 GLU B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 465 HIS B 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 17 CG - CD - NE ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 47 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 PHE A 103 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLU A 175 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 228 CD - NE - CZ ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 229 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 229 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 53 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 53 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 105 CD - NE - CZ ANGL. DEV. = 23.1 DEGREES REMARK 500 PHE B 123 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 52 -53.63 -128.50 REMARK 500 PHE A 103 -96.38 -133.64 REMARK 500 ASN A 188 105.79 76.66 REMARK 500 LEU A 189 -77.09 -96.74 REMARK 500 ASP A 243 -5.85 73.42 REMARK 500 ASN A 255 -10.33 65.79 REMARK 500 SER B 96 67.41 -152.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 713 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 715 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 717 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 718 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 720 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 721 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH B 403 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 404 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 405 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HIS A 54 NE2 95.1 REMARK 620 3 HIS A 63 NE2 97.0 87.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 38 NE2 REMARK 620 2 HIS A 54 NE2 106.4 REMARK 620 3 HIS A 63 NE2 138.4 107.1 REMARK 620 4 HOH A 401 O 91.1 92.3 111.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 190 NE2 REMARK 620 2 HIS A 194 NE2 98.8 REMARK 620 3 HIS A 216 NE2 103.2 139.6 REMARK 620 4 PER A 303 O1 86.4 107.6 107.2 REMARK 620 5 PER A 303 O2 121.1 98.2 98.7 34.7 REMARK 620 6 HOH A 401 O 106.2 100.2 105.4 20.2 14.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 190 NE2 REMARK 620 2 HIS A 194 NE2 99.7 REMARK 620 3 HIS A 216 NE2 87.8 119.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 82 NE2 REMARK 620 2 MET B 84 SD 107.5 REMARK 620 3 HIS B 97 NE2 122.5 129.8 REMARK 620 4 NO3 B 202 N 63.9 148.6 64.0 REMARK 620 5 NO3 B 202 O3 46.6 126.9 88.5 25.4 REMARK 620 6 NO3 B 202 O1 60.2 166.1 63.4 35.2 50.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PER A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 203 DBREF 5Z0E A 1 273 UNP Q83WS2 Q83WS2_9ACTN 1 273 DBREF 5Z0E B 1 126 UNP Q83WS1 Q83WS1_9ACTN 1 126 SEQADV 5Z0E SER A 123 UNP Q83WS2 PHE 123 CONFLICT SEQADV 5Z0E LEU A 274 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E GLU A 275 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 276 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 277 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 278 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 279 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 280 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E HIS A 281 UNP Q83WS2 EXPRESSION TAG SEQADV 5Z0E PHE B 98 UNP Q83WS1 TYR 98 ENGINEERED MUTATION SEQADV 5Z0E LEU B 127 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E GLU B 128 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 129 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 130 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 131 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 132 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 133 UNP Q83WS1 EXPRESSION TAG SEQADV 5Z0E HIS B 134 UNP Q83WS1 EXPRESSION TAG SEQRES 1 A 281 MET THR VAL ARG LYS ASN GLN ALA THR LEU THR ALA ASP SEQRES 2 A 281 GLU LYS ARG ARG PHE VAL ALA ALA VAL LEU GLU LEU LYS SEQRES 3 A 281 ARG SER GLY ARG TYR ASP GLU PHE VAL ARG THR HIS ASN SEQRES 4 A 281 GLU PHE ILE MET SER ASP THR ASP SER GLY GLU ARG THR SEQRES 5 A 281 GLY HIS ARG SER PRO SER PHE LEU PRO TRP HIS ARG ARG SEQRES 6 A 281 PHE LEU LEU ASP PHE GLU GLN ALA LEU GLN SER VAL ASP SEQRES 7 A 281 SER SER VAL THR LEU PRO TYR TRP ASP TRP SER ALA ASP SEQRES 8 A 281 ARG THR VAL ARG ALA SER LEU TRP ALA PRO ASP PHE LEU SEQRES 9 A 281 GLY GLY THR GLY ARG SER THR ASP GLY ARG VAL MET ASP SEQRES 10 A 281 GLY PRO PHE ALA ALA SER THR GLY ASN TRP PRO ILE ASN SEQRES 11 A 281 VAL ARG VAL ASP SER ARG THR TYR LEU ARG ARG SER LEU SEQRES 12 A 281 GLY GLY SER VAL ALA GLU LEU PRO THR ARG ALA GLU VAL SEQRES 13 A 281 GLU SER VAL LEU ALA ILE SER ALA TYR ASP LEU PRO PRO SEQRES 14 A 281 TYR ASN SER ALA SER GLU GLY PHE ARG ASN HIS LEU GLU SEQRES 15 A 281 GLY TRP ARG GLY VAL ASN LEU HIS ASN ARG VAL HIS VAL SEQRES 16 A 281 TRP VAL GLY GLY GLN MET ALA THR GLY VAL SER PRO ASN SEQRES 17 A 281 ASP PRO VAL PHE TRP LEU HIS HIS ALA TYR VAL ASP LYS SEQRES 18 A 281 LEU TRP ALA GLU TRP GLN ARG ARG HIS PRO ASP SER ALA SEQRES 19 A 281 TYR VAL PRO THR GLY GLY THR PRO ASP VAL VAL ASP LEU SEQRES 20 A 281 ASN GLU THR MET LYS PRO TRP ASN THR VAL ARG PRO ALA SEQRES 21 A 281 ASP LEU LEU ASP HIS THR ALA TYR TYR THR PHE ASP ALA SEQRES 22 A 281 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 134 MET PRO GLU ILE THR ARG ARG ARG ALA LEU THR ALA ALA SEQRES 2 B 134 ALA ALA VAL ALA ALA THR ALA SER ALA ALA VAL THR LEU SEQRES 3 B 134 ALA ALA PRO ALA ALA SER ALA ALA GLY HIS HIS GLU PRO SEQRES 4 B 134 ALA ALA PRO GLU SER PHE ASP GLU VAL TYR LYS GLY ARG SEQRES 5 B 134 ARG ILE GLN GLY ARG PRO ALA GLY GLY GLY ALA HIS HIS SEQRES 6 B 134 HIS GLU HIS GLY GLY GLY TYR GLU VAL PHE VAL ASP GLY SEQRES 7 B 134 VAL GLN LEU HIS VAL MET ARG ASN ALA ASP GLY SER TRP SEQRES 8 B 134 ILE SER VAL VAL SER HIS PHE ASP PRO VAL PRO THR PRO SEQRES 9 B 134 ARG ALA ALA ALA ARG ALA ALA VAL ASP GLU LEU GLN GLY SEQRES 10 B 134 ALA PRO LEU LEU PRO PHE PRO ALA ASN LEU GLU HIS HIS SEQRES 11 B 134 HIS HIS HIS HIS HET CU A 301 2 HET CU A 302 2 HET PER A 303 2 HET NO3 A 304 4 HET NO3 A 305 4 HET NO3 A 306 4 HET NO3 A 307 4 HET CU B 201 2 HET NO3 B 202 4 HET NO3 B 203 4 HETNAM CU COPPER (II) ION HETNAM PER PEROXIDE ION HETNAM NO3 NITRATE ION FORMUL 3 CU 3(CU 2+) FORMUL 5 PER O2 2- FORMUL 6 NO3 6(N O3 1-) FORMUL 13 HOH *426(H2 O) HELIX 1 AA1 ASN A 6 LEU A 10 5 5 HELIX 2 AA2 THR A 11 SER A 28 1 18 HELIX 3 AA3 GLY A 29 ASP A 45 1 17 HELIX 4 AA4 SER A 58 ASP A 78 1 21 HELIX 5 AA5 ALA A 96 ALA A 100 5 5 HELIX 6 AA6 ALA A 121 GLY A 125 5 5 HELIX 7 AA7 THR A 152 ALA A 161 1 10 HELIX 8 AA8 GLY A 176 GLY A 183 1 8 HELIX 9 AA9 LEU A 189 GLY A 198 1 10 HELIX 10 AB1 GLY A 199 THR A 203 5 5 HELIX 11 AB2 VAL A 205 ASP A 209 5 5 HELIX 12 AB3 PRO A 210 HIS A 230 1 21 HELIX 13 AB4 ARG A 258 LEU A 263 1 6 HELIX 14 AB5 ASP A 264 TYR A 268 5 5 HELIX 15 AB6 THR B 103 GLN B 116 1 14 SHEET 1 AA1 2 VAL A 3 ARG A 4 0 SHEET 2 AA1 2 THR A 270 PHE A 271 1 O THR A 270 N ARG A 4 SHEET 1 AA2 4 PHE B 45 TYR B 49 0 SHEET 2 AA2 4 ARG B 52 ARG B 57 -1 O ILE B 54 N GLU B 47 SHEET 3 AA2 4 GLU B 73 VAL B 76 -1 O GLU B 73 N ARG B 57 SHEET 4 AA2 4 VAL B 79 LEU B 81 -1 O LEU B 81 N VAL B 74 SHEET 1 AA3 3 VAL B 83 ARG B 85 0 SHEET 2 AA3 3 TRP B 91 SER B 93 -1 O ILE B 92 N MET B 84 SHEET 3 AA3 3 SER B 96 VAL B 101 -1 O VAL B 101 N TRP B 91 LINK NE2 HIS A 38 CU B CU A 301 1555 1555 2.16 LINK NE2 HIS A 38 CU A CU A 301 1555 1555 1.85 LINK NE2 HIS A 54 CU B CU A 301 1555 1555 2.15 LINK NE2 HIS A 54 CU A CU A 301 1555 1555 2.11 LINK NE2 HIS A 63 CU B CU A 301 1555 1555 2.53 LINK NE2 HIS A 63 CU A CU A 301 1555 1555 1.92 LINK NE2 HIS A 190 CU A CU A 302 1555 1555 2.01 LINK NE2 HIS A 190 CU B CU A 302 1555 1555 2.08 LINK NE2 HIS A 194 CU A CU A 302 1555 1555 2.00 LINK NE2 HIS A 194 CU B CU A 302 1555 1555 1.90 LINK NE2 HIS A 216 CU A CU A 302 1555 1555 1.90 LINK NE2 HIS A 216 CU B CU A 302 1555 1555 2.33 LINK CU A CU A 301 O AHOH A 401 1555 1555 2.58 LINK CU A CU A 302 O1 APER A 303 1555 1555 2.55 LINK CU A CU A 302 O2 APER A 303 1555 1555 2.07 LINK CU A CU A 302 O AHOH A 401 1555 1555 2.50 LINK NE2AHIS B 82 CU A CU B 201 1555 1555 1.98 LINK NE2BHIS B 82 CU B CU B 201 1555 1555 2.21 LINK SD AMET B 84 CU A CU B 201 1555 1555 2.28 LINK NE2AHIS B 97 CU A CU B 201 1555 1555 2.07 LINK CU A CU B 201 N ANO3 B 202 1555 1555 2.07 LINK CU A CU B 201 O3 ANO3 B 202 1555 1555 2.66 LINK CU A CU B 201 O1 ANO3 B 202 1555 1555 1.80 CISPEP 1 PRO A 168 PRO A 169 0 7.46 CISPEP 2 VAL A 236 PRO A 237 0 0.75 CISPEP 3 LYS A 252 PRO A 253 0 0.59 SITE 1 AC1 6 HIS A 38 HIS A 54 HIS A 63 CU A 302 SITE 2 AC1 6 PER A 303 HOH A 401 SITE 1 AC2 6 HIS A 190 HIS A 194 HIS A 216 CU A 301 SITE 2 AC2 6 PER A 303 HOH A 401 SITE 1 AC3 10 HIS A 38 HIS A 54 HIS A 190 HIS A 194 SITE 2 AC3 10 PHE A 212 HIS A 216 CU A 301 CU A 302 SITE 3 AC3 10 HOH A 401 PHE B 98 SITE 1 AC4 9 ARG A 132 VAL A 133 ASP A 134 ARG A 140 SITE 2 AC4 9 GLN A 200 THR A 203 VAL A 205 HOH A 504 SITE 3 AC4 9 VAL B 95 SITE 1 AC5 8 TYR A 165 TRP A 223 TRP A 226 GLN A 227 SITE 2 AC5 8 ALA A 234 TYR A 235 LEU A 263 HOH A 551 SITE 1 AC6 9 THR A 238 GLY A 239 ASP A 246 LEU A 247 SITE 2 AC6 9 ASN A 248 HOH A 477 HOH A 478 HOH A 534 SITE 3 AC6 9 LYS B 50 SITE 1 AC7 7 ARG A 228 HIS A 265 THR A 266 THR A 270 SITE 2 AC7 7 PHE A 271 LEU A 274 HOH A 406 SITE 1 AC8 5 ILE A 42 HIS B 82 MET B 84 HIS B 97 SITE 2 AC8 5 NO3 B 202 SITE 1 AC9 9 ILE A 42 HIS B 82 VAL B 83 MET B 84 SITE 2 AC9 9 ILE B 92 SER B 93 VAL B 94 HIS B 97 SITE 3 AC9 9 CU B 201 SITE 1 AD1 9 GLY A 125 PRO A 128 THR B 103 ARG B 105 SITE 2 AD1 9 ALA B 106 ARG B 109 HOH B 303 HOH B 351 SITE 3 AD1 9 HOH B 358 CRYST1 64.630 96.930 54.510 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018345 0.00000