HEADER RIBOSOME 26-DEC-17 5Z1G TITLE STRUCTURE OF THE BRX1 AND EBP2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RRNA-PROCESSING PROTEIN EBP2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 186-295; COMPND 5 SYNONYM: EBNA1-BINDING PROTEIN HOMOLOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RIBOSOME BIOGENESIS PROTEIN BRX1; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 26-259; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: EBP2, YKL172W, YKL636; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: BRX1, YOL077C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BRIX DOMAIN, PRE-60S, PRE-RIBOSOME, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR S.ZHENG,K.YE REVDAT 3 27-MAR-24 5Z1G 1 REMARK REVDAT 2 06-FEB-19 5Z1G 1 JRNL REVDAT 1 11-APR-18 5Z1G 0 JRNL AUTH D.ZHOU,X.ZHU,S.ZHENG,D.TAN,M.Q.DONG,K.YE JRNL TITL CRYO-EM STRUCTURE OF AN EARLY PRECURSOR OF LARGE RIBOSOMAL JRNL TITL 2 SUBUNIT REVEALS A HALF-ASSEMBLED INTERMEDIATE JRNL REF PROTEIN CELL V. 10 120 2019 JRNL REFN ESSN 1674-8018 JRNL PMID 29557065 JRNL DOI 10.1007/S13238-018-0526-7 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 33214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9101 - 5.2374 0.99 2812 150 0.2129 0.2388 REMARK 3 2 5.2374 - 4.1634 0.97 2705 134 0.1766 0.2192 REMARK 3 3 4.1634 - 3.6389 0.69 1867 107 0.2448 0.3177 REMARK 3 4 3.6389 - 3.3070 0.98 2692 153 0.2231 0.3234 REMARK 3 5 3.3070 - 3.0705 1.00 2699 156 0.2275 0.2819 REMARK 3 6 3.0705 - 2.8897 1.00 2725 125 0.2413 0.2961 REMARK 3 7 2.8897 - 2.7452 1.00 2714 144 0.2391 0.3739 REMARK 3 8 2.7452 - 2.6258 0.99 2672 144 0.2496 0.3176 REMARK 3 9 2.6258 - 2.5248 0.99 2642 155 0.2551 0.3149 REMARK 3 10 2.5248 - 2.4378 0.99 2706 148 0.2645 0.3657 REMARK 3 11 2.4378 - 2.3616 0.99 2684 134 0.2601 0.3355 REMARK 3 12 2.3616 - 2.2942 0.96 2616 130 0.2778 0.3940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5268 REMARK 3 ANGLE : 1.091 7102 REMARK 3 CHIRALITY : 0.065 770 REMARK 3 PLANARITY : 0.006 910 REMARK 3 DIHEDRAL : 18.228 3216 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-17. REMARK 100 THE DEPOSITION ID IS D_1300006285. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.294 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, PH 5.5 AND 1.8M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.67650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 186 REMARK 465 VAL A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 THR A 194 REMARK 465 GLU A 294 REMARK 465 GLU A 295 REMARK 465 ASP B 66 REMARK 465 THR B 67 REMARK 465 LYS B 68 REMARK 465 LYS B 69 REMARK 465 SER B 196 REMARK 465 THR B 197 REMARK 465 LYS B 198 REMARK 465 ASN B 199 REMARK 465 LYS B 200 REMARK 465 GLU B 201 REMARK 465 GLU B 202 REMARK 465 TYR B 203 REMARK 465 GLU B 204 REMARK 465 ASP B 205 REMARK 465 GLY B 206 REMARK 465 GLU B 207 REMARK 465 GLU B 208 REMARK 465 ASP B 209 REMARK 465 ALA B 256 REMARK 465 ALA B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 ASP C 186 REMARK 465 VAL C 187 REMARK 465 VAL C 188 REMARK 465 PRO C 189 REMARK 465 HIS C 190 REMARK 465 HIS C 191 REMARK 465 LYS C 192 REMARK 465 LEU C 193 REMARK 465 THR C 194 REMARK 465 GLU C 294 REMARK 465 GLU C 295 REMARK 465 ASP D 66 REMARK 465 THR D 67 REMARK 465 LYS D 68 REMARK 465 LYS D 69 REMARK 465 SER D 196 REMARK 465 THR D 197 REMARK 465 LYS D 198 REMARK 465 ASN D 199 REMARK 465 LYS D 200 REMARK 465 GLU D 201 REMARK 465 GLU D 202 REMARK 465 TYR D 203 REMARK 465 GLU D 204 REMARK 465 ASP D 205 REMARK 465 GLY D 206 REMARK 465 GLU D 207 REMARK 465 GLU D 208 REMARK 465 ASP D 209 REMARK 465 ALA D 256 REMARK 465 ALA D 257 REMARK 465 GLU D 258 REMARK 465 GLU D 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO D 164 O HOH D 401 2.02 REMARK 500 O PRO B 164 O HOH B 301 2.08 REMARK 500 OG SER B 53 O HOH B 302 2.13 REMARK 500 O HOH D 481 O HOH D 489 2.13 REMARK 500 O HOH B 381 O HOH B 387 2.14 REMARK 500 OE2 GLU C 277 O HOH C 301 2.14 REMARK 500 OD2 ASP D 70 O HOH D 402 2.15 REMARK 500 O HOH D 412 O HOH D 423 2.15 REMARK 500 NH2 ARG B 44 OE2 GLU B 122 2.16 REMARK 500 N LYS A 234 O HOH A 301 2.16 REMARK 500 O HOH C 348 O HOH C 351 2.16 REMARK 500 O ASN D 29 O HOH D 401 2.16 REMARK 500 O HOH B 391 O HOH B 396 2.17 REMARK 500 O HOH B 365 O HOH B 377 2.18 REMARK 500 NZ LYS C 287 O HOH C 302 2.18 REMARK 500 NH2 ARG D 60 O HOH D 403 2.19 REMARK 500 O HOH D 408 O HOH D 493 2.19 REMARK 500 OG SER A 225 O HOH A 302 2.19 REMARK 500 O HOH A 342 O HOH A 349 2.19 REMARK 500 OE1 GLU A 241 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 101 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 LEU B 225 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU D 225 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 196 61.20 60.67 REMARK 500 HIS A 232 -7.19 77.32 REMARK 500 PHE A 268 -70.55 -109.77 REMARK 500 HIS B 94 18.57 59.95 REMARK 500 GLN B 95 -27.37 -156.62 REMARK 500 GLU B 122 151.72 -49.42 REMARK 500 ALA B 166 135.35 -37.37 REMARK 500 LYS B 168 -4.73 81.34 REMARK 500 PHE B 172 149.32 72.11 REMARK 500 GLN B 254 57.03 -91.57 REMARK 500 THR C 229 40.73 -68.50 REMARK 500 ILE C 236 -31.18 -37.27 REMARK 500 GLN D 95 -33.47 -145.10 REMARK 500 PRO D 108 -169.96 -78.38 REMARK 500 ASP D 121 -36.20 -37.37 REMARK 500 PHE D 172 150.55 80.87 REMARK 500 ASP D 184 51.21 39.04 REMARK 500 GLN D 254 -18.12 -46.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 230 GLU A 231 140.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 359 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 301 DBREF 5Z1G A 186 295 UNP P36049 EBP2_YEAST 186 295 DBREF 5Z1G B 26 259 UNP Q08235 BRX1_YEAST 26 259 DBREF 5Z1G C 186 295 UNP P36049 EBP2_YEAST 186 295 DBREF 5Z1G D 26 259 UNP Q08235 BRX1_YEAST 26 259 SEQRES 1 A 110 ASP VAL VAL PRO HIS HIS LYS LEU THR VAL ASN ASN THR SEQRES 2 A 110 LYS ALA MET LYS HIS ALA LEU GLU ARG VAL GLN LEU PRO SEQRES 3 A 110 TRP LYS LYS HIS SER PHE GLN GLU HIS GLN SER VAL THR SEQRES 4 A 110 SER GLU THR ASN THR ASP GLU HIS ILE LYS ASP ILE TYR SEQRES 5 A 110 ASP ASP THR GLU ARG GLU LEU ALA PHE TYR LYS GLN SER SEQRES 6 A 110 LEU ASP ALA VAL LEU VAL ALA ARG ASP GLU LEU LYS ARG SEQRES 7 A 110 LEU LYS VAL PRO PHE LYS ARG PRO LEU ASP TYR PHE ALA SEQRES 8 A 110 GLU MET VAL LYS SER ASP GLU HIS MET ASP LYS ILE LYS SEQRES 9 A 110 GLY LYS LEU ILE GLU GLU SEQRES 1 B 234 GLN PHE MET ASN LYS GLN ARG THR LEU LEU ILE SER SER SEQRES 2 B 234 ARG GLY VAL ASN TYR ARG HIS ARG HIS LEU ILE GLN ASP SEQRES 3 B 234 LEU SER GLY LEU LEU PRO HIS SER ARG LYS GLU PRO LYS SEQRES 4 B 234 LEU ASP THR LYS LYS ASP LEU GLN GLN LEU ASN GLU ILE SEQRES 5 B 234 ALA GLU LEU TYR ASN CYS ASN ASN VAL LEU PHE PHE GLU SEQRES 6 B 234 ALA ARG LYS HIS GLN ASP LEU TYR LEU TRP LEU SER LYS SEQRES 7 B 234 PRO PRO ASN GLY PRO THR ILE LYS PHE TYR ILE GLN ASN SEQRES 8 B 234 LEU HIS THR MET ASP GLU LEU ASN PHE THR GLY ASN CYS SEQRES 9 B 234 LEU LYS GLY SER ARG PRO VAL LEU SER PHE ASP GLN ARG SEQRES 10 B 234 PHE GLU SER SER PRO HIS TYR GLN LEU ILE LYS GLU LEU SEQRES 11 B 234 LEU VAL HIS ASN PHE GLY VAL PRO PRO ASN ALA ARG LYS SEQRES 12 B 234 SER LYS PRO PHE ILE ASP HIS VAL MET SER PHE SER ILE SEQRES 13 B 234 VAL ASP ASP LYS ILE TRP VAL ARG THR TYR GLU ILE SER SEQRES 14 B 234 HIS SER THR LYS ASN LYS GLU GLU TYR GLU ASP GLY GLU SEQRES 15 B 234 GLU ASP ILE SER LEU VAL GLU ILE GLY PRO ARG PHE VAL SEQRES 16 B 234 MET THR VAL ILE LEU ILE LEU GLU GLY SER PHE GLY GLY SEQRES 17 B 234 PRO LYS ILE TYR GLU ASN LYS GLN TYR VAL SER PRO ASN SEQRES 18 B 234 VAL VAL ARG ALA GLN ILE LYS GLN GLN ALA ALA GLU GLU SEQRES 1 C 110 ASP VAL VAL PRO HIS HIS LYS LEU THR VAL ASN ASN THR SEQRES 2 C 110 LYS ALA MET LYS HIS ALA LEU GLU ARG VAL GLN LEU PRO SEQRES 3 C 110 TRP LYS LYS HIS SER PHE GLN GLU HIS GLN SER VAL THR SEQRES 4 C 110 SER GLU THR ASN THR ASP GLU HIS ILE LYS ASP ILE TYR SEQRES 5 C 110 ASP ASP THR GLU ARG GLU LEU ALA PHE TYR LYS GLN SER SEQRES 6 C 110 LEU ASP ALA VAL LEU VAL ALA ARG ASP GLU LEU LYS ARG SEQRES 7 C 110 LEU LYS VAL PRO PHE LYS ARG PRO LEU ASP TYR PHE ALA SEQRES 8 C 110 GLU MET VAL LYS SER ASP GLU HIS MET ASP LYS ILE LYS SEQRES 9 C 110 GLY LYS LEU ILE GLU GLU SEQRES 1 D 234 GLN PHE MET ASN LYS GLN ARG THR LEU LEU ILE SER SER SEQRES 2 D 234 ARG GLY VAL ASN TYR ARG HIS ARG HIS LEU ILE GLN ASP SEQRES 3 D 234 LEU SER GLY LEU LEU PRO HIS SER ARG LYS GLU PRO LYS SEQRES 4 D 234 LEU ASP THR LYS LYS ASP LEU GLN GLN LEU ASN GLU ILE SEQRES 5 D 234 ALA GLU LEU TYR ASN CYS ASN ASN VAL LEU PHE PHE GLU SEQRES 6 D 234 ALA ARG LYS HIS GLN ASP LEU TYR LEU TRP LEU SER LYS SEQRES 7 D 234 PRO PRO ASN GLY PRO THR ILE LYS PHE TYR ILE GLN ASN SEQRES 8 D 234 LEU HIS THR MET ASP GLU LEU ASN PHE THR GLY ASN CYS SEQRES 9 D 234 LEU LYS GLY SER ARG PRO VAL LEU SER PHE ASP GLN ARG SEQRES 10 D 234 PHE GLU SER SER PRO HIS TYR GLN LEU ILE LYS GLU LEU SEQRES 11 D 234 LEU VAL HIS ASN PHE GLY VAL PRO PRO ASN ALA ARG LYS SEQRES 12 D 234 SER LYS PRO PHE ILE ASP HIS VAL MET SER PHE SER ILE SEQRES 13 D 234 VAL ASP ASP LYS ILE TRP VAL ARG THR TYR GLU ILE SER SEQRES 14 D 234 HIS SER THR LYS ASN LYS GLU GLU TYR GLU ASP GLY GLU SEQRES 15 D 234 GLU ASP ILE SER LEU VAL GLU ILE GLY PRO ARG PHE VAL SEQRES 16 D 234 MET THR VAL ILE LEU ILE LEU GLU GLY SER PHE GLY GLY SEQRES 17 D 234 PRO LYS ILE TYR GLU ASN LYS GLN TYR VAL SER PRO ASN SEQRES 18 D 234 VAL VAL ARG ALA GLN ILE LYS GLN GLN ALA ALA GLU GLU HET SO4 D 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *308(H2 O) HELIX 1 AA1 ASN A 197 GLN A 209 1 13 HELIX 2 AA2 PRO A 211 HIS A 215 5 5 HELIX 3 AA3 SER A 216 HIS A 220 5 5 HELIX 4 AA4 ASP A 238 LEU A 264 1 27 HELIX 5 AA5 SER A 281 LYS A 289 1 9 HELIX 6 AA6 ASN B 42 LEU B 56 1 15 HELIX 7 AA7 GLN B 72 TYR B 81 1 10 HELIX 8 AA8 GLN B 141 SER B 145 5 5 HELIX 9 AA9 SER B 146 GLY B 161 1 16 HELIX 10 AB1 SER B 244 GLN B 254 1 11 HELIX 11 AB2 ASN C 197 GLN C 209 1 13 HELIX 12 AB3 PRO C 211 HIS C 215 5 5 HELIX 13 AB4 SER C 216 HIS C 220 5 5 HELIX 14 AB5 ASP C 238 LEU C 264 1 27 HELIX 15 AB6 SER C 281 LYS C 289 1 9 HELIX 16 AB7 ASN D 42 LEU D 56 1 15 HELIX 17 AB8 GLN D 72 TYR D 81 1 10 HELIX 18 AB9 GLN D 141 SER D 145 5 5 HELIX 19 AC1 SER D 146 GLY D 161 1 16 HELIX 20 AC2 SER D 244 GLN D 254 1 11 SHEET 1 AA1 6 SER A 222 THR A 224 0 SHEET 2 AA1 6 VAL D 136 PHE D 139 1 O LEU D 137 N VAL A 223 SHEET 3 AA1 6 HIS D 175 VAL D 182 1 O MET D 177 N VAL D 136 SHEET 4 AA1 6 LYS D 185 SER D 194 -1 O TRP D 187 N SER D 180 SHEET 5 AA1 6 ARG D 218 LEU D 227 -1 O MET D 221 N ILE D 186 SHEET 6 AA1 6 SER D 211 GLU D 214 0 SHEET 1 AA2 8 SER D 59 LYS D 61 0 SHEET 2 AA2 8 THR D 33 SER D 37 1 N THR D 33 O ARG D 60 SHEET 3 AA2 8 ASN D 85 ARG D 92 1 O LEU D 87 N LEU D 34 SHEET 4 AA2 8 ASP D 96 SER D 102 -1 O TYR D 98 N GLU D 90 SHEET 5 AA2 8 THR D 109 HIS D 118 -1 O ILE D 110 N LEU D 101 SHEET 6 AA2 8 ARG D 218 LEU D 227 -1 O ILE D 224 N LYS D 111 SHEET 7 AA2 8 LYS D 185 SER D 194 -1 N ILE D 186 O MET D 221 SHEET 8 AA2 8 LYS D 235 GLU D 238 0 SHEET 1 AA3 8 SER B 59 LYS B 61 0 SHEET 2 AA3 8 THR B 33 SER B 37 1 N LEU B 35 O ARG B 60 SHEET 3 AA3 8 ASN B 85 ARG B 92 1 O LEU B 87 N LEU B 34 SHEET 4 AA3 8 ASP B 96 SER B 102 -1 O TRP B 100 N PHE B 88 SHEET 5 AA3 8 THR B 109 HIS B 118 -1 O ILE B 110 N LEU B 101 SHEET 6 AA3 8 ARG B 218 LEU B 227 -1 O ARG B 218 N HIS B 118 SHEET 7 AA3 8 LYS B 185 SER B 194 -1 N ILE B 186 O MET B 221 SHEET 8 AA3 8 LYS B 235 GLU B 238 0 SHEET 1 AA4 6 SER B 211 GLU B 214 0 SHEET 2 AA4 6 LYS B 185 SER B 194 -1 N GLU B 192 O VAL B 213 SHEET 3 AA4 6 ARG B 218 LEU B 227 -1 O MET B 221 N ILE B 186 SHEET 4 AA4 6 HIS B 175 VAL B 182 0 SHEET 5 AA4 6 VAL B 136 PHE B 139 1 N SER B 138 O PHE B 179 SHEET 6 AA4 6 SER C 222 THR C 224 1 O VAL C 223 N LEU B 137 CISPEP 1 PRO B 104 PRO B 105 0 3.67 CISPEP 2 GLY B 107 PRO B 108 0 0.37 CISPEP 3 PRO B 164 ASN B 165 0 -8.08 CISPEP 4 GLY B 216 PRO B 217 0 2.03 CISPEP 5 PRO D 104 PRO D 105 0 2.31 CISPEP 6 GLY D 107 PRO D 108 0 1.89 CISPEP 7 PRO D 164 ASN D 165 0 -21.41 CISPEP 8 GLY D 216 PRO D 217 0 -3.87 SITE 1 AC1 7 ARG A 242 ASN D 116 HIS D 118 TRP D 187 SITE 2 AC1 7 ARG D 189 ARG D 218 HOH D 415 CRYST1 80.934 47.353 100.695 90.00 94.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012356 0.000000 0.000885 0.00000 SCALE2 0.000000 0.021118 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009956 0.00000