HEADER OXIDOREDUCTASE 28-DEC-17 5Z22 TITLE CRYSTAL STRUCTURE OF LACCASE FROM CERRENA SP. RSD1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CERRENA SP. RSD1; SOURCE 3 ORGANISM_TAXID: 90311 KEYWDS LACCASE, COPPER-DEPENDENT ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,M.H.WU,T.H.HO,A.H.J.WANG REVDAT 4 22-NOV-23 5Z22 1 REMARK REVDAT 3 12-AUG-20 5Z22 1 JRNL HETSYN REVDAT 2 29-JUL-20 5Z22 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 30-JAN-19 5Z22 0 JRNL AUTH M.H.WU,M.C.LIN,C.C.LEE,S.M.YU,A.H.J.WANG,T.D.HO JRNL TITL ENHANCEMENT OF LACCASE ACTIVITY BY PRE-INCUBATION WITH JRNL TITL 2 ORGANIC SOLVENTS. JRNL REF SCI REP V. 9 9754 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 31278318 JRNL DOI 10.1038/S41598-019-45118-X REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 85148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 326 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 579 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3908 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3586 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5363 ; 1.338 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8241 ; 0.903 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.520 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;35.297 ;24.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;10.901 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 617 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4498 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 904 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1975 ; 1.131 ; 1.826 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1974 ; 1.122 ; 1.826 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2467 ; 1.409 ; 2.751 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2468 ; 1.410 ; 2.751 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1933 ; 1.381 ; 1.997 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1932 ; 1.370 ; 1.996 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2897 ; 1.693 ; 2.939 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4743 ; 2.852 ;17.038 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4422 ; 2.447 ;15.924 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7494 ; 1.463 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 167 ;21.606 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7806 ; 7.626 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5Z1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M ALMMONIUM SULFATE, PH8.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.39550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.70450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.70450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.59325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.70450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.70450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.19775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.70450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.70450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.59325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.70450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.70450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.19775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.39550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1169 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 131.28 73.03 REMARK 500 SER A 113 -135.33 46.16 REMARK 500 ASP A 206 -72.04 -159.34 REMARK 500 LYS A 298 62.52 -152.05 REMARK 500 VAL A 416 -65.10 -99.35 REMARK 500 ASP A 417 45.01 -142.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1179 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 509 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HIS A 396 NE2 170.7 REMARK 620 3 HOH A 889 O 92.6 96.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 510 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 66 ND1 REMARK 620 2 HIS A 109 NE2 142.5 REMARK 620 3 HIS A 450 NE2 107.7 108.7 REMARK 620 4 OXY A 512 O2 103.4 92.2 79.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 511 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 398 NE2 113.2 REMARK 620 3 HIS A 448 NE2 118.6 122.0 REMARK 620 4 OXY A 512 O1 90.2 107.8 96.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 508 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 393 ND1 REMARK 620 2 CYS A 449 SG 121.6 REMARK 620 3 HIS A 454 ND1 103.0 135.1 REMARK 620 N 1 2 DBREF 5Z22 A 1 495 PDB 5Z22 5Z22 1 495 SEQRES 1 A 495 ALA VAL GLY PRO VAL THR ASP ILE HIS ILE VAL ASN LYS SEQRES 2 A 495 ASP ILE ALA PRO ASP GLY PHE SER ARG PRO SER VAL LEU SEQRES 3 A 495 ALA GLY GLY THR PHE PRO GLY PRO LEU ILE THR GLY GLN SEQRES 4 A 495 LYS GLY ASP ASN PHE LYS LEU ASN VAL VAL ASP ASP LEU SEQRES 5 A 495 THR ASP ALA SER MET LEU LYS SER THR SER ILE HIS TRP SEQRES 6 A 495 HIS GLY PHE PHE GLN LYS GLY THR ASN TRP ALA ASP GLY SEQRES 7 A 495 PRO ALA PHE VAL ASN GLN CYS PRO ILE SER THR GLY ASN SEQRES 8 A 495 SER PHE LEU TYR ASN PHE GLN VAL PRO ASP GLN ALA GLY SEQRES 9 A 495 THR TYR TRP TYR HIS SER HIS LEU SER THR GLN TYR CYS SEQRES 10 A 495 ASP GLY LEU ARG GLY ALA PHE VAL VAL TYR ASP PRO THR SEQRES 11 A 495 ASP PRO HIS LYS ALA LEU TYR ASP VAL ASP ASP GLU SER SEQRES 12 A 495 THR VAL ILE THR LEU ALA ASP TRP TYR HIS THR LEU ALA SEQRES 13 A 495 ARG GLN ILE VAL GLY VAL ALA ILE ALA ASP THR THR LEU SEQRES 14 A 495 ILE ASN GLY LEU GLY ARG ASN THR ASN GLY PRO ALA ASP SEQRES 15 A 495 ALA ALA LEU ALA VAL ILE ASN VAL GLU ALA GLY LYS ARG SEQRES 16 A 495 TYR ARG LEU ARG LEU VAL SER ILE SER CYS ASP PRO ASN SEQRES 17 A 495 TYR VAL PHE SER ILE ASP ASN HIS ASP PHE ASN ILE ILE SEQRES 18 A 495 GLU VAL ASP GLY VAL ASN SER LYS PRO LEU ASN VAL ASP SEQRES 19 A 495 SER ILE GLN ILE PHE ALA GLY GLN ARG TYR SER ALA VAL SEQRES 20 A 495 LEU ASN ALA ASN GLN PRO VAL GLY ASN TYR TRP VAL ARG SEQRES 21 A 495 ALA ASN PRO ASN LEU GLY THR THR GLY PHE THR GLY GLY SEQRES 22 A 495 ILE ASN SER ALA ILE LEU ARG TYR LYS GLY ALA PRO VAL SEQRES 23 A 495 ALA GLU PRO THR THR THR GLN THR THR SER THR LYS PRO SEQRES 24 A 495 LEU GLN GLU PRO ASN LEU ARG PRO LEU VAL SER MET PRO SEQRES 25 A 495 VAL PRO GLY SER ALA THR PRO GLY GLY VAL ASP VAL VAL SEQRES 26 A 495 HIS ASN LEU ILE LEU GLY PHE SER ALA GLY LYS PHE THR SEQRES 27 A 495 ILE ASN GLY ALA ALA PHE THR PRO PRO SER VAL PRO VAL SEQRES 28 A 495 LEU LEU GLN ILE LEU SER GLY THR THR ASN ALA GLN ASP SEQRES 29 A 495 LEU LEU PRO SER GLY SER VAL ILE THR LEU PRO ILE GLY SEQRES 30 A 495 LYS THR ILE GLU LEU THR LEU ALA ALA GLY VAL LEU GLY SEQRES 31 A 495 GLY PRO HIS PRO PHE HIS LEU HIS GLY HIS ASN PHE HIS SEQRES 32 A 495 VAL VAL ARG SER ALA GLY GLN THR THR PRO ASN TYR VAL SEQRES 33 A 495 ASP PRO ILE VAL ARG ASP VAL VAL ASN THR GLY GLY THR SEQRES 34 A 495 GLY ASP ASN VAL THR ILE ARG PHE THR THR ASP ASN PRO SEQRES 35 A 495 GLY PRO TRP PHE LEU HIS CYS HIS ILE ASP TRP HIS LEU SEQRES 36 A 495 GLU ALA GLY PHE ALA VAL VAL PHE ALA GLU GLY VAL ASN SEQRES 37 A 495 GLN THR ASN ALA ALA ASN PRO THR PRO ALA ASP TRP ASN SEQRES 38 A 495 ASN LEU CYS ASN ILE TYR ASN ALA LEU ALA ASP GLY ASP SEQRES 39 A 495 LYS HET NAG B 1 14 HET NAG B 2 14 HET NAG A 503 14 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET GOL A 507 6 HET CU A 508 1 HET CU A 509 1 HET CU A 510 1 HET CU A 511 1 HET OXY A 512 2 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CU COPPER (II) ION HETNAM OXY OXYGEN MOLECULE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 CU 4(CU 2+) FORMUL 12 OXY O2 FORMUL 13 HOH *579(H2 O) HELIX 1 AA1 ASP A 54 LEU A 58 5 5 HELIX 2 AA2 THR A 73 ASP A 77 5 5 HELIX 3 AA3 THR A 114 GLY A 119 5 6 HELIX 4 AA4 HIS A 133 TYR A 137 5 5 HELIX 5 AA5 ASP A 141 SER A 143 5 3 HELIX 6 AA6 LEU A 155 ILE A 159 5 5 HELIX 7 AA7 PHE A 270 ILE A 274 5 5 HELIX 8 AA8 GLN A 301 LEU A 305 5 5 HELIX 9 AA9 PRO A 350 SER A 357 1 8 HELIX 10 AB1 ASN A 361 LEU A 365 5 5 HELIX 11 AB2 ILE A 451 ALA A 457 1 7 HELIX 12 AB3 GLN A 469 ASN A 474 1 6 HELIX 13 AB4 PRO A 477 ALA A 489 1 13 HELIX 14 AB5 ALA A 491 LYS A 495 5 5 SHEET 1 AA1 4 ARG A 22 ALA A 27 0 SHEET 2 AA1 4 VAL A 5 ILE A 15 -1 N VAL A 11 O LEU A 26 SHEET 3 AA1 4 ASN A 43 ASP A 50 1 O VAL A 49 N ILE A 10 SHEET 4 AA1 4 SER A 92 GLN A 98 -1 O TYR A 95 N LEU A 46 SHEET 1 AA2 4 ILE A 36 GLN A 39 0 SHEET 2 AA2 4 ARG A 121 TYR A 127 1 O TYR A 127 N GLY A 38 SHEET 3 AA2 4 GLY A 104 SER A 110 -1 N TYR A 106 O PHE A 124 SHEET 4 AA2 4 ILE A 63 HIS A 66 -1 N HIS A 64 O HIS A 109 SHEET 1 AA3 6 THR A 167 ILE A 170 0 SHEET 2 AA3 6 VAL A 145 TRP A 151 -1 N ALA A 149 O LEU A 169 SHEET 3 AA3 6 ARG A 195 SER A 202 1 O VAL A 201 N ILE A 146 SHEET 4 AA3 6 ARG A 243 ASN A 249 -1 O TYR A 244 N LEU A 200 SHEET 5 AA3 6 PHE A 218 VAL A 223 -1 N ASN A 219 O VAL A 247 SHEET 6 AA3 6 VAL A 226 VAL A 233 -1 O LEU A 231 N ILE A 220 SHEET 1 AA4 5 VAL A 187 VAL A 190 0 SHEET 2 AA4 5 SER A 276 TYR A 281 1 O ILE A 278 N ILE A 188 SHEET 3 AA4 5 ASN A 256 PRO A 263 -1 N TYR A 257 O LEU A 279 SHEET 4 AA4 5 TYR A 209 ILE A 213 -1 N SER A 212 O ARG A 260 SHEET 5 AA4 5 ILE A 236 ILE A 238 -1 O ILE A 236 N PHE A 211 SHEET 1 AA5 5 VAL A 324 ASN A 327 0 SHEET 2 AA5 5 THR A 379 ALA A 385 1 O GLU A 381 N HIS A 326 SHEET 3 AA5 5 ASN A 432 THR A 438 -1 O PHE A 437 N ILE A 380 SHEET 4 AA5 5 PHE A 402 ARG A 406 -1 N HIS A 403 O ARG A 436 SHEET 5 AA5 5 VAL A 420 ARG A 421 -1 O ARG A 421 N PHE A 402 SHEET 1 AA6 2 LEU A 330 SER A 333 0 SHEET 2 AA6 2 LYS A 336 ILE A 339 -1 O THR A 338 N GLY A 331 SHEET 1 AA7 5 VAL A 371 LEU A 374 0 SHEET 2 AA7 5 ALA A 460 GLU A 465 1 O VAL A 462 N ILE A 372 SHEET 3 AA7 5 GLY A 443 CYS A 449 -1 N TRP A 445 O PHE A 463 SHEET 4 AA7 5 PRO A 394 LEU A 397 -1 N HIS A 396 O HIS A 448 SHEET 5 AA7 5 VAL A 423 ASN A 425 -1 O VAL A 424 N PHE A 395 SSBOND 1 CYS A 85 CYS A 484 1555 1555 2.13 SSBOND 2 CYS A 117 CYS A 205 1555 1555 2.05 LINK ND2 ASN A 432 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 468 C1 NAG A 503 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK NE2 HIS A 64 CU CU A 509 1555 1555 1.95 LINK ND1 HIS A 66 CU CU A 510 1555 1555 2.03 LINK NE2 HIS A 109 CU CU A 510 1555 1555 2.09 LINK NE2 HIS A 111 CU CU A 511 1555 1555 2.14 LINK ND1 HIS A 393 CU CU A 508 1555 1555 2.10 LINK NE2 HIS A 396 CU CU A 509 1555 1555 1.92 LINK NE2 HIS A 398 CU CU A 511 1555 1555 2.03 LINK NE2 HIS A 448 CU CU A 511 1555 1555 2.02 LINK SG CYS A 449 CU CU A 508 1555 1555 2.16 LINK NE2 HIS A 450 CU CU A 510 1555 1555 2.19 LINK ND1 HIS A 454 CU CU A 508 1555 1555 2.07 LINK CU CU A 509 O HOH A 889 1555 1555 2.51 LINK CU CU A 510 O2 OXY A 512 1555 1555 2.01 LINK CU CU A 511 O1 OXY A 512 1555 1555 2.21 CISPEP 1 GLY A 3 PRO A 4 0 8.09 CISPEP 2 PHE A 31 PRO A 32 0 -10.60 CISPEP 3 LEU A 366 PRO A 367 0 6.48 CISPEP 4 GLY A 391 PRO A 392 0 7.03 CRYST1 87.409 87.409 148.791 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011440 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006721 0.00000