HEADER CELL CYCLE 04-JAN-18 5Z2W TITLE CRYSTAL STRUCTURE OF THE BACTERIAL CELL DIVISION PROTEIN FTSQ AND FTSB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSQ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CELL DIVISION PROTEIN FTSB; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FTSQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 GENE: FTSB, AWP75_20790; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL DIVISION, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHOI,H.J.YOON,H.H.LEE REVDAT 3 27-MAR-24 5Z2W 1 REMARK REVDAT 2 16-JAN-19 5Z2W 1 JRNL REVDAT 1 02-JAN-19 5Z2W 0 JRNL AUTH Y.CHOI,J.KIM,H.J.YOON,K.S.JIN,S.RYU,H.H.LEE JRNL TITL STRUCTURAL INSIGHTS INTO THE FTSQ/FTSB/FTSL COMPLEX, A KEY JRNL TITL 2 COMPONENT OF THE DIVISOME. JRNL REF SCI REP V. 8 18061 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30584256 JRNL DOI 10.1038/S41598-018-36001-2 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1966 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.360 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8124 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 0.2M MAGNESIUM CHLORIDE, REMARK 280 0.1M TRIS-HCL PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 48 5.47 -65.50 REMARK 500 ASP A 85 -20.27 72.97 REMARK 500 ARG A 102 -158.29 -76.12 REMARK 500 SER A 104 -13.64 59.72 REMARK 500 LYS A 105 62.47 -101.24 REMARK 500 ASP A 135 -165.59 -127.16 REMARK 500 ARG A 136 53.17 -94.10 REMARK 500 ARG A 148 36.58 73.40 REMARK 500 ASN A 156 -163.88 -74.18 REMARK 500 ASP A 166 70.82 -66.48 REMARK 500 THR A 187 -9.41 -56.32 REMARK 500 SER A 201 -3.28 76.01 REMARK 500 PRO A 209 -178.95 -68.63 REMARK 500 PRO B 300 91.61 -48.03 REMARK 500 ASP B 301 168.86 167.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 299 PRO B 300 -119.96 REMARK 500 PRO B 300 ASP B 301 142.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 DBREF 5Z2W A 4 212 UNP J7Q602 J7Q602_ECOLX 53 261 DBREF1 5Z2W B 272 306 UNP A0A1Q6B6Y5_ECOLX DBREF2 5Z2W B A0A1Q6B6Y5 61 95 SEQRES 1 A 209 GLN ARG LEU PRO LEU SER LYS LEU VAL LEU THR GLY GLU SEQRES 2 A 209 ARG HIS TYR THR ARG ASN ASP ASP ILE ARG GLN SER ILE SEQRES 3 A 209 LEU ALA LEU GLY GLU PRO GLY THR PHE MET THR GLN ASP SEQRES 4 A 209 VAL ASN ILE ILE GLN THR GLN ILE GLU GLN ARG LEU PRO SEQRES 5 A 209 TRP ILE LYS GLN VAL SER VAL ARG LYS GLN TRP PRO ASP SEQRES 6 A 209 GLU LEU LYS ILE HIS LEU VAL GLU TYR VAL PRO ILE ALA SEQRES 7 A 209 ARG TRP ASN ASP GLN HIS MET VAL ASP ALA GLU GLY ASN SEQRES 8 A 209 THR PHE SER VAL PRO PRO GLU ARG THR SER LYS GLN VAL SEQRES 9 A 209 LEU PRO MET LEU TYR GLY PRO GLU GLY SER ALA ASN GLU SEQRES 10 A 209 VAL LEU GLN GLY TYR ARG GLU MET GLY GLN MET LEU ALA SEQRES 11 A 209 LYS ASP ARG PHE THR LEU LYS GLU ALA ALA MET THR ALA SEQRES 12 A 209 ARG ARG SER TRP GLN LEU THR LEU ASN ASN ASP ILE LYS SEQRES 13 A 209 LEU ASN LEU GLY ARG GLY ASP THR MET LYS ARG LEU ALA SEQRES 14 A 209 ARG PHE VAL GLU LEU TYR PRO VAL LEU GLN GLN GLN ALA SEQRES 15 A 209 GLN THR ASP GLY LYS ARG ILE SER TYR VAL ASP LEU ARG SEQRES 16 A 209 TYR ASP SER GLY ALA ALA VAL GLY TRP ALA PRO LEU PRO SEQRES 17 A 209 PRO SEQRES 1 B 35 ASN GLY GLY GLN GLU ALA LEU GLU GLU ARG ALA ARG ASN SEQRES 2 B 35 GLU LEU SER MET THR ARG PRO GLY GLU THR PHE TYR ARG SEQRES 3 B 35 LEU VAL PRO ASP ALA SER LYS ARG ALA HET MG A 401 1 HET MG A 402 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) HELIX 1 AA1 ARG A 21 ALA A 31 1 11 HELIX 2 AA2 ASP A 42 LEU A 54 1 13 HELIX 3 AA3 SER A 117 LYS A 134 1 18 HELIX 4 AA4 ASP A 166 THR A 187 1 22 HELIX 5 AA5 GLY B 273 SER B 287 1 15 SHEET 1 AA1 3 LYS A 10 THR A 14 0 SHEET 2 AA1 3 GLU A 69 GLU A 76 1 O LEU A 70 N VAL A 12 SHEET 3 AA1 3 ILE A 57 GLN A 65 -1 N SER A 61 O HIS A 73 SHEET 1 AA210 THR A 95 PHE A 96 0 SHEET 2 AA210 MET A 88 ASP A 90 -1 N MET A 88 O PHE A 96 SHEET 3 AA210 PRO A 79 TRP A 83 -1 N ILE A 80 O VAL A 89 SHEET 4 AA210 MET A 110 TYR A 112 1 O LEU A 111 N ARG A 82 SHEET 5 AA210 GLU A 141 MET A 144 1 O MET A 144 N TYR A 112 SHEET 6 AA210 TRP A 150 THR A 153 -1 O GLN A 151 N ALA A 143 SHEET 7 AA210 LYS A 159 GLY A 163 -1 O LEU A 160 N LEU A 152 SHEET 8 AA210 ARG A 191 ASP A 196 1 O SER A 193 N LYS A 159 SHEET 9 AA210 GLY A 202 ALA A 208 -1 O ALA A 204 N ASP A 196 SHEET 10 AA210 THR B 294 ARG B 297 -1 O TYR B 296 N ALA A 203 CISPEP 1 TRP A 66 PRO A 67 0 9.88 SITE 1 AC1 1 GLU A 127 SITE 1 AC2 5 GLY A 163 ARG A 164 ARG A 170 GLU B 280 SITE 2 AC2 5 ASN B 284 CRYST1 63.557 39.306 73.191 90.00 94.77 90.00 P 1 2 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015734 0.000000 0.001312 0.00000 SCALE2 0.000000 0.025441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013710 0.00000