HEADER BIOSYNTHETIC PROTEIN 05-JAN-18 5Z36 TITLE AN ANTHRAHYDROQUINO-GAMA-PYRONE SYNTHASE TXN09 COMPLEXED WITH PDM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TXNO9; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES BOTTROPENSIS; SOURCE 3 ORGANISM_TAXID: 42235; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS TYPE II POLYKETIDE HETEROCYCLASE, ENZYME MECHANISM, NATURAL PRODUCT, KEYWDS 2 STREPTOMYCES BOTTROPENSIS, BIOSYNTHETIC PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.J.SONG,C.Y.CAO REVDAT 3 15-MAY-24 5Z36 1 REMARK REVDAT 2 14-JUN-23 5Z36 1 REMARK REVDAT 1 12-DEC-18 5Z36 0 JRNL AUTH X.F.HOU,Y.J.SONG,M.ZHANG,W.X.LAN,S.MENG,C.X.WANG,H.X.PAN, JRNL AUTH 2 C.Y.CAO,G.L.TANG JRNL TITL ENZYMOLOGY OF ANTHRAQUINONE-GAMMA-PYRONE RING FORMATION IN JRNL TITL 2 COMPLEX AROMATIC POLYKETIDE BIOSYNTHESIS. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 57 13475 2018 JRNL REFN ESSN 1521-3773 JRNL PMID 30151879 JRNL DOI 10.1002/ANIE.201806729 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, X-PLOR NIH REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006351. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : 60; 60 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 TXN09, 50 MM SODIUM CHLORIDE, 20 REMARK 210 MM SODIUM PHOSPHATE, 10 % V/V REMARK 210 DEUTERATION DMSO, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 2D REMARK 210 FILTERED NOESY; 2D FILTERED REMARK 210 TOCSY; 3D EDITED/FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DD2 REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 41 HZ2 LYS A 136 1.28 REMARK 500 H ASN A 110 O GLY A 114 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 27 -63.48 -98.25 REMARK 500 1 ARG A 28 62.65 -154.81 REMARK 500 1 SER A 36 -58.88 172.81 REMARK 500 1 PHE A 52 172.47 160.27 REMARK 500 1 THR A 65 -145.91 -59.52 REMARK 500 1 PRO A 78 -90.28 -48.86 REMARK 500 1 HIS A 79 41.53 -163.70 REMARK 500 1 HIS A 125 -16.15 -45.59 REMARK 500 1 ASP A 139 102.22 79.72 REMARK 500 1 GLU A 145 163.04 -46.25 REMARK 500 2 SER A 27 -68.40 -94.56 REMARK 500 2 ARG A 28 70.96 -161.71 REMARK 500 2 ALA A 45 -47.56 -133.29 REMARK 500 2 PHE A 52 175.19 160.49 REMARK 500 2 THR A 65 -151.36 -59.95 REMARK 500 2 PRO A 78 -88.06 -42.85 REMARK 500 2 HIS A 79 43.10 -167.49 REMARK 500 2 HIS A 90 39.85 -87.75 REMARK 500 2 HIS A 125 -16.28 -46.18 REMARK 500 2 ASP A 129 -145.22 47.39 REMARK 500 2 ASP A 139 104.73 75.21 REMARK 500 2 GLU A 145 -178.47 -45.65 REMARK 500 3 ARG A 28 63.94 -164.97 REMARK 500 3 PHE A 52 176.80 165.24 REMARK 500 3 THR A 65 -147.12 -59.25 REMARK 500 3 PRO A 77 153.08 -29.71 REMARK 500 3 PRO A 78 76.37 -29.15 REMARK 500 3 HIS A 79 -40.78 -175.86 REMARK 500 3 HIS A 125 -11.87 -45.64 REMARK 500 3 ASP A 139 107.25 81.31 REMARK 500 3 GLU A 145 -171.32 -50.18 REMARK 500 4 ARG A 28 72.53 -169.23 REMARK 500 4 PHE A 52 173.37 159.18 REMARK 500 4 THR A 65 -146.85 -59.82 REMARK 500 4 PRO A 78 -79.86 -45.49 REMARK 500 4 HIS A 79 43.29 -176.26 REMARK 500 4 HIS A 125 -16.62 -45.53 REMARK 500 4 ASP A 139 107.91 61.52 REMARK 500 4 PRO A 143 -70.64 -78.37 REMARK 500 4 GLU A 145 -179.64 55.64 REMARK 500 5 ARG A 28 65.27 -156.28 REMARK 500 5 ALA A 45 -36.04 -133.89 REMARK 500 5 PHE A 52 -179.78 157.71 REMARK 500 5 THR A 65 -147.76 -60.74 REMARK 500 5 PRO A 78 -78.40 -47.81 REMARK 500 5 HIS A 79 36.17 -176.87 REMARK 500 5 HIS A 125 -12.80 -46.44 REMARK 500 5 ASP A 139 109.72 62.01 REMARK 500 5 GLU A 145 -176.70 -48.87 REMARK 500 6 ARG A 28 53.38 -176.82 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 969 A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36151 RELATED DB: BMRB REMARK 900 AN ANTHRAHYDROQUINO-GAMA-PYRONE SYNTHASE TXN09 COMPLEXED WITH PDM DBREF1 5Z36 A 1 154 UNP A0A0K1H313_9ACTN DBREF2 5Z36 A A0A0K1H313 1 154 SEQRES 1 A 154 MET PRO GLU GLU ILE PRO ASP VAL ARG LYS SER VAL VAL SEQRES 2 A 154 VAL ALA ALA SER VAL GLU HIS CYS PHE GLU VAL PHE THR SEQRES 3 A 154 SER ARG PRO ALA ASP TRP TRP PRO PRO SER HIS VAL LEU SEQRES 4 A 154 VAL LYS LYS GLU ARG ALA GLY LEU ALA PHE GLU PRO PHE SEQRES 5 A 154 VAL GLY GLY ARG TYR TYR GLU TRP ASP ILE ASP GLY THR SEQRES 6 A 154 GLU ILE VAL TRP GLY ARG ILE LEU GLU TRP ASP PRO PRO SEQRES 7 A 154 HIS ARG LEU ALA MET THR TRP ARG ILE ASP GLY HIS TRP SEQRES 8 A 154 GLN SER VAL PRO ASP ASP ASP ARG ALA SER GLU ILE GLU SEQRES 9 A 154 VAL ASP PHE VAL PRO ASN GLY SER GLY GLY THR ARG VAL SEQRES 10 A 154 GLU LEU ALA HIS VAL LYS LEU HIS ARG HIS GLY ASP GLY SEQRES 11 A 154 ALA TRP ASN ILE HIS LYS ALA LEU ASP GLY PRO SER PRO SEQRES 12 A 154 GLY GLU THR LEU ALA ARG PHE ALA ASN VAL ILE HET 969 A 201 46 HETNAM 969 11-HYDROXY-2-[(2S)-2-HYDROXYBUTAN-2-YL]-5-METHYL-4H- HETNAM 2 969 ANTHRA[1,2-B]PYRAN-4,7,12-TRIONE FORMUL 2 969 C22 H18 O6 HELIX 1 AA1 SER A 17 ARG A 28 1 12 HELIX 2 AA2 ARG A 28 TRP A 33 1 6 HELIX 3 AA3 LYS A 123 HIS A 127 5 5 HELIX 4 AA4 GLY A 130 LEU A 138 1 9 HELIX 5 AA5 GLU A 145 ILE A 154 1 10 SHEET 1 AA1 5 VAL A 8 VAL A 14 0 SHEET 2 AA1 5 GLY A 114 HIS A 121 -1 O THR A 115 N VAL A 14 SHEET 3 AA1 5 GLU A 102 ASN A 110 -1 N ASN A 110 O GLY A 114 SHEET 4 AA1 5 ARG A 80 THR A 84 -1 N MET A 83 O ILE A 103 SHEET 5 AA1 5 GLU A 74 ASP A 76 -1 N ASP A 76 O ARG A 80 SHEET 1 AA2 3 ARG A 44 PHE A 49 0 SHEET 2 AA2 3 ARG A 56 ASP A 61 -1 O TRP A 60 N ALA A 45 SHEET 3 AA2 3 GLU A 66 ARG A 71 -1 O ILE A 67 N GLU A 59 SITE 1 AC1 10 VAL A 8 LYS A 10 SER A 11 VAL A 12 SITE 2 AC1 10 VAL A 117 LEU A 119 GLU A 145 THR A 146 SITE 3 AC1 10 LEU A 147 PHE A 150 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1