HEADER APOPTOSIS/INBITITOR 18-JAN-18 5Z5K TITLE STRUCTURE OF THE DCC-DRAXIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NETRIN RECEPTOR DCC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TUMOR SUPPRESSOR PROTEIN DCC; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DRAXIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: DORSAL INHIBITORY AXON GUIDANCE PROTEIN,DORSAL REPULSIVE COMPND 10 AXON GUIDANCE PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DCC; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: DRAXIN, DRAXIN; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS AXON GUIDANCE, APOPTOSIS-INBITITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,J.XIAO,J.WANG REVDAT 3 10-MAR-21 5Z5K 1 AUTHOR HETSYN REVDAT 2 29-JUL-20 5Z5K 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 20-JUN-18 5Z5K 0 JRNL AUTH Y.LIU,T.BHOWMICK,Y.LIU,X.GAO,H.D.T.MERTENS,D.I.SVERGUN, JRNL AUTH 2 J.XIAO,Y.ZHANG,J.H.WANG,R.MEIJERS JRNL TITL STRUCTURAL BASIS FOR DRAXIN-MODULATED AXON GUIDANCE AND JRNL TITL 2 FASCICULATION BY NETRIN-1 THROUGH DCC. JRNL REF NEURON V. 97 1261 2018 JRNL REFN ISSN 1097-4199 JRNL PMID 29503192 JRNL DOI 10.1016/J.NEURON.2018.02.010 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3774 - 5.5385 0.99 2620 142 0.1805 0.2166 REMARK 3 2 5.5385 - 4.3987 1.00 2609 135 0.1727 0.1849 REMARK 3 3 4.3987 - 3.8435 1.00 2588 134 0.1854 0.2304 REMARK 3 4 3.8435 - 3.4924 1.00 2595 131 0.2188 0.2817 REMARK 3 5 3.4924 - 3.2422 1.00 2604 137 0.2372 0.2627 REMARK 3 6 3.2422 - 3.0512 1.00 2588 139 0.2430 0.2740 REMARK 3 7 3.0512 - 2.8985 1.00 2584 137 0.2684 0.2948 REMARK 3 8 2.8985 - 2.7723 1.00 2556 133 0.2750 0.3463 REMARK 3 9 2.7723 - 2.6657 1.00 2601 133 0.2941 0.3178 REMARK 3 10 2.6657 - 2.5737 1.00 2574 130 0.2973 0.3206 REMARK 3 11 2.5737 - 2.4933 0.95 2463 134 0.3167 0.3739 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3620 REMARK 3 ANGLE : 0.581 4909 REMARK 3 CHIRALITY : 0.043 557 REMARK 3 PLANARITY : 0.004 637 REMARK 3 DIHEDRAL : 14.180 2202 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 28.0904 128.8253 -5.9251 REMARK 3 T TENSOR REMARK 3 T11: 0.4612 T22: 0.5281 REMARK 3 T33: 0.4488 T12: -0.0387 REMARK 3 T13: -0.0031 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1783 L22: 0.5870 REMARK 3 L33: 1.4112 L12: -0.1747 REMARK 3 L13: 0.4675 L23: -0.9308 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: 0.0519 S13: -0.0644 REMARK 3 S21: -0.0783 S22: -0.0604 S23: -0.0375 REMARK 3 S31: 0.0726 S32: 0.2378 S33: -0.0110 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z5K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29938 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.493 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.91800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, KCL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.84400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.42200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.13300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.71100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.55500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 299 O5 NAG E 1 1.70 REMARK 500 O SER A 47 O HOH A 601 1.95 REMARK 500 O HOH A 630 O HOH A 632 2.05 REMARK 500 O4 NAG E 1 O5 NAG E 2 2.12 REMARK 500 O ASP A 256 O HOH A 602 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 101 70.38 56.16 REMARK 500 LEU A 282 75.82 -66.84 REMARK 500 SER A 284 159.94 64.21 REMARK 500 LYS A 285 11.37 56.91 REMARK 500 LYS A 286 -59.37 -155.67 REMARK 500 SER A 293 -36.49 -137.08 REMARK 500 ASN A 299 75.85 45.35 REMARK 500 LYS A 315 -124.80 59.10 REMARK 500 SER A 345 -8.12 75.68 REMARK 500 SER A 383 -6.72 -141.37 REMARK 500 HIS B 289 74.36 -162.15 REMARK 500 ASN B 294 17.79 57.33 REMARK 500 PHE B 313 85.70 59.32 REMARK 500 ASN B 316 77.15 56.32 REMARK 500 LYS B 323 127.05 43.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 5Z5K A 39 418 UNP Q63155 DCC_RAT 39 418 DBREF 5Z5K B 264 329 UNP D3ZDG4 D3ZDG4_RAT 264 329 SEQRES 1 A 380 SER LEU HIS PHE VAL SER GLU PRO SER ASP ALA VAL THR SEQRES 2 A 380 MET ARG GLY GLY ASN VAL LEU LEU ASN CYS SER ALA GLU SEQRES 3 A 380 SER ASP ARG GLY VAL PRO VAL ILE LYS TRP LYS LYS ASP SEQRES 4 A 380 GLY LEU ILE LEU ALA LEU GLY MET ASP ASP ARG LYS GLN SEQRES 5 A 380 GLN LEU PRO ASN GLY SER LEU LEU ILE GLN ASN ILE LEU SEQRES 6 A 380 HIS SER ARG HIS HIS LYS PRO ASP GLU GLY LEU TYR GLN SEQRES 7 A 380 CYS GLU ALA SER LEU GLY ASP SER GLY SER ILE ILE SER SEQRES 8 A 380 ARG THR ALA LYS VAL MET VAL ALA GLY PRO LEU ARG PHE SEQRES 9 A 380 LEU SER GLN THR GLU SER ILE THR ALA PHE MET GLY ASP SEQRES 10 A 380 THR VAL LEU LEU LYS CYS GLU VAL ILE GLY ASP PRO MET SEQRES 11 A 380 PRO THR ILE HIS TRP GLN LYS ASN GLN GLN ASP LEU ASN SEQRES 12 A 380 PRO ILE PRO GLY ASP SER ARG VAL VAL VAL LEU PRO SER SEQRES 13 A 380 GLY ALA LEU GLN ILE SER ARG LEU GLN PRO GLY ASP SER SEQRES 14 A 380 GLY VAL TYR ARG CYS SER ALA ARG ASN PRO ALA SER THR SEQRES 15 A 380 ARG THR GLY ASN GLU ALA GLU VAL ARG ILE LEU SER ASP SEQRES 16 A 380 PRO GLY LEU HIS ARG GLN LEU TYR PHE LEU GLN ARG PRO SEQRES 17 A 380 SER ASN VAL ILE ALA ILE GLU GLY LYS ASP ALA VAL LEU SEQRES 18 A 380 GLU CYS CYS VAL SER GLY TYR PRO PRO PRO SER PHE THR SEQRES 19 A 380 TRP LEU ARG GLY GLU GLU VAL ILE GLN LEU ARG SER LYS SEQRES 20 A 380 LYS TYR SER LEU LEU GLY GLY SER ASN LEU LEU ILE SER SEQRES 21 A 380 ASN VAL THR ASP ASP ASP SER GLY THR TYR THR CYS VAL SEQRES 22 A 380 VAL THR TYR LYS ASN GLU ASN ILE SER ALA SER ALA GLU SEQRES 23 A 380 LEU THR VAL LEU VAL PRO PRO TRP PHE LEU ASN HIS PRO SEQRES 24 A 380 SER ASN LEU TYR ALA TYR GLU SER MET ASP ILE GLU PHE SEQRES 25 A 380 GLU CYS ALA VAL SER GLY LYS PRO VAL PRO THR VAL ASN SEQRES 26 A 380 TRP MET LYS ASN GLY ASP VAL VAL ILE PRO SER ASP TYR SEQRES 27 A 380 PHE GLN ILE VAL GLY GLY SER ASN LEU ARG ILE LEU GLY SEQRES 28 A 380 VAL VAL LYS SER ASP GLU GLY PHE TYR GLN CYS VAL ALA SEQRES 29 A 380 GLU ASN GLU ALA GLY ASN ALA GLN SER SER ALA GLN LEU SEQRES 30 A 380 ILE VAL PRO SEQRES 1 B 66 GLY GLU PRO CYS ASP HIS HIS GLN ASP CYS LEU PRO GLY SEQRES 2 B 66 THR CYS CYS ASP LEU ARG GLU HIS LEU CYS THR PRO HIS SEQRES 3 B 66 ASN ARG GLY LEU ASN ASN LYS CYS PHE ASP ASP CYS MET SEQRES 4 B 66 CYS THR GLU GLY LEU ARG CYS TYR ALA LYS PHE HIS ARG SEQRES 5 B 66 ASN ARG ARG VAL THR ARG ARG LYS GLY ARG CYS VAL GLU SEQRES 6 B 66 PRO HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 507 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 7(C8 H15 N O6) FORMUL 7 HOH *33(H2 O) HELIX 1 AA1 GLY A 122 SER A 124 5 3 HELIX 2 AA2 GLN A 203 SER A 207 5 5 HELIX 3 AA3 THR A 301 SER A 305 5 5 HELIX 4 AA4 VAL A 391 GLU A 395 5 5 HELIX 5 AA5 HIS B 269 CYS B 273 5 5 HELIX 6 AA6 ASP B 299 CYS B 303 5 5 SHEET 1 AA1 2 HIS A 41 SER A 44 0 SHEET 2 AA1 2 SER A 62 GLU A 64 -1 O SER A 62 N VAL A 43 SHEET 1 AA2 5 ALA A 49 THR A 51 0 SHEET 2 AA2 5 ALA A 132 VAL A 136 1 O LYS A 133 N ALA A 49 SHEET 3 AA2 5 GLY A 113 SER A 120 -1 N TYR A 115 O ALA A 132 SHEET 4 AA2 5 VAL A 71 LYS A 76 -1 N LYS A 75 O GLN A 116 SHEET 5 AA2 5 LEU A 79 ILE A 80 -1 O LEU A 79 N LYS A 76 SHEET 1 AA3 4 ALA A 49 THR A 51 0 SHEET 2 AA3 4 ALA A 132 VAL A 136 1 O LYS A 133 N ALA A 49 SHEET 3 AA3 4 GLY A 113 SER A 120 -1 N TYR A 115 O ALA A 132 SHEET 4 AA3 4 SER A 126 ILE A 128 -1 O ILE A 127 N ALA A 119 SHEET 1 AA4 3 VAL A 57 LEU A 59 0 SHEET 2 AA4 3 LEU A 97 ILE A 99 -1 O LEU A 97 N LEU A 59 SHEET 3 AA4 3 LYS A 89 GLN A 91 -1 N GLN A 90 O LEU A 98 SHEET 1 AA5 2 ARG A 141 PHE A 142 0 SHEET 2 AA5 2 VAL A 163 ILE A 164 -1 O ILE A 164 N ARG A 141 SHEET 1 AA6 5 ILE A 149 PHE A 152 0 SHEET 2 AA6 5 ALA A 226 LEU A 231 1 O ARG A 229 N ALA A 151 SHEET 3 AA6 5 GLY A 208 ASN A 216 -1 N TYR A 210 O ALA A 226 SHEET 4 AA6 5 THR A 170 LYS A 175 -1 N GLN A 174 O ARG A 211 SHEET 5 AA6 5 GLN A 178 ASP A 179 -1 O GLN A 178 N LYS A 175 SHEET 1 AA7 4 ILE A 149 PHE A 152 0 SHEET 2 AA7 4 ALA A 226 LEU A 231 1 O ARG A 229 N ALA A 151 SHEET 3 AA7 4 GLY A 208 ASN A 216 -1 N TYR A 210 O ALA A 226 SHEET 4 AA7 4 SER A 219 THR A 222 -1 O ARG A 221 N ALA A 214 SHEET 1 AA8 3 VAL A 157 LEU A 159 0 SHEET 2 AA8 3 LEU A 197 ILE A 199 -1 O LEU A 197 N LEU A 159 SHEET 3 AA8 3 VAL A 189 VAL A 191 -1 N VAL A 190 O GLN A 198 SHEET 1 AA9 2 ARG A 238 GLN A 244 0 SHEET 2 AA9 2 CYS A 262 TYR A 266 -1 O TYR A 266 N ARG A 238 SHEET 1 AB1 5 VAL A 249 ILE A 252 0 SHEET 2 AB1 5 GLU A 317 ASN A 335 1 O GLU A 324 N VAL A 249 SHEET 3 AB1 5 GLY A 306 TYR A 314 -1 N CYS A 310 O ALA A 321 SHEET 4 AB1 5 SER A 270 ARG A 275 -1 N THR A 272 O VAL A 311 SHEET 5 AB1 5 GLU A 278 VAL A 279 -1 O GLU A 278 N ARG A 275 SHEET 1 AB2 3 VAL A 249 ILE A 252 0 SHEET 2 AB2 3 GLU A 317 ASN A 335 1 O GLU A 324 N VAL A 249 SHEET 3 AB2 3 ALA A 353 LYS A 357 -1 O LYS A 357 N VAL A 329 SHEET 1 AB3 3 ALA A 257 LEU A 259 0 SHEET 2 AB3 3 ASN A 294 ILE A 297 -1 O ILE A 297 N ALA A 257 SHEET 3 AB3 3 TYR A 287 LEU A 290 -1 N SER A 288 O LEU A 296 SHEET 1 AB4 5 LEU A 340 TYR A 341 0 SHEET 2 AB4 5 GLY A 407 ILE A 416 1 O GLN A 414 N LEU A 340 SHEET 3 AB4 5 GLY A 396 ASN A 404 -1 N TYR A 398 O ALA A 413 SHEET 4 AB4 5 THR A 361 LYS A 366 -1 N ASN A 363 O VAL A 401 SHEET 5 AB4 5 ASP A 369 VAL A 370 -1 O ASP A 369 N LYS A 366 SHEET 1 AB5 3 ILE A 348 PHE A 350 0 SHEET 2 AB5 3 ASN A 384 ILE A 387 -1 O LEU A 385 N PHE A 350 SHEET 3 AB5 3 PHE A 377 VAL A 380 -1 N VAL A 380 O ASN A 384 SHEET 1 AB6 2 THR B 277 ASP B 280 0 SHEET 2 AB6 2 LEU B 285 PRO B 288 -1 O THR B 287 N CYS B 278 SHEET 1 AB7 3 LYS B 296 CYS B 297 0 SHEET 2 AB7 3 GLY B 324 VAL B 327 -1 O GLY B 324 N CYS B 297 SHEET 3 AB7 3 ARG B 308 ALA B 311 -1 N ARG B 308 O VAL B 327 SSBOND 1 CYS A 61 CYS A 117 1555 1555 2.03 SSBOND 2 CYS A 161 CYS A 212 1555 1555 2.03 SSBOND 3 CYS A 261 CYS A 310 1555 1555 2.03 SSBOND 4 CYS A 352 CYS A 400 1555 1555 2.03 SSBOND 5 CYS B 267 CYS B 279 1555 1555 2.03 SSBOND 6 CYS B 273 CYS B 286 1555 1555 2.03 SSBOND 7 CYS B 278 CYS B 301 1555 1555 2.03 SSBOND 8 CYS B 297 CYS B 309 1555 1555 2.03 SSBOND 9 CYS B 303 CYS B 326 1555 1555 2.03 LINK ND2 ASN A 60 C1 NAG C 1 1555 1555 1.38 LINK ND2 ASN A 94 C1 NAG D 1 1555 1555 1.39 LINK ND2 ASN A 299 C1 NAG E 1 1555 1555 1.42 LINK ND2 ASN A 318 C1 NAG A 507 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.43 CISPEP 1 ASP A 166 PRO A 167 0 2.26 CISPEP 2 TYR A 266 PRO A 267 0 -1.05 CISPEP 3 LYS A 357 PRO A 358 0 0.18 CRYST1 108.069 108.069 130.266 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009253 0.005342 0.000000 0.00000 SCALE2 0.000000 0.010685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007677 0.00000