HEADER SUGAR BINDING PROTEIN 19-JAN-18 5Z5P TITLE CRYSTAL STRUCTURE OF CONA-R3M CAVEAT 5Z5P R3M A 303 HAS WRONG CHIRALITY AT ATOM C2M R3M B 301 HAS CAVEAT 2 5Z5P WRONG CHIRALITY AT ATOM C2M COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN-A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CON A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CONA-R3M, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.S.CHEN,J.H.GAN,R.T.HU REVDAT 2 27-MAR-24 5Z5P 1 LINK REVDAT 1 07-NOV-18 5Z5P 0 JRNL AUTH G.S.CHEN,J.H.GAN,R.T.HU JRNL TITL CRYSTAL STRUCTURE OF CONA-R3M JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 72652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2368 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3912 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3630 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5348 ; 2.647 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8368 ; 1.260 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 9.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;37.244 ;24.872 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;13.967 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.757 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.303 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4469 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 887 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1919 ; 2.209 ; 1.625 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1918 ; 2.206 ; 1.625 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2411 ; 3.386 ; 2.420 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2412 ; 3.386 ; 2.420 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1993 ; 2.615 ; 1.907 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1994 ; 2.614 ; 1.906 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2929 ; 3.967 ; 2.724 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4515 ; 6.316 ;14.284 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4516 ; 6.315 ;14.284 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5Z5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9716 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 6000, 20 MM REMARK 280 HEPES, 100 MM NACL, 5 MM CACL2, 5 MM MNCL2 PH 7.2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.97250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.97250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 116 REMARK 465 SER A 117 REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 465 HIS A 121 REMARK 465 GLU A 122 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 SER A 184 REMARK 465 SER A 185 REMARK 465 ALA A 186 REMARK 465 VAL A 187 REMARK 465 VAL A 188 REMARK 465 PRO A 202 REMARK 465 ASP A 203 REMARK 465 SER A 204 REMARK 465 SER B 117 REMARK 465 ASN B 118 REMARK 465 SER B 119 REMARK 465 THR B 120 REMARK 465 HIS B 121 REMARK 465 GLU B 122 REMARK 465 SER B 161 REMARK 465 ASN B 162 REMARK 465 GLY B 163 REMARK 465 GLU B 183 REMARK 465 SER B 184 REMARK 465 SER B 185 REMARK 465 ALA B 186 REMARK 465 VAL B 187 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 414 O HOH A 517 1.95 REMARK 500 NZ LYS A 59 OD1 ASP A 80 2.11 REMARK 500 OD1 ASP A 19 O HOH A 401 2.12 REMARK 500 OD1 ASP A 80 OD2 ASP A 82 2.14 REMARK 500 OD1 ASP A 58 O HOH A 402 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 20 166.10 -46.01 REMARK 500 PRO A 20 163.93 -46.01 REMARK 500 SER A 21 48.94 -85.31 REMARK 500 ASN A 216 151.95 -48.99 REMARK 500 PRO B 20 168.00 -47.07 REMARK 500 PRO B 20 167.70 -47.07 REMARK 500 SER B 21 31.53 -84.19 REMARK 500 ASN B 69 34.84 80.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 94.9 REMARK 620 3 ASP A 19 OD1 139.0 125.1 REMARK 620 4 ASP A 19 OD2 156.9 68.5 57.1 REMARK 620 5 HIS A 24 NE2 94.1 86.5 96.6 100.5 REMARK 620 6 HOH A 401 O 85.8 177.6 54.6 111.5 91.2 REMARK 620 7 HOH A 438 O 86.9 91.2 84.1 77.8 177.6 91.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 53.2 REMARK 620 3 TYR A 12 O 74.3 114.8 REMARK 620 4 ASP A 19 OD2 106.0 57.7 116.7 REMARK 620 5 HOH A 441 O 72.1 105.8 89.3 152.9 REMARK 620 6 HOH A 467 O 115.5 75.0 169.7 64.8 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 304 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 96.1 REMARK 620 3 ASP B 19 OD1 141.1 122.2 REMARK 620 4 ASP B 19 OD2 158.3 68.2 54.6 REMARK 620 5 HIS B 24 NE2 91.5 85.8 97.1 101.7 REMARK 620 6 HOH B 402 O 85.4 174.2 57.2 111.7 88.5 REMARK 620 7 HOH B 446 O 90.1 93.4 82.0 76.6 178.3 92.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 50.0 REMARK 620 3 TYR B 12 O 76.6 111.7 REMARK 620 4 ASN B 14 OD1 147.9 162.1 80.0 REMARK 620 5 ASP B 19 OD2 104.6 59.1 112.2 104.5 REMARK 620 6 HOH B 442 O 116.5 78.1 166.8 88.4 64.4 REMARK 620 7 HOH B 462 O 74.0 107.2 91.8 85.2 155.2 93.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 176 OH REMARK 620 2 HOH B 519 O 107.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R3M A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R3M B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 304 DBREF 5Z5P A 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 5Z5P A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 5Z5P B 1 118 UNP P02866 CONA_CANEN 164 281 DBREF 5Z5P B 119 237 UNP P02866 CONA_CANEN 30 148 SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET MN A 301 1 HET CA A 302 1 HET R3M A 303 115 HET R3M B 301 59 HET CA B 302 1 HET CA B 303 1 HET MN B 304 1 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM R3M 2-[2-(2-{4-[(ALPHA-D-MANNOPYRANOSYLOXY)METHYL]-1H-1,2, HETNAM 2 R3M 3-TRIAZOL-1-YL}ETHOXY)ETHOXY]ETHYL 2-[3,6- HETNAM 3 R3M BIS(DIETHYLAMINO)-9H-XANTHEN-9-YL]BENZOATE FORMUL 3 MN 2(MN 2+) FORMUL 4 CA 3(CA 2+) FORMUL 5 R3M 2(C43 H57 N5 O11) FORMUL 10 HOH *290(H2 O) HELIX 1 AA1 ASN A 14 GLY A 18 5 5 HELIX 2 AA2 ASP A 80 VAL A 84 5 5 HELIX 3 AA3 THR A 226 LEU A 230 5 5 HELIX 4 AA4 ASN B 14 GLY B 18 5 5 HELIX 5 AA5 ASP B 80 LEU B 85 1 6 HELIX 6 AA6 THR B 150 GLY B 152 5 3 HELIX 7 AA7 THR B 226 LEU B 230 5 5 SHEET 1 AA1 7 LYS A 36 LYS A 39 0 SHEET 2 AA1 7 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA1 7 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA1 7 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 AA1 7 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA1 7 VAL A 170 PHE A 175 -1 O PHE A 175 N VAL A 91 SHEET 7 AA1 7 LEU A 140 GLY A 144 -1 N ILE A 141 O LEU A 174 SHEET 1 AA2 6 LYS A 36 LYS A 39 0 SHEET 2 AA2 6 HIS A 24 ILE A 29 -1 N ILE A 25 O ALA A 38 SHEET 3 AA2 6 ILE A 4 ASP A 10 -1 N ALA A 6 O ASP A 28 SHEET 4 AA2 6 GLY A 209 ASN A 216 -1 O ILE A 210 N LEU A 9 SHEET 5 AA2 6 TRP A 88 SER A 96 -1 N SER A 94 O ALA A 211 SHEET 6 AA2 6 VAL A 179 HIS A 180 -1 O VAL A 179 N VAL A 89 SHEET 1 AA3 6 ALA A 73 ASP A 78 0 SHEET 2 AA3 6 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 AA3 6 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA3 6 SER A 190 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA3 6 THR A 105 LYS A 114 -1 N SER A 110 O THR A 194 SHEET 6 AA3 6 ALA A 125 PHE A 130 -1 O PHE A 130 N TRP A 109 SHEET 1 AA4 7 ALA A 73 ASP A 78 0 SHEET 2 AA4 7 ARG A 60 SER A 66 -1 N LEU A 61 O TYR A 77 SHEET 3 AA4 7 VAL A 47 ASN A 55 -1 N ILE A 53 O SER A 62 SHEET 4 AA4 7 SER A 190 LEU A 198 -1 O ALA A 193 N ILE A 52 SHEET 5 AA4 7 THR A 105 LYS A 114 -1 N SER A 110 O THR A 194 SHEET 6 AA4 7 LEU A 154 GLU A 155 -1 O LEU A 154 N ILE A 106 SHEET 7 AA4 7 THR A 147 THR A 148 -1 N THR A 147 O GLU A 155 SHEET 1 AA5 7 LYS B 36 LYS B 39 0 SHEET 2 AA5 7 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA5 7 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA5 7 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA5 7 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA5 7 VAL B 170 PHE B 175 -1 O PHE B 175 N VAL B 91 SHEET 7 AA5 7 LEU B 140 GLY B 144 -1 N ILE B 141 O LEU B 174 SHEET 1 AA6 6 LYS B 36 LYS B 39 0 SHEET 2 AA6 6 HIS B 24 ILE B 29 -1 N ILE B 25 O ALA B 38 SHEET 3 AA6 6 ILE B 4 ASP B 10 -1 N ALA B 6 O ASP B 28 SHEET 4 AA6 6 GLY B 209 ASN B 216 -1 O ILE B 210 N LEU B 9 SHEET 5 AA6 6 TRP B 88 SER B 96 -1 N SER B 94 O ALA B 211 SHEET 6 AA6 6 VAL B 179 HIS B 180 -1 O VAL B 179 N VAL B 89 SHEET 1 AA7 6 ALA B 73 ASP B 78 0 SHEET 2 AA7 6 ARG B 60 SER B 66 -1 N VAL B 65 O ALA B 73 SHEET 3 AA7 6 VAL B 47 ASN B 55 -1 N ILE B 53 O SER B 62 SHEET 4 AA7 6 ALA B 189 LEU B 198 -1 O ALA B 193 N ILE B 52 SHEET 5 AA7 6 THR B 105 LEU B 115 -1 N SER B 110 O THR B 194 SHEET 6 AA7 6 ASN B 124 PHE B 130 -1 O PHE B 130 N TRP B 109 SHEET 1 AA8 7 ALA B 73 ASP B 78 0 SHEET 2 AA8 7 ARG B 60 SER B 66 -1 N VAL B 65 O ALA B 73 SHEET 3 AA8 7 VAL B 47 ASN B 55 -1 N ILE B 53 O SER B 62 SHEET 4 AA8 7 ALA B 189 LEU B 198 -1 O ALA B 193 N ILE B 52 SHEET 5 AA8 7 THR B 105 LEU B 115 -1 N SER B 110 O THR B 194 SHEET 6 AA8 7 LEU B 154 GLU B 155 -1 O LEU B 154 N ILE B 106 SHEET 7 AA8 7 THR B 147 THR B 148 -1 N THR B 147 O GLU B 155 LINK OE2 GLU A 8 MN MN A 301 1555 1555 2.15 LINK OD2 ASP A 10 MN MN A 301 1555 1555 2.31 LINK OD1 ASP A 10 CA CA A 302 1555 1555 2.53 LINK OD2 ASP A 10 CA CA A 302 1555 1555 2.37 LINK O TYR A 12 CA CA A 302 1555 1555 2.42 LINK OD1 ASP A 19 MN MN A 301 1555 1555 2.32 LINK OD2 ASP A 19 MN MN A 301 1555 1555 2.28 LINK OD2 ASP A 19 CA CA A 302 1555 1555 2.89 LINK NE2 HIS A 24 MN MN A 301 1555 1555 2.28 LINK MN MN A 301 O HOH A 401 1555 1555 2.30 LINK MN MN A 301 O HOH A 438 1555 1555 2.26 LINK CA CA A 302 O HOH A 441 1555 1555 2.46 LINK CA CA A 302 O HOH A 467 1555 1555 2.46 LINK OE2 GLU B 8 MN MN B 304 1555 1555 2.11 LINK OD1 ASP B 10 CA CA B 302 1555 1555 2.45 LINK OD2 ASP B 10 CA CA B 302 1555 1555 2.42 LINK OD2 ASP B 10 MN MN B 304 1555 1555 2.33 LINK O TYR B 12 CA CA B 302 1555 1555 2.38 LINK OD1 ASN B 14 CA CA B 302 1555 1555 2.37 LINK OD2 ASP B 19 CA CA B 302 1555 1555 2.92 LINK OD1 ASP B 19 MN MN B 304 1555 1555 2.36 LINK OD2 ASP B 19 MN MN B 304 1555 1555 2.42 LINK NE2 HIS B 24 MN MN B 304 1555 1555 2.30 LINK OH TYR B 176 CA CA B 303 1555 1555 2.93 LINK CA CA B 302 O HOH B 442 1555 1555 2.37 LINK CA CA B 302 O HOH B 462 1555 1555 2.50 LINK CA CA B 303 O HOH B 519 1555 1555 3.08 LINK MN MN B 304 O HOH B 402 1555 1555 2.36 LINK MN MN B 304 O HOH B 446 1555 1555 2.22 CISPEP 1 ALA A 207 ASP A 208 0 1.05 CISPEP 2 ALA B 207 ASP B 208 0 -0.67 SITE 1 AC1 6 GLU A 8 ASP A 10 ASP A 19 HIS A 24 SITE 2 AC1 6 HOH A 401 HOH A 438 SITE 1 AC2 6 ASP A 10 TYR A 12 ASN A 14 ASP A 19 SITE 2 AC2 6 HOH A 441 HOH A 467 SITE 1 AC3 18 TYR A 12 ASN A 14 ASP A 16 ARG A 90 SITE 2 AC3 18 GLY A 98 LEU A 99 TYR A 100 ALA A 207 SITE 3 AC3 18 ASP A 208 ILE A 217 GLY A 227 ARG A 228 SITE 4 AC3 18 HOH A 463 HOH A 465 HOH A 487 ILE B 141 SITE 5 AC3 18 TYR B 176 R3M B 301 SITE 1 AC4 19 TYR A 100 ILE A 141 TYR A 176 HIS A 205 SITE 2 AC4 19 R3M A 303 TYR B 12 ASN B 14 GLY B 98 SITE 3 AC4 19 LEU B 99 TYR B 100 ALA B 207 ASP B 208 SITE 4 AC4 19 GLY B 227 ARG B 228 HOH B 431 HOH B 434 SITE 5 AC4 19 HOH B 436 HOH B 440 HOH B 487 SITE 1 AC5 6 ASP B 10 TYR B 12 ASN B 14 ASP B 19 SITE 2 AC5 6 HOH B 442 HOH B 462 SITE 1 AC6 3 ARG A 90 TYR B 176 HOH B 519 SITE 1 AC7 6 GLU B 8 ASP B 10 ASP B 19 HIS B 24 SITE 2 AC7 6 HOH B 402 HOH B 446 CRYST1 58.742 61.945 115.960 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016143 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000