HEADER HYDROLASE 22-JAN-18 5Z66 TITLE STRUCTURE OF PERIPLASMIC TREHALASE FROM DIAMONDBACK MOTH GUT BACTERIA TITLE 2 COMPLEXED WITH VALIDOXYLAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC TREHALASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA,ALPHA-TREHALASE,ALPHA-TREHALOSE GLUCOHYDROLASE; COMPND 5 EC: 3.2.1.28; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: TREA, SAMEA2273171_02252; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TREHALASE FROM INSECT GUT BACTERIUM, INHIBITOR VALIDOXYLAMINE-BOUND KEYWDS 2 STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.R.HARNE,A.S.ADHAV,R.S.JOSHI,P.GAYATHRI REVDAT 4 22-NOV-23 5Z66 1 REMARK REVDAT 3 22-MAY-19 5Z66 1 JRNL REVDAT 2 27-FEB-19 5Z66 1 JRNL REVDAT 1 23-JAN-19 5Z66 0 JRNL AUTH A.ADHAV,S.HARNE,A.BHIDE,A.GIRI,P.GAYATHRI,R.JOSHI JRNL TITL MECHANISTIC INSIGHTS INTO ENZYMATIC CATALYSIS BY TREHALASE JRNL TITL 2 FROM THE INSECT GUT ENDOSYMBIONT ENTEROBACTER CLOACAE. JRNL REF FEBS J. V. 286 1700 2019 JRNL REFN ISSN 1742-464X JRNL PMID 30657252 JRNL DOI 10.1111/FEBS.14760 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.5015 - 4.7972 0.99 2751 155 0.1591 0.1722 REMARK 3 2 4.7972 - 3.8100 1.00 2705 150 0.1197 0.1364 REMARK 3 3 3.8100 - 3.3291 1.00 2692 127 0.1294 0.1449 REMARK 3 4 3.3291 - 3.0250 1.00 2659 141 0.1460 0.1766 REMARK 3 5 3.0250 - 2.8084 1.00 2675 145 0.1510 0.1719 REMARK 3 6 2.8084 - 2.6429 1.00 2662 141 0.1554 0.1765 REMARK 3 7 2.6429 - 2.5106 1.00 2674 138 0.1561 0.1849 REMARK 3 8 2.5106 - 2.4013 1.00 2640 139 0.1614 0.2133 REMARK 3 9 2.4013 - 2.3089 1.00 2639 139 0.1599 0.1910 REMARK 3 10 2.3089 - 2.2293 0.99 2616 146 0.1659 0.2136 REMARK 3 11 2.2293 - 2.1596 1.00 2670 145 0.1748 0.2109 REMARK 3 12 2.1596 - 2.0979 1.00 2645 128 0.1912 0.2384 REMARK 3 13 2.0979 - 2.0427 1.00 2656 124 0.1939 0.2426 REMARK 3 14 2.0427 - 1.9928 0.99 2602 165 0.1943 0.2517 REMARK 3 15 1.9928 - 1.9475 1.00 2656 121 0.2056 0.2490 REMARK 3 16 1.9475 - 1.9061 0.99 2609 171 0.2204 0.2722 REMARK 3 17 1.9061 - 1.8680 0.99 2669 141 0.2264 0.2873 REMARK 3 18 1.8680 - 1.8327 1.00 2595 136 0.2345 0.2653 REMARK 3 19 1.8327 - 1.8000 1.00 2663 146 0.2553 0.2723 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4235 REMARK 3 ANGLE : 0.729 5783 REMARK 3 CHIRALITY : 0.043 611 REMARK 3 PLANARITY : 0.005 746 REMARK 3 DIHEDRAL : 14.170 2497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JG0 REMARK 200 REMARK 200 REMARK: PLATE-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULPHATE, 28% PEG 4000, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1293 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 HIS A 13 REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 THR A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 GLN A 21 REMARK 465 GLN A 22 REMARK 465 MET A 23 REMARK 465 GLY A 24 REMARK 465 ARG A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 PHE A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 ASN A 32 REMARK 465 PRO A 33 REMARK 465 ALA A 34 REMARK 465 PRO A 547 REMARK 465 ALA A 548 REMARK 465 ALA A 549 REMARK 465 ASN A 550 REMARK 465 ASP A 551 REMARK 465 GLU A 552 REMARK 465 VAL A 553 REMARK 465 ALA A 554 REMARK 465 PRO A 555 REMARK 465 VAL A 556 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 55 NZ REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 GLN A 85 CG CD OE1 NE2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS A 383 CD CE NZ REMARK 470 LYS A 396 CD CE NZ REMARK 470 LYS A 471 CD CE NZ REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 LYS A 537 CD CE NZ REMARK 470 GLU A 544 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 886 O HOH A 1015 2.08 REMARK 500 O HOH A 1153 O HOH A 1302 2.11 REMARK 500 O HOH A 865 O HOH A 1110 2.12 REMARK 500 O HOH A 702 O HOH A 1023 2.12 REMARK 500 O HOH A 828 O HOH A 1143 2.12 REMARK 500 O HOH A 1142 O HOH A 1241 2.14 REMARK 500 O HOH A 1062 O HOH A 1106 2.16 REMARK 500 O HOH A 1023 O HOH A 1058 2.18 REMARK 500 O HOH A 1106 O HOH A 1289 2.18 REMARK 500 O HOH A 767 O HOH A 1202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 133 102.72 -42.55 REMARK 500 TYR A 159 -72.00 -68.37 REMARK 500 HIS A 174 65.82 -110.29 REMARK 500 SER A 207 -136.84 -110.08 REMARK 500 LYS A 255 -111.39 50.41 REMARK 500 ARG A 328 53.09 -142.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1316 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A1317 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A1318 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH A1319 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1320 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1321 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1322 DISTANCE = 7.24 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VDM A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 610 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THE DIFFERENCE WITH THE SEQUENCE DATABASE REMARK 999 MIGHT ARISE FROM THE NATURAL VARIATION IN THE POPULATION OR ERRORS REMARK 999 IN GENOME SEQUENCES. DBREF1 5Z66 A 30 556 UNP A0A156C5X3_ENTCL DBREF2 5Z66 A A0A156C5X3 30 556 SEQADV 5Z66 MET A -6 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A -5 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A -4 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A -3 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A -2 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A -1 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A 0 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A 1 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A 2 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A 3 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A 4 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A 5 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 6 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 LEU A 7 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 VAL A 8 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 PRO A 9 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 ARG A 10 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 11 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A 12 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 HIS A 13 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 MET A 14 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 ALA A 15 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A 16 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 MET A 17 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 THR A 18 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 19 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 20 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLN A 21 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLN A 22 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 MET A 23 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 24 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 ARG A 25 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLY A 26 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 SER A 27 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 GLU A 28 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 PHE A 29 UNP A0A156C5X EXPRESSION TAG SEQADV 5Z66 ASN A 32 UNP A0A156C5X SER 32 ENGINEERED MUTATION SEQADV 5Z66 THR A 35 UNP A0A156C5X ALA 35 ENGINEERED MUTATION SEQADV 5Z66 ARG A 429 UNP A0A156C5X HIS 429 SEE SEQUENCE DETAILS SEQADV 5Z66 VAL A 553 UNP A0A156C5X ALA 553 ENGINEERED MUTATION SEQRES 1 A 563 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 563 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 563 GLY GLN GLN MET GLY ARG GLY SER GLU PHE ASP ASP ASN SEQRES 4 A 563 PRO ALA THR GLN THR THR SER PRO ASP ILE LEU LEU GLY SEQRES 5 A 563 PRO LEU PHE ASN ASP VAL GLN SER ALA LYS LEU PHE PRO SEQRES 6 A 563 ASP GLN LYS THR PHE ALA ASP ALA VAL PRO LYS SER ASP SEQRES 7 A 563 PRO LEU MET ILE LEU ALA ASP TYR ARG MET GLN HIS THR SEQRES 8 A 563 GLN SER SER PHE ASP LEU ARG HIS PHE VAL GLU MET ASN SEQRES 9 A 563 PHE THR LEU PRO ALA GLU GLY GLU LYS TYR VAL PRO PRO SEQRES 10 A 563 ALA GLY GLN SER LEU ARG GLU HIS ILE ASP ASP LEU TRP SEQRES 11 A 563 PRO VAL LEU THR ARG THR THR ASP LYS ALA SER ASN LYS SEQRES 12 A 563 TRP ASP SER LEU LEU PRO LEU PRO LYS PRO TYR VAL VAL SEQRES 13 A 563 PRO GLY GLY ARG PHE ARG GLU VAL TYR TYR TRP ASP SER SEQRES 14 A 563 TYR PHE THR MET LEU GLY LEU ALA GLU SER ASP HIS TRP SEQRES 15 A 563 ASP LYS ILE SER ASP MET VAL ASP ASN PHE ALA TYR GLU SEQRES 16 A 563 ILE ASP THR PHE GLY HIS ILE PRO ASN GLY ASN ARG SER SEQRES 17 A 563 TYR TYR LEU SER ARG SER GLN PRO PRO PHE PHE SER MET SEQRES 18 A 563 MET VAL GLU LEU LEU ALA THR HIS ASP SER ASP ALA LEU SEQRES 19 A 563 LYS LYS TYR ARG PRO GLN MET GLU LYS GLU TYR ALA TYR SEQRES 20 A 563 TRP MET ASP GLY VAL ASP ALA LEU GLN PRO GLY GLN ALA SEQRES 21 A 563 ASN LYS ARG VAL VAL LYS LEU ASP ASP GLY ALA ILE LEU SEQRES 22 A 563 ASN ARG TYR TRP ASP ASP ARG ASP THR PRO ARG PRO GLU SEQRES 23 A 563 SER TRP LEU ASP ASP VAL ASN THR ALA LYS SER ASN PRO SEQRES 24 A 563 ASN ARG PRO ALA THR GLU ILE TYR ARG ASP LEU ARG SER SEQRES 25 A 563 ALA ALA ALA SER GLY TRP ASP PHE SER SER ARG TRP MET SEQRES 26 A 563 ASP ASP PRO GLN LYS LEU GLY THR ILE ARG THR THR SER SEQRES 27 A 563 ILE VAL PRO VAL ASP LEU ASN ALA LEU MET PHE LYS MET SEQRES 28 A 563 GLU LYS LEU LEU ALA ARG ALA SER GLN GLU SER GLY ASP SEQRES 29 A 563 ALA ALA SER ALA SER LYS TYR GLU ALA LEU ALA THR ALA SEQRES 30 A 563 ARG GLN LYS ALA ILE GLU SER HIS LEU TRP ASN ASP LYS SEQRES 31 A 563 GLU GLY TRP TYR ALA ASP TYR ASP LEU LYS SER LYS LYS SEQRES 32 A 563 VAL ARG ASN GLN LEU THR ALA ALA ALA LEU PHE PRO LEU SEQRES 33 A 563 TYR VAL LYS ALA ALA ALA GLN ASP ARG ALA ASP LYS VAL SEQRES 34 A 563 ALA ALA ALA THR SER SER ARG LEU LEU LYS PRO GLY GLY SEQRES 35 A 563 ILE ALA THR THR THR VAL ASN SER GLY GLN GLN TRP ASP SEQRES 36 A 563 ALA PRO ASN GLY TRP ALA PRO LEU GLN TRP VAL ALA ALA SEQRES 37 A 563 GLU GLY LEU GLN ASN TYR GLY GLN GLU LYS VAL SER MET SEQRES 38 A 563 ASP VAL THR TRP ARG PHE LEU LYS ASN VAL GLN HIS THR SEQRES 39 A 563 TYR ASP ARG GLU LYS LYS LEU VAL GLU LYS TYR ASP VAL SEQRES 40 A 563 SER THR THR GLY THR GLY GLY GLY GLY GLY GLU TYR PRO SEQRES 41 A 563 LEU GLN ASP GLY PHE GLY TRP SER ASN GLY VAL THR LEU SEQRES 42 A 563 LYS MET LEU ASP ARG VAL CYS PRO LYS ALA LYS PRO CYS SEQRES 43 A 563 ASP SER VAL PRO GLU ASN GLN PRO ALA ALA ASN ASP GLU SEQRES 44 A 563 VAL ALA PRO VAL HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET VDM A 609 23 HET GOL A 610 6 HETNAM SO4 SULFATE ION HETNAM VDM (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2, HETNAM 2 VDM 3,4-TRIHYDROXY-5-(HYDROXYMETHYL) HETNAM 3 VDM CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL HETNAM GOL GLYCEROL HETSYN VDM VALIDOXYLAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 VDM C14 H25 N O8 FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *622(H2 O) HELIX 1 AA1 SER A 39 LEU A 44 1 6 HELIX 2 AA2 LEU A 44 LYS A 55 1 12 HELIX 3 AA3 GLN A 60 ASP A 65 1 6 HELIX 4 AA4 ASP A 71 HIS A 83 1 13 HELIX 5 AA5 ASP A 89 ASN A 97 1 9 HELIX 6 AA6 SER A 114 TRP A 123 1 10 HELIX 7 AA7 TYR A 158 SER A 172 1 15 HELIX 8 AA8 HIS A 174 GLY A 193 1 20 HELIX 9 AA9 ARG A 200 LEU A 204 5 5 HELIX 10 AB1 PHE A 211 THR A 221 1 11 HELIX 11 AB2 ASP A 225 MET A 242 1 18 HELIX 12 AB3 GLY A 244 LEU A 248 5 5 HELIX 13 AB4 ARG A 277 GLU A 279 5 3 HELIX 14 AB5 SER A 280 SER A 290 1 11 HELIX 15 AB6 PRO A 295 GLY A 310 1 16 HELIX 16 AB7 SER A 314 MET A 318 5 5 HELIX 17 AB8 LYS A 323 ILE A 327 5 5 HELIX 18 AB9 ARG A 328 THR A 330 5 3 HELIX 19 AC1 PRO A 334 SER A 355 1 22 HELIX 20 AC2 ASP A 357 LEU A 379 1 23 HELIX 21 AC3 THR A 402 ALA A 405 5 4 HELIX 22 AC4 LEU A 406 VAL A 411 1 6 HELIX 23 AC5 ALA A 415 LEU A 430 1 16 HELIX 24 AC6 TRP A 453 TYR A 467 1 15 HELIX 25 AC7 GLN A 469 LYS A 492 1 24 HELIX 26 AC8 PHE A 518 VAL A 532 1 15 SHEET 1 AA1 2 VAL A 67 PRO A 68 0 SHEET 2 AA1 2 PHE A 98 THR A 99 -1 O THR A 99 N VAL A 67 SHEET 1 AA2 2 THR A 127 ARG A 128 0 SHEET 2 AA2 2 TYR A 147 VAL A 148 -1 O TYR A 147 N ARG A 128 SHEET 1 AA3 3 GLN A 252 ASN A 254 0 SHEET 2 AA3 3 VAL A 257 LYS A 259 -1 O VAL A 257 N ASN A 254 SHEET 3 AA3 3 ILE A 265 ASN A 267 -1 O LEU A 266 N VAL A 258 SHEET 1 AA4 3 ILE A 332 VAL A 333 0 SHEET 2 AA4 3 TYR A 390 ASP A 391 -1 O TYR A 390 N VAL A 333 SHEET 3 AA4 3 LYS A 396 VAL A 397 -1 O LYS A 396 N ASP A 391 SHEET 1 AA5 2 TRP A 380 ASN A 381 0 SHEET 2 AA5 2 TRP A 386 TYR A 387 -1 O TRP A 386 N ASN A 381 SHEET 1 AA6 2 LEU A 431 LYS A 432 0 SHEET 2 AA6 2 GLY A 435 ILE A 436 -1 O GLY A 435 N LYS A 432 SHEET 1 AA7 2 ASN A 451 GLY A 452 0 SHEET 2 AA7 2 TYR A 498 ASP A 499 -1 O TYR A 498 N GLY A 452 SHEET 1 AA8 2 LEU A 494 VAL A 495 0 SHEET 2 AA8 2 ASP A 516 GLY A 517 -1 O GLY A 517 N LEU A 494 SSBOND 1 CYS A 533 CYS A 539 1555 1555 2.04 CISPEP 1 ASP A 312 PHE A 313 0 -1.44 CISPEP 2 ALA A 449 PRO A 450 0 4.51 CISPEP 3 GLY A 517 PHE A 518 0 -10.90 SITE 1 AC1 7 HIS A 174 ASP A 176 LYS A 177 HOH A 742 SITE 2 AC1 7 HOH A 779 HOH A 832 HOH A 916 SITE 1 AC2 5 ARG A 398 ASN A 399 GLN A 400 HOH A 756 SITE 2 AC2 5 HOH A1008 SITE 1 AC3 5 GLU A 217 LYS A 343 ARG A 350 LYS A 412 SITE 2 AC3 5 HOH A 941 SITE 1 AC4 6 TYR A 240 LYS A 255 ARG A 256 ASP A 272 SITE 2 AC4 6 HOH A 730 HOH A 935 SITE 1 AC5 5 THR A 129 ASP A 131 LYS A 132 HOH A 757 SITE 2 AC5 5 HOH A 827 SITE 1 AC6 4 ASP A 540 SER A 541 HOH A 831 HOH A 851 SITE 1 AC7 7 LYS A 145 HOH A 701 HOH A 702 HOH A 706 SITE 2 AC7 7 HOH A 707 HOH A 961 HOH A1035 SITE 1 AC8 3 LYS A 535 HOH A 928 HOH A1031 SITE 1 AC9 24 PRO A 150 ARG A 153 PHE A 154 TYR A 158 SITE 2 AC9 24 TRP A 160 ASP A 161 ASN A 197 TYR A 203 SITE 3 AC9 24 ARG A 206 GLN A 208 ARG A 277 GLU A 279 SITE 4 AC9 24 SER A 280 ALA A 307 GLY A 310 ASP A 312 SITE 5 AC9 24 GLN A 446 TRP A 447 GLU A 511 TYR A 512 SITE 6 AC9 24 PHE A 518 TRP A 520 HOH A 744 HOH A 878 SITE 1 AD1 5 SER A 224 ASP A 225 LYS A 228 GLU A 384 SITE 2 AD1 5 ARG A 429 CRYST1 122.030 51.450 96.400 90.00 106.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008195 0.000000 0.002498 0.00000 SCALE2 0.000000 0.019436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000