HEADER TRANSFERASE 23-JAN-18 5Z6N TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI ELAA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ELAA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETYLTRANSFERASE ELAA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ELAA, YFBC, B2267, JW2262; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-ACETYLTRANSFERASE, ACETYL COENZYME A, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.L.SHI,Z.Q.GAO,H.ZHANG,Y.H.DONG REVDAT 2 22-NOV-23 5Z6N 1 REMARK REVDAT 1 30-JAN-19 5Z6N 0 JRNL AUTH L.L.SHI,Z.Q.GAO,H.ZHANG,Y.H.DONG JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI ELAA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 11567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.278 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0480 - 4.1247 1.00 2996 162 0.2310 0.2089 REMARK 3 2 4.1247 - 3.2752 0.86 2517 136 0.3032 0.3817 REMARK 3 3 3.2752 - 2.8616 0.95 2760 152 0.3102 0.3373 REMARK 3 4 2.8616 - 2.6001 0.94 2712 132 0.3108 0.3552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2410 REMARK 3 ANGLE : 1.062 3270 REMARK 3 CHIRALITY : 0.051 359 REMARK 3 PLANARITY : 0.005 424 REMARK 3 DIHEDRAL : 21.813 1425 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -3.6384 3.4762 176.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.1973 T22: 0.1153 REMARK 3 T33: 0.1527 T12: -0.0245 REMARK 3 T13: 0.0251 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 1.1210 L22: 1.3112 REMARK 3 L33: 2.4852 L12: -0.0946 REMARK 3 L13: 0.2184 L23: -0.2678 REMARK 3 S TENSOR REMARK 3 S11: -0.0698 S12: -0.0332 S13: 0.1260 REMARK 3 S21: 0.2480 S22: -0.1228 S23: 0.0272 REMARK 3 S31: 0.2364 S32: 0.1141 S33: 0.1700 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z6N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-18. REMARK 100 THE DEPOSITION ID IS D_1300006565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14550 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JPH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM FLUORIDE, 24%(W/V) REMARK 280 PEG3350, PH 7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.45250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 69 REMARK 465 ASP A 70 REMARK 465 ASP A 71 REMARK 465 GLY A 140 REMARK 465 VAL A 150 REMARK 465 ILE A 151 REMARK 465 GLN A 152 REMARK 465 ALA A 153 REMARK 465 ILE B 141 REMARK 465 VAL B 150 REMARK 465 ILE B 151 REMARK 465 GLN B 152 REMARK 465 ALA B 153 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 89 78.72 -151.27 REMARK 500 LYS A 90 -6.83 74.58 REMARK 500 SER A 97 -48.21 -179.29 REMARK 500 ALA A 116 -159.30 -138.41 REMARK 500 GLN A 117 -92.44 -115.45 REMARK 500 ALA A 118 -51.27 -171.51 REMARK 500 ASP B 42 -2.88 -57.50 REMARK 500 ASP B 57 33.51 76.27 REMARK 500 GLU B 89 38.05 -158.27 REMARK 500 LYS B 90 -10.23 85.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 218 DISTANCE = 6.40 ANGSTROMS DBREF 5Z6N A 1 153 UNP P0AEH3 ELAA_ECOLI 1 153 DBREF 5Z6N B 1 153 UNP P0AEH3 ELAA_ECOLI 1 153 SEQRES 1 A 153 MET ILE GLU TRP GLN ASP LEU HIS HIS SER GLU LEU SER SEQRES 2 A 153 VAL SER GLN LEU TYR ALA LEU LEU GLN LEU ARG CYS ALA SEQRES 3 A 153 VAL PHE VAL VAL GLU GLN ASN CYS PRO TYR GLN ASP ILE SEQRES 4 A 153 ASP GLY ASP ASP LEU THR GLY ASP ASN ARG HIS ILE LEU SEQRES 5 A 153 GLY TRP LYS ASN ASP GLU LEU VAL ALA TYR ALA ARG ILE SEQRES 6 A 153 LEU LYS SER ASP ASP ASP LEU GLU PRO VAL VAL ILE GLY SEQRES 7 A 153 ARG VAL ILE VAL SER GLU ALA LEU ARG GLY GLU LYS VAL SEQRES 8 A 153 GLY GLN GLN LEU MET SER LYS THR LEU GLU THR CYS THR SEQRES 9 A 153 HIS HIS TRP PRO ASP LYS PRO VAL TYR LEU GLY ALA GLN SEQRES 10 A 153 ALA HIS LEU GLN ASN PHE TYR GLN SER PHE GLY PHE ILE SEQRES 11 A 153 PRO VAL THR GLU VAL TYR GLU GLU ASP GLY ILE PRO HIS SEQRES 12 A 153 ILE GLY MET ALA ARG GLU VAL ILE GLN ALA SEQRES 1 B 153 MET ILE GLU TRP GLN ASP LEU HIS HIS SER GLU LEU SER SEQRES 2 B 153 VAL SER GLN LEU TYR ALA LEU LEU GLN LEU ARG CYS ALA SEQRES 3 B 153 VAL PHE VAL VAL GLU GLN ASN CYS PRO TYR GLN ASP ILE SEQRES 4 B 153 ASP GLY ASP ASP LEU THR GLY ASP ASN ARG HIS ILE LEU SEQRES 5 B 153 GLY TRP LYS ASN ASP GLU LEU VAL ALA TYR ALA ARG ILE SEQRES 6 B 153 LEU LYS SER ASP ASP ASP LEU GLU PRO VAL VAL ILE GLY SEQRES 7 B 153 ARG VAL ILE VAL SER GLU ALA LEU ARG GLY GLU LYS VAL SEQRES 8 B 153 GLY GLN GLN LEU MET SER LYS THR LEU GLU THR CYS THR SEQRES 9 B 153 HIS HIS TRP PRO ASP LYS PRO VAL TYR LEU GLY ALA GLN SEQRES 10 B 153 ALA HIS LEU GLN ASN PHE TYR GLN SER PHE GLY PHE ILE SEQRES 11 B 153 PRO VAL THR GLU VAL TYR GLU GLU ASP GLY ILE PRO HIS SEQRES 12 B 153 ILE GLY MET ALA ARG GLU VAL ILE GLN ALA FORMUL 3 HOH *43(H2 O) HELIX 1 AA1 SER A 10 LEU A 12 5 3 HELIX 2 AA2 SER A 13 VAL A 29 1 17 HELIX 3 AA3 GLU A 84 ARG A 87 5 4 HELIX 4 AA4 LYS A 90 TRP A 107 1 18 HELIX 5 AA5 LEU A 120 SER A 126 1 7 HELIX 6 AA6 SER B 10 LEU B 12 5 3 HELIX 7 AA7 SER B 13 VAL B 29 1 17 HELIX 8 AA8 GLU B 84 ARG B 87 5 4 HELIX 9 AA9 LYS B 90 TRP B 107 1 18 HELIX 10 AB1 LEU B 120 GLN B 125 1 6 SHEET 1 AA1 7 GLU A 3 HIS A 8 0 SHEET 2 AA1 7 ARG A 49 LYS A 55 -1 O TRP A 54 N GLU A 3 SHEET 3 AA1 7 GLU A 58 LEU A 66 -1 O ALA A 63 N ILE A 51 SHEET 4 AA1 7 VAL A 75 VAL A 82 -1 O ILE A 81 N TYR A 62 SHEET 5 AA1 7 VAL A 112 ALA A 116 1 O TYR A 113 N VAL A 75 SHEET 6 AA1 7 PRO A 142 ARG A 148 -1 O ARG A 148 N VAL A 112 SHEET 7 AA1 7 ILE A 130 PRO A 131 -1 N ILE A 130 O ALA A 147 SHEET 1 AA2 7 GLU A 3 HIS A 8 0 SHEET 2 AA2 7 ARG A 49 LYS A 55 -1 O TRP A 54 N GLU A 3 SHEET 3 AA2 7 GLU A 58 LEU A 66 -1 O ALA A 63 N ILE A 51 SHEET 4 AA2 7 VAL A 75 VAL A 82 -1 O ILE A 81 N TYR A 62 SHEET 5 AA2 7 VAL A 112 ALA A 116 1 O TYR A 113 N VAL A 75 SHEET 6 AA2 7 PRO A 142 ARG A 148 -1 O ARG A 148 N VAL A 112 SHEET 7 AA2 7 TYR A 136 GLU A 137 -1 N TYR A 136 O HIS A 143 SHEET 1 AA3 7 GLU B 3 HIS B 8 0 SHEET 2 AA3 7 ARG B 49 TRP B 54 -1 O HIS B 50 N LEU B 7 SHEET 3 AA3 7 LEU B 59 LYS B 67 -1 O ALA B 61 N GLY B 53 SHEET 4 AA3 7 VAL B 75 VAL B 82 -1 O ILE B 81 N TYR B 62 SHEET 5 AA3 7 VAL B 112 GLN B 117 1 O TYR B 113 N VAL B 75 SHEET 6 AA3 7 HIS B 143 ARG B 148 -1 O MET B 146 N LEU B 114 SHEET 7 AA3 7 PHE B 129 PRO B 131 -1 N ILE B 130 O ALA B 147 CISPEP 1 SER B 68 ASP B 69 0 -10.36 CRYST1 60.149 40.905 84.648 90.00 108.30 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016625 0.000000 0.005497 0.00000 SCALE2 0.000000 0.024447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012443 0.00000