HEADER TRANSFERASE 31-JAN-18 5Z8A TITLE CRYSTAL STRUCTURE OF GENB1 FROM MICROMONOSPORA ECHINOSPORA IN COMPLEX TITLE 2 WITH JI-20A AND PLP (EXTERNAL ALDIMINE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-6' AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GENTAMICIN (HEXOSAMINYL-6-) AMINOTRANSFERASE I,GNTW,PUTATIVE COMPND 5 GLUTAMATE-1-SEMIALDEHYDE AMINOTRANSFERASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROMONOSPORA ECHINOSPORA; SOURCE 3 ORGANISM_COMMON: MICROMONOSPORA PURPUREA; SOURCE 4 ORGANISM_TAXID: 1877; SOURCE 5 GENE: GACK, GENB1, GNTW; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOTRANSFERASE, PLP-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.HONG,S.S.CHA REVDAT 4 27-MAR-24 5Z8A 1 COMPND HETNAM REVDAT 3 27-FEB-19 5Z8A 1 JRNL REVDAT 2 30-JAN-19 5Z8A 1 JRNL REVDAT 1 16-JAN-19 5Z8A 0 JRNL AUTH Y.H.BAN,M.C.SONG,J.Y.HWANG,H.L.SHIN,H.J.KIM,S.K.HONG, JRNL AUTH 2 N.J.LEE,J.W.PARK,S.S.CHA,H.W.LIU,Y.J.YOON JRNL TITL COMPLETE RECONSTITUTION OF THE DIVERSE PATHWAYS OF JRNL TITL 2 GENTAMICIN B BIOSYNTHESIS. JRNL REF NAT. CHEM. BIOL. V. 15 295 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 30643280 JRNL DOI 10.1038/S41589-018-0203-4 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2474 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.510 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 144352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.390 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3940 - 3.3682 0.89 10463 147 0.1511 0.1646 REMARK 3 2 3.3682 - 2.6742 1.00 11335 159 0.1620 0.1715 REMARK 3 3 2.6742 - 2.3364 1.00 11280 159 0.1670 0.2000 REMARK 3 4 2.3364 - 2.1228 0.97 10880 153 0.1708 0.2139 REMARK 3 5 2.1228 - 1.9707 1.00 11201 157 0.1755 0.1930 REMARK 3 6 1.9707 - 1.8546 0.99 11015 155 0.1911 0.1915 REMARK 3 7 1.8546 - 1.7617 0.99 11120 156 0.1835 0.2158 REMARK 3 8 1.7617 - 1.6850 0.99 11023 155 0.1809 0.2174 REMARK 3 9 1.6850 - 1.6202 0.99 11005 155 0.1797 0.2039 REMARK 3 10 1.6202 - 1.5643 0.98 10914 153 0.1863 0.2208 REMARK 3 11 1.5643 - 1.5154 0.94 10492 147 0.1906 0.2318 REMARK 3 12 1.5154 - 1.4720 0.80 8917 126 0.1983 0.2192 REMARK 3 13 1.4720 - 1.4333 0.65 7251 101 0.2192 0.2223 REMARK 3 14 1.4333 - 1.3983 0.49 5456 77 0.2260 0.2879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6454 REMARK 3 ANGLE : 0.754 8810 REMARK 3 CHIRALITY : 0.074 986 REMARK 3 PLANARITY : 0.005 1160 REMARK 3 DIHEDRAL : 26.982 2250 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5Z8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144352 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.398 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM FORMATE, PEG3350, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.42450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.34350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.42450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.88250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.34350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 GLY A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ASP A 417 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 ASP B 4 REMARK 465 ILE B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 168 70.59 -117.98 REMARK 500 ALA A 231 -58.93 -163.96 REMARK 500 ALA A 235 20.40 -143.90 REMARK 500 LEU A 316 117.71 -161.97 REMARK 500 ARG B 168 68.85 -118.51 REMARK 500 ALA B 231 -57.79 -163.65 REMARK 500 ALA B 235 22.89 -147.24 REMARK 500 LEU B 316 117.41 -161.37 REMARK 500 ASP B 345 -159.89 -131.24 REMARK 500 ASP B 378 34.80 -97.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1060 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1061 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A1062 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B1102 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1103 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B1104 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues PLP A 501 and JIA A REMARK 800 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues PLP B 501 and JIA B REMARK 800 502 DBREF 5Z8A A 1 417 UNP Q70KD9 Q70KD9_MICEC 1 417 DBREF 5Z8A B 1 417 UNP Q70KD9 Q70KD9_MICEC 1 417 SEQADV 5Z8A MET A -19 UNP Q70KD9 INITIATING METHIONINE SEQADV 5Z8A GLY A -18 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER A -17 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER A -16 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -15 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -14 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -13 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -12 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -11 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A -10 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER A -9 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER A -8 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A GLY A -7 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A LEU A -6 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A VAL A -5 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A PRO A -4 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A ARG A -3 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A GLY A -2 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER A -1 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS A 0 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A MET B -19 UNP Q70KD9 INITIATING METHIONINE SEQADV 5Z8A GLY B -18 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER B -17 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER B -16 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -15 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -14 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -13 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -12 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -11 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B -10 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER B -9 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER B -8 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A GLY B -7 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A LEU B -6 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A VAL B -5 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A PRO B -4 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A ARG B -3 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A GLY B -2 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A SER B -1 UNP Q70KD9 EXPRESSION TAG SEQADV 5Z8A HIS B 0 UNP Q70KD9 EXPRESSION TAG SEQRES 1 A 437 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 437 LEU VAL PRO ARG GLY SER HIS MET THR ILE ASP ILE GLY SEQRES 3 A 437 ALA GLY LYS LEU LEU ALA GLN GLU PRO THR CYS PRO ARG SEQRES 4 A 437 ASP ALA ASP GLY ARG PRO ARG VAL PHE VAL GLU GLY SER SEQRES 5 A 437 GLY ALA TYR LEU THR ASP PRO ASP GLY ARG ARG TRP ILE SEQRES 6 A 437 ASP PHE ASP ASN ALA ARG GLY SER VAL VAL LEU GLY HIS SEQRES 7 A 437 GLY ASP GLU GLU VAL ALA GLU ALA ILE ALA ARG ALA ALA SEQRES 8 A 437 ARG GLY ARG SER GLY VAL GLY THR ALA TRP SER PRO VAL SEQRES 9 A 437 LEU ASP SER LEU LEU GLY GLN LEU GLN GLU VAL CYS GLY SEQRES 10 A 437 GLY ASP VAL VAL GLY LEU TYR ARG THR GLY THR ALA ALA SEQRES 11 A 437 LEU ARG SER VAL THR CYS ALA VAL ARG ASP ALA ARG ASP SEQRES 12 A 437 ARG SER ILE VAL LEU SER SER GLY TYR HIS GLY TYR ASP SEQRES 13 A 437 PRO MET TRP HIS CYS ASP GLU PRO PHE THR PRO ASN GLN SEQRES 14 A 437 HIS GLY ILE VAL GLU PHE LEU PHE ASP LEU ASP VAL LEU SEQRES 15 A 437 ALA GLU TRP LEU SER ARG PRO GLU GLN VAL ALA ALA VAL SEQRES 16 A 437 VAL ILE SER PRO ASP HIS MET HIS LEU GLY GLU ARG TRP SEQRES 17 A 437 TYR THR GLU PHE THR ARG LEU THR LYS GLU ALA ASP VAL SEQRES 18 A 437 PRO VAL ILE ALA ASP GLU VAL LYS VAL GLY LEU ARG TYR SEQRES 19 A 437 ARG ALA GLY LEU SER THR PRO LEU LEU ASP PRO ALA VAL SEQRES 20 A 437 TRP ILE VAL ALA LYS CYS LEU ALA ASN GLY SER PRO VAL SEQRES 21 A 437 ALA ALA VAL GLY GLY ASP ALA HIS LEU LEU ALA ALA LEU SEQRES 22 A 437 GLU ASP VAL SER PHE THR SER TYR PHE GLU PRO THR ALA SEQRES 23 A 437 MET ALA ALA ALA THR THR THR LEU ARG ARG MET ALA THR SEQRES 24 A 437 GLY GLU PRO GLN GLN ALA ILE ARG ALA ALA GLY ASP ARG SEQRES 25 A 437 PHE ILE ALA HIS THR ARG ALA ALA PHE ALA ASN ALA GLY SEQRES 26 A 437 VAL PRO ILE ASP LEU ALA GLY ASN GLY ASN LEU PHE GLN SEQRES 27 A 437 PHE VAL CYS ALA ASP ASP GLU VAL ALA ASP ALA PHE HIS SEQRES 28 A 437 ALA ALA ALA ALA ALA GLU GLY LEU LEU PHE PHE GLU GLY SEQRES 29 A 437 ASP ASN GLN THR PRO SER ALA ALA PHE THR ASP GLU VAL SEQRES 30 A 437 VAL GLU ASP ALA CYS GLY ARG ILE ASP ARG VAL SER ALA SEQRES 31 A 437 ALA LEU THR GLY ARG PHE THR ASP ARG GLU LEU THR GLU SEQRES 32 A 437 GLU SER TRP TYR ALA SER ALA TRP GLY ALA MET ASP GLY SEQRES 33 A 437 LEU ALA ASP ARG PRO ARG THR ARG GLU GLU THR THR ALA SEQRES 34 A 437 ILE VAL GLU ARG LEU TRP GLU ASP SEQRES 1 B 437 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 437 LEU VAL PRO ARG GLY SER HIS MET THR ILE ASP ILE GLY SEQRES 3 B 437 ALA GLY LYS LEU LEU ALA GLN GLU PRO THR CYS PRO ARG SEQRES 4 B 437 ASP ALA ASP GLY ARG PRO ARG VAL PHE VAL GLU GLY SER SEQRES 5 B 437 GLY ALA TYR LEU THR ASP PRO ASP GLY ARG ARG TRP ILE SEQRES 6 B 437 ASP PHE ASP ASN ALA ARG GLY SER VAL VAL LEU GLY HIS SEQRES 7 B 437 GLY ASP GLU GLU VAL ALA GLU ALA ILE ALA ARG ALA ALA SEQRES 8 B 437 ARG GLY ARG SER GLY VAL GLY THR ALA TRP SER PRO VAL SEQRES 9 B 437 LEU ASP SER LEU LEU GLY GLN LEU GLN GLU VAL CYS GLY SEQRES 10 B 437 GLY ASP VAL VAL GLY LEU TYR ARG THR GLY THR ALA ALA SEQRES 11 B 437 LEU ARG SER VAL THR CYS ALA VAL ARG ASP ALA ARG ASP SEQRES 12 B 437 ARG SER ILE VAL LEU SER SER GLY TYR HIS GLY TYR ASP SEQRES 13 B 437 PRO MET TRP HIS CYS ASP GLU PRO PHE THR PRO ASN GLN SEQRES 14 B 437 HIS GLY ILE VAL GLU PHE LEU PHE ASP LEU ASP VAL LEU SEQRES 15 B 437 ALA GLU TRP LEU SER ARG PRO GLU GLN VAL ALA ALA VAL SEQRES 16 B 437 VAL ILE SER PRO ASP HIS MET HIS LEU GLY GLU ARG TRP SEQRES 17 B 437 TYR THR GLU PHE THR ARG LEU THR LYS GLU ALA ASP VAL SEQRES 18 B 437 PRO VAL ILE ALA ASP GLU VAL LYS VAL GLY LEU ARG TYR SEQRES 19 B 437 ARG ALA GLY LEU SER THR PRO LEU LEU ASP PRO ALA VAL SEQRES 20 B 437 TRP ILE VAL ALA LYS CYS LEU ALA ASN GLY SER PRO VAL SEQRES 21 B 437 ALA ALA VAL GLY GLY ASP ALA HIS LEU LEU ALA ALA LEU SEQRES 22 B 437 GLU ASP VAL SER PHE THR SER TYR PHE GLU PRO THR ALA SEQRES 23 B 437 MET ALA ALA ALA THR THR THR LEU ARG ARG MET ALA THR SEQRES 24 B 437 GLY GLU PRO GLN GLN ALA ILE ARG ALA ALA GLY ASP ARG SEQRES 25 B 437 PHE ILE ALA HIS THR ARG ALA ALA PHE ALA ASN ALA GLY SEQRES 26 B 437 VAL PRO ILE ASP LEU ALA GLY ASN GLY ASN LEU PHE GLN SEQRES 27 B 437 PHE VAL CYS ALA ASP ASP GLU VAL ALA ASP ALA PHE HIS SEQRES 28 B 437 ALA ALA ALA ALA ALA GLU GLY LEU LEU PHE PHE GLU GLY SEQRES 29 B 437 ASP ASN GLN THR PRO SER ALA ALA PHE THR ASP GLU VAL SEQRES 30 B 437 VAL GLU ASP ALA CYS GLY ARG ILE ASP ARG VAL SER ALA SEQRES 31 B 437 ALA LEU THR GLY ARG PHE THR ASP ARG GLU LEU THR GLU SEQRES 32 B 437 GLU SER TRP TYR ALA SER ALA TRP GLY ALA MET ASP GLY SEQRES 33 B 437 LEU ALA ASP ARG PRO ARG THR ARG GLU GLU THR THR ALA SEQRES 34 B 437 ILE VAL GLU ARG LEU TRP GLU ASP HET PLP A 501 15 HET JIA A 502 33 HET PLP B 501 15 HET JIA B 502 33 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM JIA (2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S}, HETNAM 2 JIA 6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6- HETNAM 3 JIA (AMINOMETHYL)-3-AZANY L-4,5-BIS(OXIDANYL)OXAN-2- HETNAM 4 JIA YL]OXY-4,6-BIS(AZANYL)-2-OXIDANYL-CYCLOHEXYL]OXY-5- HETNAM 5 JIA METHYL-4-(METHYLAMINO)OXANE-3,5-DIOL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN JIA JI-20A FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 JIA 2(C19 H39 N5 O9) FORMUL 7 HOH *966(H2 O) HELIX 1 AA1 ASP A 48 SER A 53 1 6 HELIX 2 AA2 ASP A 60 ARG A 72 1 13 HELIX 3 AA3 SER A 82 GLY A 97 1 16 HELIX 4 AA4 THR A 106 ASP A 123 1 18 HELIX 5 AA5 ASP A 136 HIS A 140 5 5 HELIX 6 AA6 ASP A 158 SER A 167 1 10 HELIX 7 AA7 ARG A 168 GLU A 170 5 3 HELIX 8 AA8 GLY A 185 ASP A 200 1 16 HELIX 9 AA9 ALA A 247 VAL A 256 5 10 HELIX 10 AB1 GLU A 263 ALA A 278 1 16 HELIX 11 AB2 GLY A 280 ASN A 303 1 24 HELIX 12 AB3 ASP A 323 GLU A 337 1 15 HELIX 13 AB4 THR A 354 THR A 373 1 20 HELIX 14 AB5 THR A 382 ASP A 395 1 14 HELIX 15 AB6 THR A 403 TRP A 415 1 13 HELIX 16 AB7 ASP B 48 SER B 53 1 6 HELIX 17 AB8 ASP B 60 ARG B 72 1 13 HELIX 18 AB9 VAL B 84 GLY B 97 1 14 HELIX 19 AC1 THR B 106 ASP B 123 1 18 HELIX 20 AC2 ASP B 136 HIS B 140 5 5 HELIX 21 AC3 ASP B 158 SER B 167 1 10 HELIX 22 AC4 ARG B 168 GLU B 170 5 3 HELIX 23 AC5 GLY B 185 ASP B 200 1 16 HELIX 24 AC6 ALA B 247 VAL B 256 5 10 HELIX 25 AC7 GLU B 263 ALA B 278 1 16 HELIX 26 AC8 GLY B 280 GLY B 305 1 26 HELIX 27 AC9 ASP B 323 GLU B 337 1 15 HELIX 28 AD1 THR B 354 THR B 373 1 20 HELIX 29 AD2 THR B 382 ASP B 395 1 14 HELIX 30 AD3 THR B 403 TRP B 415 1 13 SHEET 1 AA1 4 GLU A 30 SER A 32 0 SHEET 2 AA1 4 TYR A 35 THR A 37 -1 O TYR A 35 N SER A 32 SHEET 3 AA1 4 ARG A 43 ASP A 46 -1 O TRP A 44 N LEU A 36 SHEET 4 AA1 4 LEU A 339 LEU A 340 1 O LEU A 340 N ILE A 45 SHEET 1 AA2 7 VAL A 100 TYR A 104 0 SHEET 2 AA2 7 ALA A 241 GLY A 245 -1 O ALA A 241 N TYR A 104 SHEET 3 AA2 7 VAL A 227 VAL A 230 -1 N VAL A 230 O ALA A 242 SHEET 4 AA2 7 VAL A 203 GLU A 207 1 N ALA A 205 O VAL A 227 SHEET 5 AA2 7 VAL A 172 ILE A 177 1 N VAL A 175 O ILE A 204 SHEET 6 AA2 7 ILE A 126 SER A 130 1 N LEU A 128 O VAL A 176 SHEET 7 AA2 7 ILE A 152 GLU A 154 1 O VAL A 153 N SER A 129 SHEET 1 AA3 2 ILE A 308 ASN A 313 0 SHEET 2 AA3 2 LEU A 316 CYS A 321 -1 O VAL A 320 N ASP A 309 SHEET 1 AA4 4 GLU B 30 SER B 32 0 SHEET 2 AA4 4 TYR B 35 THR B 37 -1 O THR B 37 N GLU B 30 SHEET 3 AA4 4 ARG B 43 ASP B 46 -1 O TRP B 44 N LEU B 36 SHEET 4 AA4 4 LEU B 339 LEU B 340 1 O LEU B 340 N ILE B 45 SHEET 1 AA5 7 VAL B 100 TYR B 104 0 SHEET 2 AA5 7 ALA B 241 GLY B 245 -1 O ALA B 241 N TYR B 104 SHEET 3 AA5 7 VAL B 227 VAL B 230 -1 N VAL B 230 O ALA B 242 SHEET 4 AA5 7 VAL B 203 GLU B 207 1 N ALA B 205 O VAL B 227 SHEET 5 AA5 7 VAL B 172 ILE B 177 1 N VAL B 175 O ILE B 204 SHEET 6 AA5 7 ILE B 126 SER B 130 1 N LEU B 128 O VAL B 176 SHEET 7 AA5 7 ILE B 152 GLU B 154 1 O VAL B 153 N SER B 129 SHEET 1 AA6 2 ILE B 308 ASN B 313 0 SHEET 2 AA6 2 LEU B 316 CYS B 321 -1 O VAL B 320 N ASP B 309 LINK C4A PLP A 501 N02 JIA A 502 1555 1555 1.33 LINK C4A PLP B 501 N02 JIA B 502 1555 1555 1.40 SITE 1 AC1 27 THR A 16 ARG A 51 THR A 106 GLY A 107 SITE 2 AC1 27 THR A 108 TYR A 132 HIS A 133 GLY A 134 SITE 3 AC1 27 SER A 178 ASP A 206 VAL A 208 LYS A 209 SITE 4 AC1 27 LYS A 232 PHE A 342 ASP A 345 ASN A 346 SITE 5 AC1 27 ALA A 393 ASP A 395 HOH A 662 HOH A 675 SITE 6 AC1 27 HOH A 686 HOH A 713 HOH A 718 HOH A 801 SITE 7 AC1 27 PHE B 258 THR B 259 HOH B 805 SITE 1 AC2 27 PHE A 258 THR A 259 HOH A 684 THR B 16 SITE 2 AC2 27 ARG B 51 THR B 106 GLY B 107 THR B 108 SITE 3 AC2 27 TYR B 132 HIS B 133 GLY B 134 SER B 178 SITE 4 AC2 27 ASP B 206 VAL B 208 LYS B 209 LYS B 232 SITE 5 AC2 27 PHE B 342 ASP B 345 ASN B 346 ALA B 393 SITE 6 AC2 27 ASP B 395 GLU B 416 HOH B 656 HOH B 701 SITE 7 AC2 27 HOH B 721 HOH B 742 HOH B 754 CRYST1 77.765 88.687 116.849 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008558 0.00000