data_5ZAS # _entry.id 5ZAS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZAS pdb_00005zas 10.2210/pdb5zas/pdb WWPDB D_1300006772 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-02-13 2 'Structure model' 1 1 2019-08-28 3 'Structure model' 1 2 2019-09-18 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.journal_id_ISSN' 9 3 'Structure model' '_citation.journal_volume' 10 3 'Structure model' '_citation.page_first' 11 3 'Structure model' '_citation.page_last' 12 3 'Structure model' '_citation.pdbx_database_id_PubMed' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_citation_author.identifier_ORCID' 15 3 'Structure model' '_citation_author.name' 16 4 'Structure model' '_database_2.pdbx_DOI' 17 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ZAS _pdbx_database_status.recvd_initial_deposition_date 2018-02-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fu, T.R.' 1 ? 'Zhang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 7407 _citation.page_last 7417 _citation.title 'Thymine DNA glycosylase recognizes the geometry alteration of minor grooves induced by 5-formylcytosine and 5-carboxylcytosine.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c9sc02807b _citation.pdbx_database_id_PubMed 31489163 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fu, T.' 1 ? primary 'Liu, L.' 2 ? primary 'Yang, Q.L.' 3 ? primary 'Wang, Y.' 4 0000-0003-3892-7242 primary 'Xu, P.' 5 ? primary 'Zhang, L.' 6 0000-0002-3076-6993 primary 'Liu, S.' 7 ? primary 'Dai, Q.' 8 ? primary 'Ji, Q.' 9 0000-0002-2321-8462 primary 'Xu, G.L.' 10 ? primary 'He, C.' 11 ? primary 'Luo, C.' 12 0000-0003-3864-8382 primary 'Zhang, L.' 13 0000-0002-7672-1168 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*(5FC)P*GP*CP*TP*GP*G)-3') ; 3074.002 2 ? ? ? ? 2 non-polymer syn 'BICARBONATE ION' 61.017 2 ? ? ? ? 3 water nat water 18.015 118 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DG)(5FC)(DG)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGCGCTGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BICARBONATE ION' BCT 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 5FC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5FC 'DNA linking' n "5-FORMYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" "2'-DEOXY-5-FORMYLCYTIDINE-5'-MONOPHOSPHATE" 'C10 H14 N3 O8 P' 335.207 BCT non-polymer . 'BICARBONATE ION' ? 'C H O3 -1' 61.017 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 5FC 5 5 5 5FC 5fC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n B 1 1 DC 1 11 11 DC DC B . n B 1 2 DC 2 12 12 DC DC B . n B 1 3 DA 3 13 13 DA DA B . n B 1 4 DG 4 14 14 DG DG B . n B 1 5 5FC 5 15 15 5FC 5fC B . n B 1 6 DG 6 16 16 DG DG B . n B 1 7 DC 7 17 17 DC DC B . n B 1 8 DT 8 18 18 DT DT B . n B 1 9 DG 9 19 19 DG DG B . n B 1 10 DG 10 20 20 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BCT 1 101 498 BCT BCT A . D 2 BCT 1 102 499 BCT BCT A . E 3 HOH 1 201 54 HOH HOH A . E 3 HOH 2 202 63 HOH HOH A . E 3 HOH 3 203 16 HOH HOH A . E 3 HOH 4 204 33 HOH HOH A . E 3 HOH 5 205 90 HOH HOH A . E 3 HOH 6 206 69 HOH HOH A . E 3 HOH 7 207 79 HOH HOH A . E 3 HOH 8 208 15 HOH HOH A . E 3 HOH 9 209 70 HOH HOH A . E 3 HOH 10 210 9 HOH HOH A . E 3 HOH 11 211 113 HOH HOH A . E 3 HOH 12 212 72 HOH HOH A . E 3 HOH 13 213 18 HOH HOH A . E 3 HOH 14 214 2 HOH HOH A . E 3 HOH 15 215 25 HOH HOH A . E 3 HOH 16 216 35 HOH HOH A . E 3 HOH 17 217 78 HOH HOH A . E 3 HOH 18 218 107 HOH HOH A . E 3 HOH 19 219 31 HOH HOH A . E 3 HOH 20 220 22 HOH HOH A . E 3 HOH 21 221 3 HOH HOH A . E 3 HOH 22 222 56 HOH HOH A . E 3 HOH 23 223 37 HOH HOH A . E 3 HOH 24 224 102 HOH HOH A . E 3 HOH 25 225 5 HOH HOH A . E 3 HOH 26 226 41 HOH HOH A . E 3 HOH 27 227 47 HOH HOH A . E 3 HOH 28 228 68 HOH HOH A . E 3 HOH 29 229 19 HOH HOH A . E 3 HOH 30 230 50 HOH HOH A . E 3 HOH 31 231 85 HOH HOH A . E 3 HOH 32 232 64 HOH HOH A . E 3 HOH 33 233 112 HOH HOH A . E 3 HOH 34 234 17 HOH HOH A . E 3 HOH 35 235 6 HOH HOH A . E 3 HOH 36 236 26 HOH HOH A . E 3 HOH 37 237 7 HOH HOH A . E 3 HOH 38 238 40 HOH HOH A . E 3 HOH 39 239 115 HOH HOH A . E 3 HOH 40 240 118 HOH HOH A . E 3 HOH 41 241 20 HOH HOH A . E 3 HOH 42 242 36 HOH HOH A . E 3 HOH 43 243 94 HOH HOH A . E 3 HOH 44 244 42 HOH HOH A . E 3 HOH 45 245 24 HOH HOH A . E 3 HOH 46 246 67 HOH HOH A . E 3 HOH 47 247 77 HOH HOH A . E 3 HOH 48 248 111 HOH HOH A . E 3 HOH 49 249 49 HOH HOH A . E 3 HOH 50 250 65 HOH HOH A . E 3 HOH 51 251 23 HOH HOH A . E 3 HOH 52 252 1 HOH HOH A . E 3 HOH 53 253 76 HOH HOH A . E 3 HOH 54 254 93 HOH HOH A . E 3 HOH 55 255 51 HOH HOH A . E 3 HOH 56 256 30 HOH HOH A . E 3 HOH 57 257 116 HOH HOH A . E 3 HOH 58 258 73 HOH HOH A . E 3 HOH 59 259 61 HOH HOH A . E 3 HOH 60 260 58 HOH HOH A . E 3 HOH 61 261 103 HOH HOH A . E 3 HOH 62 262 74 HOH HOH A . E 3 HOH 63 263 110 HOH HOH A . E 3 HOH 64 264 59 HOH HOH A . E 3 HOH 65 265 57 HOH HOH A . E 3 HOH 66 266 101 HOH HOH A . E 3 HOH 67 267 92 HOH HOH A . E 3 HOH 68 268 108 HOH HOH A . E 3 HOH 69 269 86 HOH HOH A . F 3 HOH 1 101 117 HOH HOH B . F 3 HOH 2 102 39 HOH HOH B . F 3 HOH 3 103 75 HOH HOH B . F 3 HOH 4 104 53 HOH HOH B . F 3 HOH 5 105 14 HOH HOH B . F 3 HOH 6 106 97 HOH HOH B . F 3 HOH 7 107 10 HOH HOH B . F 3 HOH 8 108 21 HOH HOH B . F 3 HOH 9 109 52 HOH HOH B . F 3 HOH 10 110 89 HOH HOH B . F 3 HOH 11 111 48 HOH HOH B . F 3 HOH 12 112 96 HOH HOH B . F 3 HOH 13 113 32 HOH HOH B . F 3 HOH 14 114 34 HOH HOH B . F 3 HOH 15 115 11 HOH HOH B . F 3 HOH 16 116 45 HOH HOH B . F 3 HOH 17 117 71 HOH HOH B . F 3 HOH 18 118 29 HOH HOH B . F 3 HOH 19 119 4 HOH HOH B . F 3 HOH 20 120 80 HOH HOH B . F 3 HOH 21 121 100 HOH HOH B . F 3 HOH 22 122 84 HOH HOH B . F 3 HOH 23 123 66 HOH HOH B . F 3 HOH 24 124 44 HOH HOH B . F 3 HOH 25 125 83 HOH HOH B . F 3 HOH 26 126 12 HOH HOH B . F 3 HOH 27 127 13 HOH HOH B . F 3 HOH 28 128 114 HOH HOH B . F 3 HOH 29 129 27 HOH HOH B . F 3 HOH 30 130 60 HOH HOH B . F 3 HOH 31 131 43 HOH HOH B . F 3 HOH 32 132 104 HOH HOH B . F 3 HOH 33 133 62 HOH HOH B . F 3 HOH 34 134 82 HOH HOH B . F 3 HOH 35 135 8 HOH HOH B . F 3 HOH 36 136 106 HOH HOH B . F 3 HOH 37 137 81 HOH HOH B . F 3 HOH 38 138 28 HOH HOH B . F 3 HOH 39 139 91 HOH HOH B . F 3 HOH 40 140 55 HOH HOH B . F 3 HOH 41 141 38 HOH HOH B . F 3 HOH 42 142 109 HOH HOH B . F 3 HOH 43 143 98 HOH HOH B . F 3 HOH 44 144 88 HOH HOH B . F 3 HOH 45 145 46 HOH HOH B . F 3 HOH 46 146 99 HOH HOH B . F 3 HOH 47 147 105 HOH HOH B . F 3 HOH 48 148 95 HOH HOH B . F 3 HOH 49 149 87 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 5.8.0135 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5ZAS _cell.details ? _cell.formula_units_Z ? _cell.length_a 54.548 _cell.length_a_esd ? _cell.length_b 54.548 _cell.length_b_esd ? _cell.length_c 45.819 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ZAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZAS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.20 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 61.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50mM cacodylate pH 6.0, 20mM magnesium acetate, 0.5mM spermine, 100mM NaCl, 25% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 180 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 300K' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9676 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9676 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5ZAS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.56 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11176 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 37.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.62 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.00 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][2] -0.00 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.01 _refine.B_iso_max ? _refine.B_iso_mean 23.583 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.973 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5ZAS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.56 _refine.ls_d_res_low 47.24 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10569 _refine.ls_number_reflns_R_free 526 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.62 _refine.ls_percent_reflns_R_free 4.7 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.14736 _refine.ls_R_factor_R_free 0.16210 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.14666 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.071 _refine.pdbx_overall_ESU_R_Free 0.058 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.183 _refine.overall_SU_ML 0.036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 408 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 118 _refine_hist.number_atoms_total 534 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 47.24 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.012 458 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 228 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.338 1.332 690 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.594 3.000 536 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.058 0.200 60 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 250 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 110 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.045 2.165 458 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.059 2.167 459 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.514 3.257 691 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 2.970 22.995 805 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 2.229 21.616 724 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 3.164 3.000 686 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 22.413 5.000 16 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 7.948 5.000 746 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.560 _refine_ls_shell.d_res_low 1.600 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 51 _refine_ls_shell.number_reflns_R_work 760 _refine_ls_shell.percent_reflns_obs 99.51 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.201 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.146 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5ZAS _struct.title 'Crystal structure of 5-formylcytosine containing decamer dsDNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZAS _struct_keywords.text 'Cytosine modification, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5ZAS _struct_ref.pdbx_db_accession 5ZAS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ZAS A 1 ? 10 ? 5ZAS 1 ? 10 ? 1 10 2 1 5ZAS B 1 ? 10 ? 5ZAS 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2590 ? 1 MORE 4 ? 1 'SSA (A^2)' 3480 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A 5FC 5 P ? ? A DG 4 A 5FC 5 1_555 ? ? ? ? ? ? ? 1.716 ? ? covale2 covale both ? A 5FC 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5FC 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.714 ? ? covale3 covale both ? B DG 4 "O3'" ? ? ? 1_555 B 5FC 5 P ? ? B DG 14 B 5FC 15 1_555 ? ? ? ? ? ? ? 1.700 ? ? covale4 covale both ? B 5FC 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5FC 15 B DG 16 1_555 ? ? ? ? ? ? ? 1.706 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 5FC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5FC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5FC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5FC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5FC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5FC 5 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B 5FC 5 N3 ? ? A DG 6 B 5FC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B 5FC 5 O2 ? ? A DG 6 B 5FC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B 5FC 5 N4 ? ? A DG 6 B 5FC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BCT 101 ? 7 'binding site for residue BCT A 101' AC2 Software A BCT 102 ? 6 'binding site for residue BCT A 102' AC3 Software B DG 14 ? 18 'binding site for Di-nucleotide DG B 14 and 5FC B 15' AC4 Software B 5FC 15 ? 20 'binding site for Di-nucleotide 5FC B 15 and DG B 16' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 5FC A 5 ? 5FC A 5 . ? 1_555 ? 2 AC1 7 HOH E . ? HOH A 201 . ? 1_555 ? 3 AC1 7 HOH E . ? HOH A 209 . ? 1_555 ? 4 AC1 7 HOH E . ? HOH A 215 . ? 1_555 ? 5 AC1 7 HOH E . ? HOH A 229 . ? 1_555 ? 6 AC1 7 5FC B 5 ? 5FC B 15 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH B 119 . ? 1_555 ? 8 AC2 6 DC A 2 ? DC A 2 . ? 1_555 ? 9 AC2 6 DA A 3 ? DA A 3 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 204 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 205 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 241 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH B 109 . ? 1_555 ? 14 AC3 18 DC A 1 ? DC A 1 . ? 6_555 ? 15 AC3 18 DG A 6 ? DG A 6 . ? 1_555 ? 16 AC3 18 DC A 7 ? DC A 7 . ? 1_555 ? 17 AC3 18 DT A 8 ? DT A 8 . ? 1_555 ? 18 AC3 18 BCT C . ? BCT A 101 . ? 1_555 ? 19 AC3 18 HOH E . ? HOH A 201 . ? 1_555 ? 20 AC3 18 DA B 3 ? DA B 13 . ? 1_555 ? 21 AC3 18 DG B 6 ? DG B 16 . ? 1_555 ? 22 AC3 18 DG B 10 ? DG B 20 . ? 6_555 ? 23 AC3 18 HOH F . ? HOH B 108 . ? 1_555 ? 24 AC3 18 HOH F . ? HOH B 110 . ? 1_555 ? 25 AC3 18 HOH F . ? HOH B 116 . ? 1_555 ? 26 AC3 18 HOH F . ? HOH B 128 . ? 1_555 ? 27 AC3 18 HOH F . ? HOH B 131 . ? 1_555 ? 28 AC3 18 HOH F . ? HOH B 132 . ? 1_555 ? 29 AC3 18 HOH F . ? HOH B 133 . ? 1_555 ? 30 AC3 18 HOH F . ? HOH B 137 . ? 1_555 ? 31 AC3 18 HOH F . ? HOH B 139 . ? 1_555 ? 32 AC4 20 DG A 4 ? DG A 4 . ? 1_555 ? 33 AC4 20 5FC A 5 ? 5FC A 5 . ? 1_555 ? 34 AC4 20 DG A 6 ? DG A 6 . ? 1_555 ? 35 AC4 20 DC A 7 ? DC A 7 . ? 1_555 ? 36 AC4 20 BCT C . ? BCT A 101 . ? 1_555 ? 37 AC4 20 DC B 1 ? DC B 11 . ? 4_544 ? 38 AC4 20 DC B 2 ? DC B 12 . ? 4_544 ? 39 AC4 20 DG B 4 ? DG B 14 . ? 1_555 ? 40 AC4 20 DC B 7 ? DC B 17 . ? 1_555 ? 41 AC4 20 DG B 10 ? DG B 20 . ? 6_555 ? 42 AC4 20 HOH F . ? HOH B 110 . ? 1_555 ? 43 AC4 20 HOH F . ? HOH B 115 . ? 1_555 ? 44 AC4 20 HOH F . ? HOH B 119 . ? 1_555 ? 45 AC4 20 HOH F . ? HOH B 121 . ? 6_555 ? 46 AC4 20 HOH F . ? HOH B 123 . ? 1_555 ? 47 AC4 20 HOH F . ? HOH B 126 . ? 1_555 ? 48 AC4 20 HOH F . ? HOH B 128 . ? 1_555 ? 49 AC4 20 HOH F . ? HOH B 131 . ? 1_555 ? 50 AC4 20 HOH F . ? HOH B 133 . ? 1_555 ? 51 AC4 20 HOH F . ? HOH B 149 . ? 6_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? P A 5FC 5 ? ? 1.716 1.607 0.109 0.012 Y 2 1 "O3'" A 5FC 5 ? ? P A DG 6 ? ? 1.714 1.607 0.107 0.012 Y 3 1 "O3'" B DG 14 ? ? P B 5FC 15 ? ? 1.700 1.607 0.093 0.012 Y 4 1 "O3'" B 5FC 15 ? ? P B DG 16 ? ? 1.706 1.607 0.099 0.012 Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5FC P P N N 1 5FC OP2 O N N 2 5FC OP1 O N N 3 5FC "O5'" O N N 4 5FC N1 N N N 5 5FC C6 C N N 6 5FC C2 C N N 7 5FC O2 O N N 8 5FC N3 N N N 9 5FC C4 C N N 10 5FC N4 N N N 11 5FC C5 C N N 12 5FC "C2'" C N N 13 5FC "C5'" C N N 14 5FC "C4'" C N R 15 5FC "O4'" O N N 16 5FC "C1'" C N R 17 5FC "C3'" C N S 18 5FC "O3'" O N N 19 5FC C5A C N N 20 5FC O5A O N N 21 5FC OP3 O N N 22 5FC HOP2 H N N 23 5FC H6 H N N 24 5FC HN41 H N N 25 5FC HN42 H N N 26 5FC "H2'" H N N 27 5FC "H2''" H N N 28 5FC "H5'" H N N 29 5FC "H5''" H N N 30 5FC "H4'" H N N 31 5FC "H1'" H N N 32 5FC "H3'" H N N 33 5FC "HO3'" H N N 34 5FC H5A H N N 35 5FC HOP3 H N N 36 BCT C C N N 37 BCT O1 O N N 38 BCT O2 O N N 39 BCT O3 O N N 40 BCT HO3 H N N 41 DA OP3 O N N 42 DA P P N N 43 DA OP1 O N N 44 DA OP2 O N N 45 DA "O5'" O N N 46 DA "C5'" C N N 47 DA "C4'" C N R 48 DA "O4'" O N N 49 DA "C3'" C N S 50 DA "O3'" O N N 51 DA "C2'" C N N 52 DA "C1'" C N R 53 DA N9 N Y N 54 DA C8 C Y N 55 DA N7 N Y N 56 DA C5 C Y N 57 DA C6 C Y N 58 DA N6 N N N 59 DA N1 N Y N 60 DA C2 C Y N 61 DA N3 N Y N 62 DA C4 C Y N 63 DA HOP3 H N N 64 DA HOP2 H N N 65 DA "H5'" H N N 66 DA "H5''" H N N 67 DA "H4'" H N N 68 DA "H3'" H N N 69 DA "HO3'" H N N 70 DA "H2'" H N N 71 DA "H2''" H N N 72 DA "H1'" H N N 73 DA H8 H N N 74 DA H61 H N N 75 DA H62 H N N 76 DA H2 H N N 77 DC OP3 O N N 78 DC P P N N 79 DC OP1 O N N 80 DC OP2 O N N 81 DC "O5'" O N N 82 DC "C5'" C N N 83 DC "C4'" C N R 84 DC "O4'" O N N 85 DC "C3'" C N S 86 DC "O3'" O N N 87 DC "C2'" C N N 88 DC "C1'" C N R 89 DC N1 N N N 90 DC C2 C N N 91 DC O2 O N N 92 DC N3 N N N 93 DC C4 C N N 94 DC N4 N N N 95 DC C5 C N N 96 DC C6 C N N 97 DC HOP3 H N N 98 DC HOP2 H N N 99 DC "H5'" H N N 100 DC "H5''" H N N 101 DC "H4'" H N N 102 DC "H3'" H N N 103 DC "HO3'" H N N 104 DC "H2'" H N N 105 DC "H2''" H N N 106 DC "H1'" H N N 107 DC H41 H N N 108 DC H42 H N N 109 DC H5 H N N 110 DC H6 H N N 111 DG OP3 O N N 112 DG P P N N 113 DG OP1 O N N 114 DG OP2 O N N 115 DG "O5'" O N N 116 DG "C5'" C N N 117 DG "C4'" C N R 118 DG "O4'" O N N 119 DG "C3'" C N S 120 DG "O3'" O N N 121 DG "C2'" C N N 122 DG "C1'" C N R 123 DG N9 N Y N 124 DG C8 C Y N 125 DG N7 N Y N 126 DG C5 C Y N 127 DG C6 C N N 128 DG O6 O N N 129 DG N1 N N N 130 DG C2 C N N 131 DG N2 N N N 132 DG N3 N N N 133 DG C4 C Y N 134 DG HOP3 H N N 135 DG HOP2 H N N 136 DG "H5'" H N N 137 DG "H5''" H N N 138 DG "H4'" H N N 139 DG "H3'" H N N 140 DG "HO3'" H N N 141 DG "H2'" H N N 142 DG "H2''" H N N 143 DG "H1'" H N N 144 DG H8 H N N 145 DG H1 H N N 146 DG H21 H N N 147 DG H22 H N N 148 DT OP3 O N N 149 DT P P N N 150 DT OP1 O N N 151 DT OP2 O N N 152 DT "O5'" O N N 153 DT "C5'" C N N 154 DT "C4'" C N R 155 DT "O4'" O N N 156 DT "C3'" C N S 157 DT "O3'" O N N 158 DT "C2'" C N N 159 DT "C1'" C N R 160 DT N1 N N N 161 DT C2 C N N 162 DT O2 O N N 163 DT N3 N N N 164 DT C4 C N N 165 DT O4 O N N 166 DT C5 C N N 167 DT C7 C N N 168 DT C6 C N N 169 DT HOP3 H N N 170 DT HOP2 H N N 171 DT "H5'" H N N 172 DT "H5''" H N N 173 DT "H4'" H N N 174 DT "H3'" H N N 175 DT "HO3'" H N N 176 DT "H2'" H N N 177 DT "H2''" H N N 178 DT "H1'" H N N 179 DT H3 H N N 180 DT H71 H N N 181 DT H72 H N N 182 DT H73 H N N 183 DT H6 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5FC P OP2 sing N N 1 5FC P OP1 doub N N 2 5FC P "O5'" sing N N 3 5FC P OP3 sing N N 4 5FC OP2 HOP2 sing N N 5 5FC "O5'" "C5'" sing N N 6 5FC N1 C6 sing N N 7 5FC N1 C2 sing N N 8 5FC N1 "C1'" sing N N 9 5FC C6 C5 doub N N 10 5FC C6 H6 sing N N 11 5FC C2 O2 doub N N 12 5FC C2 N3 sing N N 13 5FC N3 C4 doub N N 14 5FC C4 N4 sing N N 15 5FC C4 C5 sing N N 16 5FC N4 HN41 sing N N 17 5FC N4 HN42 sing N N 18 5FC C5 C5A sing N N 19 5FC "C2'" "C1'" sing N N 20 5FC "C2'" "C3'" sing N N 21 5FC "C2'" "H2'" sing N N 22 5FC "C2'" "H2''" sing N N 23 5FC "C5'" "C4'" sing N N 24 5FC "C5'" "H5'" sing N N 25 5FC "C5'" "H5''" sing N N 26 5FC "C4'" "O4'" sing N N 27 5FC "C4'" "C3'" sing N N 28 5FC "C4'" "H4'" sing N N 29 5FC "O4'" "C1'" sing N N 30 5FC "C1'" "H1'" sing N N 31 5FC "C3'" "O3'" sing N N 32 5FC "C3'" "H3'" sing N N 33 5FC "O3'" "HO3'" sing N N 34 5FC C5A O5A doub N N 35 5FC C5A H5A sing N N 36 5FC OP3 HOP3 sing N N 37 BCT C O1 doub N N 38 BCT C O2 sing N N 39 BCT C O3 sing N N 40 BCT O3 HO3 sing N N 41 DA OP3 P sing N N 42 DA OP3 HOP3 sing N N 43 DA P OP1 doub N N 44 DA P OP2 sing N N 45 DA P "O5'" sing N N 46 DA OP2 HOP2 sing N N 47 DA "O5'" "C5'" sing N N 48 DA "C5'" "C4'" sing N N 49 DA "C5'" "H5'" sing N N 50 DA "C5'" "H5''" sing N N 51 DA "C4'" "O4'" sing N N 52 DA "C4'" "C3'" sing N N 53 DA "C4'" "H4'" sing N N 54 DA "O4'" "C1'" sing N N 55 DA "C3'" "O3'" sing N N 56 DA "C3'" "C2'" sing N N 57 DA "C3'" "H3'" sing N N 58 DA "O3'" "HO3'" sing N N 59 DA "C2'" "C1'" sing N N 60 DA "C2'" "H2'" sing N N 61 DA "C2'" "H2''" sing N N 62 DA "C1'" N9 sing N N 63 DA "C1'" "H1'" sing N N 64 DA N9 C8 sing Y N 65 DA N9 C4 sing Y N 66 DA C8 N7 doub Y N 67 DA C8 H8 sing N N 68 DA N7 C5 sing Y N 69 DA C5 C6 sing Y N 70 DA C5 C4 doub Y N 71 DA C6 N6 sing N N 72 DA C6 N1 doub Y N 73 DA N6 H61 sing N N 74 DA N6 H62 sing N N 75 DA N1 C2 sing Y N 76 DA C2 N3 doub Y N 77 DA C2 H2 sing N N 78 DA N3 C4 sing Y N 79 DC OP3 P sing N N 80 DC OP3 HOP3 sing N N 81 DC P OP1 doub N N 82 DC P OP2 sing N N 83 DC P "O5'" sing N N 84 DC OP2 HOP2 sing N N 85 DC "O5'" "C5'" sing N N 86 DC "C5'" "C4'" sing N N 87 DC "C5'" "H5'" sing N N 88 DC "C5'" "H5''" sing N N 89 DC "C4'" "O4'" sing N N 90 DC "C4'" "C3'" sing N N 91 DC "C4'" "H4'" sing N N 92 DC "O4'" "C1'" sing N N 93 DC "C3'" "O3'" sing N N 94 DC "C3'" "C2'" sing N N 95 DC "C3'" "H3'" sing N N 96 DC "O3'" "HO3'" sing N N 97 DC "C2'" "C1'" sing N N 98 DC "C2'" "H2'" sing N N 99 DC "C2'" "H2''" sing N N 100 DC "C1'" N1 sing N N 101 DC "C1'" "H1'" sing N N 102 DC N1 C2 sing N N 103 DC N1 C6 sing N N 104 DC C2 O2 doub N N 105 DC C2 N3 sing N N 106 DC N3 C4 doub N N 107 DC C4 N4 sing N N 108 DC C4 C5 sing N N 109 DC N4 H41 sing N N 110 DC N4 H42 sing N N 111 DC C5 C6 doub N N 112 DC C5 H5 sing N N 113 DC C6 H6 sing N N 114 DG OP3 P sing N N 115 DG OP3 HOP3 sing N N 116 DG P OP1 doub N N 117 DG P OP2 sing N N 118 DG P "O5'" sing N N 119 DG OP2 HOP2 sing N N 120 DG "O5'" "C5'" sing N N 121 DG "C5'" "C4'" sing N N 122 DG "C5'" "H5'" sing N N 123 DG "C5'" "H5''" sing N N 124 DG "C4'" "O4'" sing N N 125 DG "C4'" "C3'" sing N N 126 DG "C4'" "H4'" sing N N 127 DG "O4'" "C1'" sing N N 128 DG "C3'" "O3'" sing N N 129 DG "C3'" "C2'" sing N N 130 DG "C3'" "H3'" sing N N 131 DG "O3'" "HO3'" sing N N 132 DG "C2'" "C1'" sing N N 133 DG "C2'" "H2'" sing N N 134 DG "C2'" "H2''" sing N N 135 DG "C1'" N9 sing N N 136 DG "C1'" "H1'" sing N N 137 DG N9 C8 sing Y N 138 DG N9 C4 sing Y N 139 DG C8 N7 doub Y N 140 DG C8 H8 sing N N 141 DG N7 C5 sing Y N 142 DG C5 C6 sing N N 143 DG C5 C4 doub Y N 144 DG C6 O6 doub N N 145 DG C6 N1 sing N N 146 DG N1 C2 sing N N 147 DG N1 H1 sing N N 148 DG C2 N2 sing N N 149 DG C2 N3 doub N N 150 DG N2 H21 sing N N 151 DG N2 H22 sing N N 152 DG N3 C4 sing N N 153 DT OP3 P sing N N 154 DT OP3 HOP3 sing N N 155 DT P OP1 doub N N 156 DT P OP2 sing N N 157 DT P "O5'" sing N N 158 DT OP2 HOP2 sing N N 159 DT "O5'" "C5'" sing N N 160 DT "C5'" "C4'" sing N N 161 DT "C5'" "H5'" sing N N 162 DT "C5'" "H5''" sing N N 163 DT "C4'" "O4'" sing N N 164 DT "C4'" "C3'" sing N N 165 DT "C4'" "H4'" sing N N 166 DT "O4'" "C1'" sing N N 167 DT "C3'" "O3'" sing N N 168 DT "C3'" "C2'" sing N N 169 DT "C3'" "H3'" sing N N 170 DT "O3'" "HO3'" sing N N 171 DT "C2'" "C1'" sing N N 172 DT "C2'" "H2'" sing N N 173 DT "C2'" "H2''" sing N N 174 DT "C1'" N1 sing N N 175 DT "C1'" "H1'" sing N N 176 DT N1 C2 sing N N 177 DT N1 C6 sing N N 178 DT C2 O2 doub N N 179 DT C2 N3 sing N N 180 DT N3 C4 sing N N 181 DT N3 H3 sing N N 182 DT C4 O4 doub N N 183 DT C4 C5 sing N N 184 DT C5 C7 sing N N 185 DT C5 C6 doub N N 186 DT C7 H71 sing N N 187 DT C7 H72 sing N N 188 DT C7 H73 sing N N 189 DT C6 H6 sing N N 190 HOH O H1 sing N N 191 HOH O H2 sing N N 192 # _ndb_struct_conf_na.entry_id 5ZAS _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 0.138 -0.061 0.121 -6.176 -3.693 -4.457 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.231 -0.073 0.064 -2.517 -8.737 0.153 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.033 -0.080 0.026 -3.936 -12.503 0.085 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DG 4 1_555 B DC 7 1_555 -0.337 -0.123 0.089 -7.139 -11.008 2.229 4 A_DG4:DC17_B A 4 ? B 17 ? 19 1 1 A 5FC 5 1_555 B DG 6 1_555 0.232 -0.140 0.086 -4.407 -12.030 -0.898 5 A_5FC5:DG16_B A 5 ? B 16 ? 19 1 1 A DG 6 1_555 B 5FC 5 1_555 -0.162 -0.138 0.016 -2.224 -8.462 -1.175 6 A_DG6:5FC15_B A 6 ? B 15 ? 19 1 1 A DC 7 1_555 B DG 4 1_555 0.400 -0.167 0.113 2.098 -9.972 1.750 7 A_DC7:DG14_B A 7 ? B 14 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 -0.118 -0.121 -0.063 6.839 -12.910 4.813 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DG 9 1_555 B DC 2 1_555 -0.272 -0.178 -0.026 -0.847 -7.258 0.057 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.072 -0.073 -0.072 4.207 1.353 0.035 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DC 2 1_555 B DG 9 1_555 1.094 -1.010 3.116 4.598 5.977 38.221 -2.203 -1.111 3.037 9.021 -6.939 38.930 1 AA_DC1DC2:DG19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DA 3 1_555 B DT 8 1_555 0.483 -1.530 3.224 0.936 12.458 27.199 -5.271 -0.763 2.329 24.892 -1.871 29.882 2 AA_DC2DA3:DT18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.047 -1.697 3.333 -2.733 4.777 30.678 -4.054 -0.423 3.033 8.938 5.113 31.156 3 AA_DA3DG4:DC17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DG 4 1_555 B DC 7 1_555 A 5FC 5 1_555 B DG 6 1_555 -0.909 -1.304 3.190 -0.841 4.375 35.398 -2.735 1.368 3.032 7.159 1.377 35.668 4 AA_DG45FC5:DG16DC17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A 5FC 5 1_555 B DG 6 1_555 A DG 6 1_555 B 5FC 5 1_555 1.051 -1.875 3.128 3.074 12.255 25.030 -6.335 -1.557 2.108 26.249 -6.583 27.993 5 AA_5FC5DG6:5FC15DG16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DG 6 1_555 B 5FC 5 1_555 A DC 7 1_555 B DG 4 1_555 0.783 -1.892 3.186 1.440 2.268 33.787 -3.596 -1.120 3.086 3.894 -2.472 33.891 6 AA_DG6DC7:DG145FC15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 -0.680 -2.004 3.103 0.153 6.352 26.658 -5.613 1.469 2.561 13.532 -0.327 27.391 7 AA_DC7DT8:DA13DG14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.405 -1.310 3.367 -1.625 11.328 32.655 -3.903 0.439 2.788 19.418 2.785 34.551 8 AA_DT8DG9:DC12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 0.622 -2.016 3.151 0.558 2.181 29.686 -4.354 -1.101 3.010 4.250 -1.088 29.769 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 5ZAS _atom_sites.fract_transf_matrix[1][1] 0.018332 _atom_sites.fract_transf_matrix[1][2] 0.010584 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021169 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021825 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_