HEADER SIGNALING PROTEIN 09-FEB-18 5ZAU TITLE COMPLEX OF THE HUMAN FYN SH3 AND MONOBODY BINDER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE FYN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 85-141; COMPND 5 SYNONYM: PROTO-ONCOGENE SYN,PROTO-ONCOGENE C-FYN,SRC-LIKE KINASE,SLK, COMPND 6 P59-FYN; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MONOBODY BINDER; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FYN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 10 ORGANISM_TAXID: 2287; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.P.REDDY,A.GULYANI,R.DAS REVDAT 4 15-MAY-24 5ZAU 1 REMARK REVDAT 3 14-JUN-23 5ZAU 1 REMARK REVDAT 2 25-MAR-20 5ZAU 1 JRNL REVDAT 1 11-SEP-19 5ZAU 0 JRNL AUTH A.MUKHERJEE,R.SINGH,S.UDAYAN,S.BISWAS,P.P.REDDY,S.MANMADHAN, JRNL AUTH 2 G.GEORGE,S.KUMAR,R.DAS,B.M.RAO,A.GULYANI JRNL TITL A FYN BIOSENSOR REVEALS PULSATILE, SPATIALLY LOCALIZED JRNL TITL 2 KINASE ACTIVITY AND SIGNALING CROSSTALK IN LIVE MAMMALIAN JRNL TITL 3 CELLS. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32017701 JRNL DOI 10.7554/ELIFE.50571 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : HADDOCK REMARK 3 AUTHORS : BONVIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DOCKING WITH NMR RESTRAINTS REMARK 4 REMARK 4 5ZAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006735. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] FYN REMARK 210 SH3 DOMAIN, 90% H2O/10% D2O; 1 REMARK 210 MM [U-99% 13C; U-99% 15N] REMARK 210 MONOBODY BINDER, 90% H2O/10% D2O; REMARK 210 1 MM [U-99% 15N; U-98% 2H] FYN REMARK 210 SH3 DOMAIN, 1.5 MM UNLABELED REMARK 210 MONOBODY BINDER, 90% H2O/10% D2O; REMARK 210 0.2 MM [U-99% 15N] FYN SH3 REMARK 210 DOMAIN, 1 MM UNLABELED MONOBODY REMARK 210 BINDER, 90% H2O/10% D2O; 0.2 MM REMARK 210 [U-99% 15N] MONOBODY BINDER, 1 REMARK 210 MM UNLABELED FYN SH3 DOMAIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D NOESY HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, PINE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 118 HZ1 LYS B 9 1.54 REMARK 500 OE2 GLU A 107 HG1 THR A 126 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR B 8 92.88 -63.77 REMARK 500 1 LYS B 28 -41.69 -135.17 REMARK 500 2 THR A 97 -162.25 -124.36 REMARK 500 2 SER A 115 47.21 -86.82 REMARK 500 2 VAL B 21 -73.12 -83.76 REMARK 500 2 LYS B 40 90.45 -160.49 REMARK 500 3 THR A 97 -165.09 -129.81 REMARK 500 3 LEU A 112 -62.32 -102.70 REMARK 500 3 VAL B 21 -72.86 -81.26 REMARK 500 3 LYS B 28 -38.44 -134.17 REMARK 500 3 LYS B 40 99.28 -163.02 REMARK 500 4 THR A 126 -66.36 -95.06 REMARK 500 4 LYS B 28 -51.97 -138.56 REMARK 500 4 ASP B 50 52.04 -96.88 REMARK 500 4 LYS B 63 65.01 64.77 REMARK 500 5 VAL B 21 -71.62 -77.92 REMARK 500 5 LYS B 28 -50.65 -148.12 REMARK 500 5 LYS B 40 89.90 -159.93 REMARK 500 6 THR A 97 -160.86 -120.75 REMARK 500 6 THR A 127 -61.14 -104.24 REMARK 500 6 LYS B 28 -57.82 -152.64 REMARK 500 6 LYS B 40 114.70 -163.77 REMARK 500 6 GLU B 48 41.29 -77.70 REMARK 500 6 LYS B 49 -62.26 -139.27 REMARK 500 6 LYS B 63 75.88 66.95 REMARK 500 7 THR A 97 -166.52 -129.26 REMARK 500 7 VAL B 21 -74.79 -77.92 REMARK 500 7 LYS B 28 -52.79 -145.24 REMARK 500 7 LYS B 63 97.38 67.58 REMARK 500 8 ASP A 118 -69.00 -122.76 REMARK 500 8 THR A 127 -67.17 -94.58 REMARK 500 8 TYR B 8 96.38 -67.77 REMARK 500 8 LYS B 28 -53.04 -157.52 REMARK 500 8 LYS B 49 -50.54 -137.69 REMARK 500 8 LYS B 63 62.52 64.00 REMARK 500 9 VAL B 21 -78.69 -62.19 REMARK 500 9 LYS B 28 -52.27 -128.02 REMARK 500 9 LYS B 40 85.47 -160.34 REMARK 500 10 LYS B 28 -47.41 -134.12 REMARK 500 10 LYS B 49 -62.79 -122.92 REMARK 500 10 ASP B 50 36.33 -86.35 REMARK 500 10 LYS B 63 79.48 62.31 REMARK 500 11 THR A 97 -160.83 -121.89 REMARK 500 11 THR A 127 -63.70 -104.35 REMARK 500 11 VAL B 21 -75.42 -76.65 REMARK 500 11 ASP B 50 -53.30 -133.26 REMARK 500 12 LYS B 7 77.70 -110.00 REMARK 500 12 TYR B 8 99.92 -69.58 REMARK 500 12 LYS B 28 -53.73 -140.90 REMARK 500 12 LYS B 40 111.07 -170.13 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36164 RELATED DB: BMRB REMARK 900 COMPLEX OF THE HUMAN FYN SH3 AND MONOBODY BINDER DBREF 5ZAU A 85 141 UNP P06241 FYN_HUMAN 85 141 DBREF 5ZAU B 1 64 PDB 5ZAU 5ZAU 1 64 SEQRES 1 A 57 THR LEU PHE VAL ALA LEU TYR ASP TYR GLU ALA ARG THR SEQRES 2 A 57 GLU ASP ASP LEU SER PHE HIS LYS GLY GLU LYS PHE GLN SEQRES 3 A 57 ILE LEU ASN SER SER GLU GLY ASP TRP TRP GLU ALA ARG SEQRES 4 A 57 SER LEU THR THR GLY GLU THR GLY TYR ILE PRO SER ASN SEQRES 5 A 57 TYR VAL ALA PRO VAL SEQRES 1 B 64 MET ALA THR VAL LYS PHE LYS TYR LYS GLY GLU GLU LYS SEQRES 2 B 64 GLN VAL ASP ILE SER LYS ILE VAL PHE VAL THR ARG TYR SEQRES 3 B 64 GLY LYS GLN ILE PHE PHE ARG TYR ASP LEU GLY GLY GLY SEQRES 4 B 64 LYS PRO GLY PHE GLY VAL VAL SER GLU LYS ASP ALA PRO SEQRES 5 B 64 LYS GLU LEU LEU GLN LYS LEU GLU LYS GLN LYS LYS HELIX 1 AA1 PRO B 52 GLU B 60 1 9 SHEET 1 AA1 5 THR A 130 ILE A 133 0 SHEET 2 AA1 5 TRP A 120 SER A 124 -1 N TRP A 120 O ILE A 133 SHEET 3 AA1 5 LYS A 108 ASN A 113 -1 N GLN A 110 O ARG A 123 SHEET 4 AA1 5 LEU A 86 ALA A 89 -1 N PHE A 87 O PHE A 109 SHEET 5 AA1 5 VAL A 138 PRO A 140 -1 O ALA A 139 N VAL A 88 SHEET 1 AA2 2 THR B 3 TYR B 8 0 SHEET 2 AA2 2 GLU B 11 ASP B 16 -1 O LYS B 13 N PHE B 6 SHEET 1 AA3 3 ILE B 20 ARG B 25 0 SHEET 2 AA3 3 GLN B 29 TYR B 34 -1 O PHE B 31 N THR B 24 SHEET 3 AA3 3 GLY B 42 SER B 47 -1 O VAL B 46 N ILE B 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1