HEADER OXIDOREDUCTASE 12-FEB-18 5ZBM TITLE STRUCTURE OF GLYCOLATE OXIDASE CONTAINING FMN FROM NICOTIANA TITLE 2 BENTHAMIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOLATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA BENTHAMIANA; SOURCE 3 ORGANISM_TAXID: 4100; SOURCE 4 GENE: GOX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME KINETICS, SAXS, OLIGOMERIZATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,Y.LIU REVDAT 3 22-NOV-23 5ZBM 1 REMARK REVDAT 2 08-JUL-20 5ZBM 1 JRNL REVDAT 1 26-DEC-18 5ZBM 0 JRNL AUTH Y.LIU,W.WU,Z.CHEN JRNL TITL STRUCTURES OF GLYCOLATE OXIDASE FROM NICOTIANA BENTHAMIANA JRNL TITL 2 REVEAL A CONSERVED PH SENSOR AFFECTING THE BINDING OF FMN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 503 3050 2018 JRNL REFN ESSN 1090-2104 JRNL PMID 30143257 JRNL DOI 10.1016/J.BBRC.2018.08.092 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 3 NUMBER OF REFLECTIONS : 27661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1496 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2015 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -2.23000 REMARK 3 B33 (A**2) : 4.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5548 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5430 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7519 ; 1.267 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12430 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 700 ; 6.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;33.517 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 940 ;15.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;17.414 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 871 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6177 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1242 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2812 ; 1.345 ; 4.347 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2811 ; 1.344 ; 4.347 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3508 ; 2.263 ; 6.514 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3509 ; 2.263 ; 6.514 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2736 ; 1.257 ; 4.434 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2735 ; 1.257 ; 4.435 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4012 ; 2.128 ; 6.603 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6637 ; 4.438 ;35.062 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6620 ; 4.392 ;35.073 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.534 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35%(W/V) MPD, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.11500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.11500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.91150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.11500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.11500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.91150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 72.11500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 72.11500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.91150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 72.11500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 72.11500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.91150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 144.23000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -144.23000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -144.23000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 144.23000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 MET A 192 REMARK 465 ASP A 193 REMARK 465 GLN A 194 REMARK 465 ALA A 195 REMARK 465 SER A 196 REMARK 465 ASP A 197 REMARK 465 SER A 198 REMARK 465 ALA A 361 REMARK 465 PRO A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 ALA A 365 REMARK 465 LEU A 366 REMARK 465 PRO A 367 REMARK 465 ALA A 368 REMARK 465 PRO A 369 REMARK 465 ARG A 370 REMARK 465 LEU A 371 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 MET B 192 REMARK 465 ASP B 193 REMARK 465 GLN B 194 REMARK 465 ALA B 195 REMARK 465 SER B 196 REMARK 465 ALA B 361 REMARK 465 PRO B 362 REMARK 465 ARG B 363 REMARK 465 ALA B 364 REMARK 465 ALA B 365 REMARK 465 LEU B 366 REMARK 465 PRO B 367 REMARK 465 ALA B 368 REMARK 465 PRO B 369 REMARK 465 ARG B 370 REMARK 465 LEU B 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 OE1 REMARK 470 LYS A 58 CD CE NZ REMARK 470 LEU A 187 CD2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ARG A 210 CZ NH1 NH2 REMARK 470 LYS A 215 CD CE NZ REMARK 470 MET A 268 CE REMARK 470 LYS A 325 CD CE NZ REMARK 470 ASN A 348 ND2 REMARK 470 GLU A 349 OE1 REMARK 470 MET B 8 CE REMARK 470 GLU B 9 OE1 REMARK 470 GLU B 11 OE1 REMARK 470 LYS B 58 CD CE NZ REMARK 470 LEU B 187 CD2 REMARK 470 LYS B 191 CG CD CE NZ REMARK 470 ASP B 197 CG OD1 OD2 REMARK 470 SER B 198 OG REMARK 470 MET B 268 CE REMARK 470 LEU B 331 CD2 REMARK 470 ASN B 348 ND2 REMARK 470 GLU B 349 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -140.23 63.13 REMARK 500 ASP A 55 103.37 -57.33 REMARK 500 PRO A 73 44.07 -87.82 REMARK 500 MET A 81 57.89 37.39 REMARK 500 GLN A 259 -98.86 -105.20 REMARK 500 GLU B 31 -129.59 59.25 REMARK 500 ASP B 55 102.13 -57.89 REMARK 500 PRO B 73 34.86 -81.14 REMARK 500 TRP B 109 31.95 -93.55 REMARK 500 GLN B 259 -95.79 -101.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 639 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 640 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A 641 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A 642 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH A 643 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH B 634 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 635 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 636 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 637 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH B 638 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH B 639 DISTANCE = 7.66 ANGSTROMS REMARK 525 HOH B 640 DISTANCE = 8.17 ANGSTROMS REMARK 525 HOH B 641 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH B 642 DISTANCE = 8.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 DBREF 5ZBM A 1 371 UNP E1AXT8 E1AXT8_NICBE 1 371 DBREF 5ZBM B 1 371 UNP E1AXT8 E1AXT8_NICBE 1 371 SEQRES 1 A 371 MET GLU GLU VAL THR ASN VAL MET GLU TYR GLU ALA ILE SEQRES 2 A 371 ALA LYS LYS LYS LEU PRO LYS MET VAL PHE ASP TYR TYR SEQRES 3 A 371 ALA SER GLY ALA GLU ASP GLN TRP THR LEU ALA GLU ASN SEQRES 4 A 371 ARG ASN ALA PHE SER ARG ILE LEU PHE ARG PRO ARG ILE SEQRES 5 A 371 LEU ILE ASP VAL SER LYS ILE ASP MET SER THR THR VAL SEQRES 6 A 371 LEU GLY PHE LYS ILE SER MET PRO ILE MET ILE ALA PRO SEQRES 7 A 371 THR ALA MET GLN LYS MET ALA HIS PRO GLU GLY GLU TYR SEQRES 8 A 371 ALA THR ALA ARG ALA ALA SER ALA ALA GLY THR ILE MET SEQRES 9 A 371 THR LEU SER SER TRP ALA THR SER SER VAL GLU GLU VAL SEQRES 10 A 371 ALA SER THR GLY PRO GLY ILE ARG PHE PHE GLN LEU TYR SEQRES 11 A 371 VAL TYR LYS ASP ARG ASN VAL VAL ALA GLN LEU VAL ARG SEQRES 12 A 371 ARG ALA GLU ARG ALA GLY PHE LYS ALA ILE ALA LEU THR SEQRES 13 A 371 VAL ASP THR PRO ARG LEU GLY ARG ARG GLU ALA ASP ILE SEQRES 14 A 371 LYS ASN ARG PHE VAL LEU PRO PRO PHE LEU THR LEU LYS SEQRES 15 A 371 ASN PHE GLU GLY LEU ASP LEU GLY LYS MET ASP GLN ALA SEQRES 16 A 371 SER ASP SER GLY LEU ALA SER TYR VAL ALA GLY GLN ILE SEQRES 17 A 371 ASP ARG THR LEU SER TRP LYS ASP VAL GLN TRP LEU GLN SEQRES 18 A 371 THR ILE THR SER LEU PRO ILE LEU VAL LYS GLY VAL LEU SEQRES 19 A 371 THR ALA GLU ASP ALA ARG LEU ALA VAL GLN ALA GLY ALA SEQRES 20 A 371 ALA GLY ILE ILE VAL SER ASN HIS GLY ALA ARG GLN LEU SEQRES 21 A 371 ASP TYR VAL PRO SER THR ILE MET ALA LEU GLU GLU VAL SEQRES 22 A 371 VAL LYS ALA ALA GLN GLY ARG ILE PRO VAL PHE LEU ASP SEQRES 23 A 371 GLY GLY VAL ARG ARG GLY THR ASP VAL PHE LYS ALA LEU SEQRES 24 A 371 ALA LEU GLY ALA SER GLY ILE PHE ILE GLY ARG PRO VAL SEQRES 25 A 371 VAL PHE SER LEU ALA ALA GLU GLY GLU ALA GLY ILE LYS SEQRES 26 A 371 LYS VAL LEU GLN MET LEU ARG ASP GLU PHE GLU LEU THR SEQRES 27 A 371 MET ALA LEU SER GLY CYS ARG SER LEU ASN GLU ILE THR SEQRES 28 A 371 ARG ASN HIS ILE VAL THR GLU TRP ASP ALA PRO ARG ALA SEQRES 29 A 371 ALA LEU PRO ALA PRO ARG LEU SEQRES 1 B 371 MET GLU GLU VAL THR ASN VAL MET GLU TYR GLU ALA ILE SEQRES 2 B 371 ALA LYS LYS LYS LEU PRO LYS MET VAL PHE ASP TYR TYR SEQRES 3 B 371 ALA SER GLY ALA GLU ASP GLN TRP THR LEU ALA GLU ASN SEQRES 4 B 371 ARG ASN ALA PHE SER ARG ILE LEU PHE ARG PRO ARG ILE SEQRES 5 B 371 LEU ILE ASP VAL SER LYS ILE ASP MET SER THR THR VAL SEQRES 6 B 371 LEU GLY PHE LYS ILE SER MET PRO ILE MET ILE ALA PRO SEQRES 7 B 371 THR ALA MET GLN LYS MET ALA HIS PRO GLU GLY GLU TYR SEQRES 8 B 371 ALA THR ALA ARG ALA ALA SER ALA ALA GLY THR ILE MET SEQRES 9 B 371 THR LEU SER SER TRP ALA THR SER SER VAL GLU GLU VAL SEQRES 10 B 371 ALA SER THR GLY PRO GLY ILE ARG PHE PHE GLN LEU TYR SEQRES 11 B 371 VAL TYR LYS ASP ARG ASN VAL VAL ALA GLN LEU VAL ARG SEQRES 12 B 371 ARG ALA GLU ARG ALA GLY PHE LYS ALA ILE ALA LEU THR SEQRES 13 B 371 VAL ASP THR PRO ARG LEU GLY ARG ARG GLU ALA ASP ILE SEQRES 14 B 371 LYS ASN ARG PHE VAL LEU PRO PRO PHE LEU THR LEU LYS SEQRES 15 B 371 ASN PHE GLU GLY LEU ASP LEU GLY LYS MET ASP GLN ALA SEQRES 16 B 371 SER ASP SER GLY LEU ALA SER TYR VAL ALA GLY GLN ILE SEQRES 17 B 371 ASP ARG THR LEU SER TRP LYS ASP VAL GLN TRP LEU GLN SEQRES 18 B 371 THR ILE THR SER LEU PRO ILE LEU VAL LYS GLY VAL LEU SEQRES 19 B 371 THR ALA GLU ASP ALA ARG LEU ALA VAL GLN ALA GLY ALA SEQRES 20 B 371 ALA GLY ILE ILE VAL SER ASN HIS GLY ALA ARG GLN LEU SEQRES 21 B 371 ASP TYR VAL PRO SER THR ILE MET ALA LEU GLU GLU VAL SEQRES 22 B 371 VAL LYS ALA ALA GLN GLY ARG ILE PRO VAL PHE LEU ASP SEQRES 23 B 371 GLY GLY VAL ARG ARG GLY THR ASP VAL PHE LYS ALA LEU SEQRES 24 B 371 ALA LEU GLY ALA SER GLY ILE PHE ILE GLY ARG PRO VAL SEQRES 25 B 371 VAL PHE SER LEU ALA ALA GLU GLY GLU ALA GLY ILE LYS SEQRES 26 B 371 LYS VAL LEU GLN MET LEU ARG ASP GLU PHE GLU LEU THR SEQRES 27 B 371 MET ALA LEU SER GLY CYS ARG SER LEU ASN GLU ILE THR SEQRES 28 B 371 ARG ASN HIS ILE VAL THR GLU TRP ASP ALA PRO ARG ALA SEQRES 29 B 371 ALA LEU PRO ALA PRO ARG LEU HET FMN A 401 31 HET FMN B 401 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *285(H2 O) HELIX 1 AA1 MET A 8 LEU A 18 1 11 HELIX 2 AA2 PRO A 19 SER A 28 1 10 HELIX 3 AA3 GLN A 33 ARG A 45 1 13 HELIX 4 AA4 MET A 81 ALA A 85 5 5 HELIX 5 AA5 GLY A 89 ALA A 100 1 12 HELIX 6 AA6 SER A 113 SER A 119 1 7 HELIX 7 AA7 ASP A 134 ALA A 148 1 15 HELIX 8 AA8 ARG A 165 ARG A 172 1 8 HELIX 9 AA9 LEU A 200 ILE A 208 1 9 HELIX 10 AB1 SER A 213 THR A 224 1 12 HELIX 11 AB2 THR A 235 ALA A 245 1 11 HELIX 12 AB3 ASN A 254 ARG A 258 5 5 HELIX 13 AB4 SER A 265 GLN A 278 1 14 HELIX 14 AB5 ARG A 291 LEU A 301 1 11 HELIX 15 AB6 GLY A 309 GLY A 320 1 12 HELIX 16 AB7 GLY A 320 GLY A 343 1 24 HELIX 17 AB8 THR A 351 ASN A 353 5 3 HELIX 18 AB9 MET B 8 LEU B 18 1 11 HELIX 19 AC1 PRO B 19 SER B 28 1 10 HELIX 20 AC2 GLN B 33 ALA B 42 1 10 HELIX 21 AC3 MET B 81 ALA B 85 5 5 HELIX 22 AC4 GLY B 89 GLY B 101 1 13 HELIX 23 AC5 SER B 113 SER B 119 1 7 HELIX 24 AC6 ASP B 134 ALA B 148 1 15 HELIX 25 AC7 ARG B 165 ARG B 172 1 8 HELIX 26 AC8 LEU B 181 GLU B 185 5 5 HELIX 27 AC9 GLY B 199 GLY B 206 1 8 HELIX 28 AD1 SER B 213 THR B 224 1 12 HELIX 29 AD2 THR B 235 GLY B 246 1 12 HELIX 30 AD3 SER B 265 ALA B 277 1 13 HELIX 31 AD4 ARG B 291 LEU B 301 1 11 HELIX 32 AD5 GLY B 309 GLY B 320 1 12 HELIX 33 AD6 GLY B 320 GLY B 343 1 24 HELIX 34 AD7 THR B 351 ASN B 353 5 3 SHEET 1 AA1 2 ILE A 46 PHE A 48 0 SHEET 2 AA1 2 ILE A 355 THR A 357 -1 O VAL A 356 N LEU A 47 SHEET 1 AA2 2 THR A 63 VAL A 65 0 SHEET 2 AA2 2 PHE A 68 ILE A 70 -1 O ILE A 70 N THR A 63 SHEET 1 AA3 2 ILE A 74 ILE A 76 0 SHEET 2 AA3 2 ILE A 306 ILE A 308 1 O ILE A 306 N MET A 75 SHEET 1 AA4 6 MET A 104 SER A 107 0 SHEET 2 AA4 6 ARG A 125 LEU A 129 1 O GLN A 128 N LEU A 106 SHEET 3 AA4 6 ALA A 152 THR A 156 1 O THR A 156 N LEU A 129 SHEET 4 AA4 6 ILE A 228 LYS A 231 1 O LYS A 231 N LEU A 155 SHEET 5 AA4 6 GLY A 249 VAL A 252 1 O ILE A 251 N VAL A 230 SHEET 6 AA4 6 VAL A 283 LEU A 285 1 O PHE A 284 N VAL A 252 SHEET 1 AA5 2 ILE B 46 PHE B 48 0 SHEET 2 AA5 2 ILE B 355 THR B 357 -1 O VAL B 356 N LEU B 47 SHEET 1 AA6 2 THR B 63 VAL B 65 0 SHEET 2 AA6 2 PHE B 68 ILE B 70 -1 O ILE B 70 N THR B 63 SHEET 1 AA7 9 ILE B 74 ILE B 76 0 SHEET 2 AA7 9 MET B 104 LEU B 106 1 O THR B 105 N ILE B 76 SHEET 3 AA7 9 ARG B 125 LEU B 129 1 O GLN B 128 N LEU B 106 SHEET 4 AA7 9 ALA B 152 THR B 156 1 O THR B 156 N LEU B 129 SHEET 5 AA7 9 ILE B 228 LYS B 231 1 O LEU B 229 N ILE B 153 SHEET 6 AA7 9 GLY B 249 VAL B 252 1 O ILE B 251 N VAL B 230 SHEET 7 AA7 9 VAL B 283 LEU B 285 1 O PHE B 284 N VAL B 252 SHEET 8 AA7 9 GLY B 305 ILE B 308 1 O PHE B 307 N LEU B 285 SHEET 9 AA7 9 ILE B 74 ILE B 76 1 N MET B 75 O ILE B 306 SITE 1 AC1 19 TYR A 25 TYR A 26 PRO A 78 ALA A 80 SITE 2 AC1 19 TRP A 109 GLN A 128 TYR A 130 THR A 156 SITE 3 AC1 19 LYS A 231 SER A 253 HIS A 255 ARG A 258 SITE 4 AC1 19 ASP A 286 GLY A 287 GLY A 288 ARG A 290 SITE 5 AC1 19 ILE A 308 GLY A 309 ARG A 310 SITE 1 AC2 19 TYR B 25 TYR B 26 PRO B 78 ALA B 80 SITE 2 AC2 19 TRP B 109 GLN B 128 TYR B 130 THR B 156 SITE 3 AC2 19 LYS B 231 SER B 253 HIS B 255 GLY B 256 SITE 4 AC2 19 ARG B 258 ASP B 286 GLY B 287 GLY B 288 SITE 5 AC2 19 ARG B 290 GLY B 309 ARG B 310 CRYST1 144.230 144.230 129.823 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007703 0.00000