HEADER HYDROLASE 23-FEB-18 5ZDA TITLE CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) FROM TITLE 2 DEINOCOCCUS RADIODURANS IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY ADP-RIBOSE GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: DR_B0099; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ADP-RIBOSE, POLY(ADP-RIBOSE) GLYCOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHO,C.H.HSU REVDAT 3 22-NOV-23 5ZDA 1 REMARK REVDAT 2 11-MAR-20 5ZDA 1 JRNL REVDAT 1 27-FEB-19 5ZDA 0 JRNL AUTH C.C.CHO,C.Y.CHIEN,Y.C.CHIU,M.H.LIN,C.H.HSU JRNL TITL STRUCTURAL AND BIOCHEMICAL EVIDENCE SUPPORTING POLY JRNL TITL 2 ADP-RIBOSYLATION IN THE BACTERIUM DEINOCOCCUS RADIODURANS. JRNL REF NAT COMMUN V. 10 1491 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30940816 JRNL DOI 10.1038/S41467-019-09153-6 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 33710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.2125 - 3.7281 0.99 2458 156 0.1595 0.1576 REMARK 3 2 3.7281 - 2.9604 0.96 2283 142 0.1593 0.1823 REMARK 3 3 2.9604 - 2.5865 1.00 2346 147 0.1818 0.2021 REMARK 3 4 2.5865 - 2.3502 1.00 2330 143 0.1706 0.2037 REMARK 3 5 2.3502 - 2.1819 0.81 1862 121 0.1664 0.1994 REMARK 3 6 2.1819 - 2.0533 1.00 2313 140 0.1707 0.1871 REMARK 3 7 2.0533 - 1.9505 1.00 2303 148 0.1698 0.1990 REMARK 3 8 1.9505 - 1.8656 0.93 2158 131 0.1804 0.1929 REMARK 3 9 1.8656 - 1.7938 1.00 2291 146 0.1661 0.2206 REMARK 3 10 1.7938 - 1.7319 1.00 2282 146 0.1767 0.2117 REMARK 3 11 1.7319 - 1.6778 1.00 2286 143 0.1861 0.2044 REMARK 3 12 1.6778 - 1.6298 1.00 2305 145 0.1892 0.2258 REMARK 3 13 1.6298 - 1.5869 1.00 2281 142 0.1889 0.2097 REMARK 3 14 1.5869 - 1.5482 0.98 2223 139 0.1986 0.2565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1961 REMARK 3 ANGLE : 0.813 2674 REMARK 3 CHIRALITY : 0.051 293 REMARK 3 PLANARITY : 0.007 362 REMARK 3 DIHEDRAL : 5.185 1635 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3545 24.3417 14.7055 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.2090 REMARK 3 T33: 0.2255 T12: -0.0173 REMARK 3 T13: -0.0201 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.5833 L22: 3.1600 REMARK 3 L33: 0.7419 L12: -0.0991 REMARK 3 L13: -0.1536 L23: 0.4942 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0326 S13: -0.0645 REMARK 3 S21: -0.1445 S22: 0.0980 S23: 0.5966 REMARK 3 S31: 0.0542 S32: -0.1539 S33: -0.0874 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0758 20.3386 3.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.1492 REMARK 3 T33: 0.1056 T12: 0.0154 REMARK 3 T13: -0.0122 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.8846 L22: 2.1590 REMARK 3 L33: 0.7871 L12: 0.4196 REMARK 3 L13: -0.2332 L23: 0.4209 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0537 S13: -0.0258 REMARK 3 S21: -0.3868 S22: -0.0428 S23: -0.0387 REMARK 3 S31: 0.0279 S32: -0.1435 S33: 0.0063 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9058 32.0736 19.3394 REMARK 3 T TENSOR REMARK 3 T11: 0.2987 T22: 0.2688 REMARK 3 T33: 0.2457 T12: -0.0027 REMARK 3 T13: -0.0571 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.0031 L22: 2.3642 REMARK 3 L33: 3.3765 L12: 0.4805 REMARK 3 L13: -0.2829 L23: -1.9382 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.3673 S13: -0.0618 REMARK 3 S21: 0.8447 S22: -0.0920 S23: -0.5476 REMARK 3 S31: -0.4313 S32: 0.6940 S33: 0.0609 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4312 30.5957 25.0571 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.2046 REMARK 3 T33: 0.1388 T12: -0.0031 REMARK 3 T13: 0.0238 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.6937 L22: 4.1171 REMARK 3 L33: 1.1272 L12: -0.1097 REMARK 3 L13: -0.8337 L23: -0.7740 REMARK 3 S TENSOR REMARK 3 S11: 0.0158 S12: -0.4055 S13: 0.0088 REMARK 3 S21: 0.6088 S22: 0.0011 S23: 0.2492 REMARK 3 S31: -0.1592 S32: 0.0327 S33: -0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6929 27.4080 17.2592 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1078 REMARK 3 T33: 0.0969 T12: 0.0075 REMARK 3 T13: -0.0022 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 1.3882 L22: 2.2605 REMARK 3 L33: 1.1160 L12: -0.0791 REMARK 3 L13: 0.0071 L23: -0.3469 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0713 S13: 0.0489 REMARK 3 S21: 0.0628 S22: 0.0902 S23: -0.0127 REMARK 3 S31: 0.0007 S32: -0.0388 S33: -0.0650 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0984 14.4495 15.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.1219 REMARK 3 T33: 0.1180 T12: -0.0102 REMARK 3 T13: -0.0035 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.8343 L22: 1.9045 REMARK 3 L33: 1.3099 L12: -0.4005 REMARK 3 L13: -0.1029 L23: -0.2700 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0350 S13: -0.0454 REMARK 3 S21: 0.0086 S22: -0.0285 S23: -0.0479 REMARK 3 S31: 0.0109 S32: 0.0511 S33: 0.0399 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8274 10.4005 7.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1525 REMARK 3 T33: 0.1453 T12: 0.0220 REMARK 3 T13: 0.0410 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.1955 L22: 5.2570 REMARK 3 L33: 2.8065 L12: 1.1243 REMARK 3 L13: -0.0590 L23: 0.1713 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.2090 S13: -0.3236 REMARK 3 S21: -0.3128 S22: -0.0216 S23: -0.2390 REMARK 3 S31: 0.2086 S32: 0.2117 S33: 0.0219 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300005625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.548 REMARK 200 RESOLUTION RANGE LOW (A) : 26.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.391 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3SIH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LI2SO4, 0.1 M BIS-TRIS PH 6.5, REMARK 280 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.54800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.12850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.53650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.12850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.54800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.53650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 PHE A 103 REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 465 GLN A 108 REMARK 465 ALA A 109 REMARK 465 GLN A 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 520 O HOH A 619 1.83 REMARK 500 NH1 ARG A 42 O HOH A 401 1.84 REMARK 500 O HOH A 415 O HOH A 643 1.85 REMARK 500 O HOH A 555 O HOH A 643 1.93 REMARK 500 O HOH A 494 O HOH A 532 1.95 REMARK 500 NH2 ARG A 116 O HOH A 402 2.00 REMARK 500 ND2 ASN A 98 O HOH A 403 2.01 REMARK 500 O HOH A 603 O HOH A 650 2.03 REMARK 500 O HOH A 540 O HOH A 655 2.04 REMARK 500 OD2 ASP A 113 O HOH A 404 2.06 REMARK 500 OD2 ASP A 51 O HOH A 405 2.07 REMARK 500 OG SER A 277 O HOH A 406 2.10 REMARK 500 O HOH A 501 O HOH A 601 2.14 REMARK 500 O HOH A 609 O HOH A 672 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 649 3555 1.95 REMARK 500 O HOH A 429 O HOH A 634 3555 2.09 REMARK 500 O HOH A 422 O HOH A 659 4555 2.16 REMARK 500 O HOH A 422 O HOH A 536 4555 2.18 REMARK 500 O HOH A 531 O HOH A 625 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 113 -168.03 -106.28 REMARK 500 TYR A 144 -164.27 59.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 DBREF 5ZDA A 27 281 UNP Q9RZM4 Q9RZM4_DEIRA 27 281 SEQRES 1 A 255 GLY PRO VAL ARG LEU PRO GLY LEU ALA ALA MET ARG GLN SEQRES 2 A 255 GLY THR ARG LEU PHE THR PRO GLU GLN GLY GLU ASP LEU SEQRES 3 A 255 ARG GLU ALA LEU ARG ARG ARG ARG GLY SER PHE GLN THR SEQRES 4 A 255 THR CYS GLU VAL THR SER GLU THR THR PHE ALA ALA ALA SEQRES 5 A 255 ARG ARG LEU ARG GLU LYS ALA SER ALA LEU ALA ALA LEU SEQRES 6 A 255 ASN PHE ALA SER ALA LYS ASN PRO GLY GLY GLY PHE LEU SEQRES 7 A 255 GLY GLY ALA GLN ALA GLN GLU GLU ASP LEU CYS ARG GLY SEQRES 8 A 255 SER GLY LEU TYR PHE SER LEU THR SER PRO GLN ALA GLU SEQRES 9 A 255 PRO TYR TYR ALA VAL ASN ARG GLN SER HIS SER ALA LEU SEQRES 10 A 255 TYR THR ASP HIS LEU ILE TYR SER PRO GLN VAL PRO ILE SEQRES 11 A 255 PHE ARG ASP ASP ALA GLY GLN LEU LEU PRO ALA PRO VAL SEQRES 12 A 255 PRO VAL ASN ILE ILE THR ALA PRO ALA PRO ASN ALA GLY SEQRES 13 A 255 ALA VAL ALA GLN SER ARG PRO GLU GLN LEU PRO GLN VAL SEQRES 14 A 255 LEU PRO THR LEU ARG GLU ARG ALA ARG ARG VAL LEU GLY SEQRES 15 A 255 VAL ALA ALA TRP MET GLU GLN THR HIS LEU VAL LEU GLY SEQRES 16 A 255 ALA TRP GLY CYS GLY VAL PHE ARG ASN ASP PRO ALA GLY SEQRES 17 A 255 VAL ALA ARG THR PHE ARG GLU LEU LEU GLU GLY GLU ALA SEQRES 18 A 255 GLN GLY ALA PHE GLU HIS VAL THR PHE ALA VAL LEU ASP SEQRES 19 A 255 ASN HIS PRO GLN HIS PRO THR LEU GLY ALA PHE ARG ARG SEQRES 20 A 255 GLU LEU GLU SER LEU CYS LEU PRO HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *285(H2 O) HELIX 1 AA1 GLY A 33 GLY A 40 1 8 HELIX 2 AA2 THR A 45 GLU A 47 5 3 HELIX 3 AA3 GLN A 48 ARG A 60 1 13 HELIX 4 AA4 THR A 73 ARG A 82 1 10 HELIX 5 AA5 GLY A 119 THR A 125 1 7 HELIX 6 AA6 SER A 126 GLN A 128 5 3 HELIX 7 AA7 ALA A 129 HIS A 140 1 12 HELIX 8 AA8 ASN A 180 ARG A 188 1 9 HELIX 9 AA9 PRO A 189 PRO A 193 5 5 HELIX 10 AB1 GLN A 194 MET A 213 1 20 HELIX 11 AB2 ASP A 231 GLU A 244 1 14 HELIX 12 AB3 HIS A 265 LEU A 280 1 16 SHEET 1 AA1 7 ARG A 42 PHE A 44 0 SHEET 2 AA1 7 LEU A 148 ARG A 158 -1 O LEU A 148 N PHE A 44 SHEET 3 AA1 7 LEU A 164 ALA A 176 -1 O ILE A 173 N SER A 151 SHEET 4 AA1 7 LEU A 88 PHE A 93 1 N ASN A 92 O ILE A 174 SHEET 5 AA1 7 HIS A 217 LEU A 220 1 O VAL A 219 N LEU A 91 SHEET 6 AA1 7 HIS A 253 ALA A 257 1 O THR A 255 N LEU A 218 SHEET 7 AA1 7 THR A 66 THR A 70 1 N GLU A 68 O PHE A 256 SITE 1 AC1 10 ARG A 116 GLY A 117 ARG A 158 ARG A 200 SITE 2 AC1 10 ARG A 204 HOH A 433 HOH A 437 HOH A 475 SITE 3 AC1 10 HOH A 501 HOH A 601 CRYST1 45.096 71.073 72.257 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013839 0.00000