HEADER HYDROLASE 23-FEB-18 5ZDD TITLE CRYSTAL STRUCTURE OF POLY(ADP-RIBOSE) GLYCOHYDROLASE (PARG) FROM TITLE 2 DEINOCOCCUS RADIODURANS IN COMPLEX WITH ADP-RIBOSE (P212121) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY ADP-RIBOSE GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS (STRAIN ATCC 13939 / SOURCE 3 DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / SOURCE 4 VKM B-1422); SOURCE 5 ORGANISM_TAXID: 243230; SOURCE 6 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 7 NCIMB 9279 / R1 / VKM B-1422; SOURCE 8 GENE: DR_B0099; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ADP-RIBOSE, POLY(ADP-RIBOSE) GLYCOHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHO,C.H.HSU REVDAT 3 27-MAR-24 5ZDD 1 REMARK REVDAT 2 11-MAR-20 5ZDD 1 JRNL HETSYN REVDAT 1 27-FEB-19 5ZDD 0 JRNL AUTH C.C.CHO,C.Y.CHIEN,Y.C.CHIU,M.H.LIN,C.H.HSU JRNL TITL STRUCTURAL AND BIOCHEMICAL EVIDENCE SUPPORTING POLY JRNL TITL 2 ADP-RIBOSYLATION IN THE BACTERIUM DEINOCOCCUS RADIODURANS. JRNL REF NAT COMMUN V. 10 1491 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30940816 JRNL DOI 10.1038/S41467-019-09153-6 REMARK 2 REMARK 2 RESOLUTION. 2.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 74.3 REMARK 3 NUMBER OF REFLECTIONS : 6555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9773 - 5.2038 1.00 1569 172 0.1519 0.2311 REMARK 3 2 5.2038 - 4.1347 0.98 1544 176 0.1299 0.2270 REMARK 3 3 4.1347 - 3.6133 0.90 1427 160 0.1428 0.2266 REMARK 3 4 3.6133 - 3.2835 0.74 1152 127 0.1699 0.2556 REMARK 3 5 3.2835 - 3.0485 0.60 944 105 0.2139 0.3417 REMARK 3 6 3.0485 - 2.8689 0.54 847 94 0.2755 0.3171 REMARK 3 7 2.8689 - 2.7254 0.45 698 77 0.2473 0.3806 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2002 REMARK 3 ANGLE : 1.079 2728 REMARK 3 CHIRALITY : 0.053 299 REMARK 3 PLANARITY : 0.007 361 REMARK 3 DIHEDRAL : 7.729 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2869 -18.8886 -16.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.3549 T22: 0.3385 REMARK 3 T33: 0.4078 T12: -0.0757 REMARK 3 T13: -0.0343 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.3713 L22: 5.6081 REMARK 3 L33: 7.7478 L12: -2.4152 REMARK 3 L13: 2.8110 L23: -5.5538 REMARK 3 S TENSOR REMARK 3 S11: 0.5604 S12: -1.2069 S13: -0.6698 REMARK 3 S21: -1.3431 S22: 0.3225 S23: 1.1326 REMARK 3 S31: 1.3124 S32: -1.3255 S33: -0.7418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2988 0.5580 -22.6032 REMARK 3 T TENSOR REMARK 3 T11: 0.3239 T22: 0.6929 REMARK 3 T33: 0.5189 T12: 0.1335 REMARK 3 T13: -0.0120 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 1.0632 L22: 4.4853 REMARK 3 L33: 4.7103 L12: -0.0247 REMARK 3 L13: -0.3004 L23: 2.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.1338 S12: 1.2368 S13: -0.5907 REMARK 3 S21: 0.3574 S22: -0.3638 S23: 0.8868 REMARK 3 S31: 1.0191 S32: -0.9790 S33: 0.0153 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0899 5.4867 -5.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.3580 T22: 0.3266 REMARK 3 T33: 0.2607 T12: 0.0197 REMARK 3 T13: -0.0170 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 8.5817 L22: 2.9176 REMARK 3 L33: 1.6742 L12: -0.8602 REMARK 3 L13: 0.3715 L23: -0.2408 REMARK 3 S TENSOR REMARK 3 S11: -0.6365 S12: -0.2160 S13: 0.4229 REMARK 3 S21: 0.6860 S22: 0.4040 S23: 0.0361 REMARK 3 S31: -0.3530 S32: -0.2605 S33: 0.0913 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7210 -6.7305 -10.9564 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.1743 REMARK 3 T33: 0.3047 T12: -0.0153 REMARK 3 T13: -0.0563 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.1737 L22: 2.6590 REMARK 3 L33: 3.8477 L12: 0.4717 REMARK 3 L13: 2.5098 L23: -1.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.1388 S12: 0.0346 S13: 0.0188 REMARK 3 S21: 0.2099 S22: -0.1670 S23: -0.3403 REMARK 3 S31: 0.1226 S32: 0.4157 S33: -0.0342 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4285 -13.5849 -21.1186 REMARK 3 T TENSOR REMARK 3 T11: 0.3326 T22: 0.2194 REMARK 3 T33: 0.3354 T12: 0.0749 REMARK 3 T13: 0.0260 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.9261 L22: 4.1011 REMARK 3 L33: 3.2784 L12: 0.1697 REMARK 3 L13: -0.5070 L23: -0.7814 REMARK 3 S TENSOR REMARK 3 S11: -0.3513 S12: 0.7380 S13: -0.4129 REMARK 3 S21: -0.2336 S22: 0.5499 S23: -0.7464 REMARK 3 S31: 0.4055 S32: 1.0245 S33: 0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6687 -10.5703 -15.8415 REMARK 3 T TENSOR REMARK 3 T11: 0.1954 T22: 0.2192 REMARK 3 T33: 0.2525 T12: 0.0444 REMARK 3 T13: 0.0568 T23: -0.0887 REMARK 3 L TENSOR REMARK 3 L11: 2.6172 L22: 2.7028 REMARK 3 L33: 2.3343 L12: -0.5033 REMARK 3 L13: 0.9949 L23: -2.0520 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: 0.0394 S13: -0.1525 REMARK 3 S21: -0.1767 S22: -0.0298 S23: 0.0253 REMARK 3 S31: 0.2596 S32: 0.1847 S33: -0.0103 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1298 1.3273 -22.0597 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.2703 REMARK 3 T33: 0.2330 T12: 0.0005 REMARK 3 T13: -0.0029 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.2083 L22: 2.1396 REMARK 3 L33: 2.7757 L12: 0.5538 REMARK 3 L13: -1.3594 L23: -2.0702 REMARK 3 S TENSOR REMARK 3 S11: -0.0394 S12: 0.2861 S13: 0.2028 REMARK 3 S21: 0.0178 S22: -0.0024 S23: -0.0215 REMARK 3 S31: -0.1087 S32: -0.1879 S33: 0.0057 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1947 9.3459 -10.8509 REMARK 3 T TENSOR REMARK 3 T11: 0.3738 T22: 0.2760 REMARK 3 T33: 0.4040 T12: -0.0028 REMARK 3 T13: 0.0090 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.5908 L22: 2.2690 REMARK 3 L33: 2.8111 L12: 0.5396 REMARK 3 L13: -0.6735 L23: -0.3076 REMARK 3 S TENSOR REMARK 3 S11: 0.0590 S12: -0.2539 S13: 0.5972 REMARK 3 S21: 0.1749 S22: 0.0618 S23: 0.0005 REMARK 3 S31: -0.5531 S32: 0.1626 S33: -0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZDD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300005628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.725 REMARK 200 RESOLUTION RANGE LOW (A) : 27.976 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6230 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.868 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE PH 6.0, 10% 2-PROPANOL, 10% POLYETHYLENE GLYCOL 4000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.35650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.72550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.47200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.72550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.35650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.47200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ALA A 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 65 O PHE A 251 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 144 -177.90 64.47 REMARK 500 ASP A 146 42.94 -100.25 REMARK 500 SER A 187 -47.36 -130.66 REMARK 500 ALA A 222 48.32 -81.90 REMARK 500 TRP A 223 124.13 -36.03 REMARK 500 CYS A 279 34.94 -90.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 DBREF 5ZDD A 29 280 UNP Q9RZM4 Q9RZM4_DEIRA 29 280 SEQRES 1 A 252 VAL ARG LEU PRO GLY LEU ALA ALA MET ARG GLN GLY THR SEQRES 2 A 252 ARG LEU PHE THR PRO GLU GLN GLY GLU ASP LEU ARG GLU SEQRES 3 A 252 ALA LEU ARG ARG ARG ARG GLY SER PHE GLN THR THR CYS SEQRES 4 A 252 GLU VAL THR SER GLU THR THR PHE ALA ALA ALA ARG ARG SEQRES 5 A 252 LEU ARG GLU LYS ALA SER ALA LEU ALA ALA LEU ASN PHE SEQRES 6 A 252 ALA SER ALA LYS ASN PRO GLY GLY GLY PHE LEU GLY GLY SEQRES 7 A 252 ALA GLN ALA GLN GLU GLU ASP LEU CYS ARG GLY SER GLY SEQRES 8 A 252 LEU TYR PHE SER LEU THR SER PRO GLN ALA GLU PRO TYR SEQRES 9 A 252 TYR ALA VAL ASN ARG GLN SER HIS SER ALA LEU TYR THR SEQRES 10 A 252 ASP HIS LEU ILE TYR SER PRO GLN VAL PRO ILE PHE ARG SEQRES 11 A 252 ASP ASP ALA GLY GLN LEU LEU PRO ALA PRO VAL PRO VAL SEQRES 12 A 252 ASN ILE ILE THR ALA PRO ALA PRO ASN ALA GLY ALA VAL SEQRES 13 A 252 ALA GLN SER ARG PRO GLU GLN LEU PRO GLN VAL LEU PRO SEQRES 14 A 252 THR LEU ARG GLU ARG ALA ARG ARG VAL LEU GLY VAL ALA SEQRES 15 A 252 ALA TRP MET GLU GLN THR HIS LEU VAL LEU GLY ALA TRP SEQRES 16 A 252 GLY CYS GLY VAL PHE ARG ASN ASP PRO ALA GLY VAL ALA SEQRES 17 A 252 ARG THR PHE ARG GLU LEU LEU GLU GLY GLU ALA GLN GLY SEQRES 18 A 252 ALA PHE GLU HIS VAL THR PHE ALA VAL LEU ASP ASN HIS SEQRES 19 A 252 PRO GLN HIS PRO THR LEU GLY ALA PHE ARG ARG GLU LEU SEQRES 20 A 252 GLU SER LEU CYS LEU HET AR6 A 301 36 HET PO4 A 302 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 C15 H23 N5 O14 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *3(H2 O) HELIX 1 AA1 GLY A 33 THR A 41 1 9 HELIX 2 AA2 THR A 45 GLU A 47 5 3 HELIX 3 AA3 GLN A 48 ARG A 60 1 13 HELIX 4 AA4 THR A 73 GLU A 83 1 11 HELIX 5 AA5 ALA A 109 GLY A 117 1 9 HELIX 6 AA6 GLY A 119 THR A 125 1 7 HELIX 7 AA7 SER A 126 GLN A 128 5 3 HELIX 8 AA8 ALA A 129 SER A 139 1 11 HELIX 9 AA9 ASN A 180 ARG A 188 1 9 HELIX 10 AB1 PRO A 189 PRO A 193 5 5 HELIX 11 AB2 GLN A 194 MET A 213 1 20 HELIX 12 AB3 ASP A 231 GLU A 244 1 14 HELIX 13 AB4 HIS A 265 LEU A 275 1 11 SHEET 1 AA1 7 ARG A 42 PHE A 44 0 SHEET 2 AA1 7 LEU A 148 ARG A 158 -1 O TYR A 150 N ARG A 42 SHEET 3 AA1 7 LEU A 164 ALA A 176 -1 O VAL A 169 N ILE A 156 SHEET 4 AA1 7 LEU A 88 PHE A 93 1 N ASN A 92 O ILE A 174 SHEET 5 AA1 7 HIS A 217 LEU A 220 1 O HIS A 217 N ALA A 89 SHEET 6 AA1 7 HIS A 253 ALA A 257 1 O THR A 255 N LEU A 218 SHEET 7 AA1 7 THR A 66 THR A 70 1 N THR A 70 O PHE A 256 SITE 1 AC1 18 THR A 73 THR A 74 PHE A 93 SER A 95 SITE 2 AC1 18 GLY A 101 GLN A 108 ALA A 109 GLN A 110 SITE 3 AC1 18 GLU A 111 ASP A 113 ALA A 222 GLY A 224 SITE 4 AC1 18 CYS A 225 GLY A 226 VAL A 227 PHE A 228 SITE 5 AC1 18 ALA A 257 LEU A 259 SITE 1 AC2 6 ARG A 82 SER A 86 ALA A 87 LEU A 88 SITE 2 AC2 6 GLN A 153 ASN A 172 CRYST1 42.713 56.944 97.451 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010262 0.00000