HEADER LIGASE 23-FEB-18 5ZDO TITLE CRYSTAL STRUCTURE ANALYSIS OF TTQRS IN CO-CRYSTALLISED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE-TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.1.1.18; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA0549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS GLNRS, QRS, LIGASE, SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MUTHARASAPPAN,V.JAIN,A.SHARMA,Y.MANICKAM,J.JEYARAMAN REVDAT 2 22-NOV-23 5ZDO 1 REMARK REVDAT 1 05-DEC-18 5ZDO 0 JRNL AUTH M.NACHIAPPAN,V.JAIN,A.SHARMA,M.YOGAVEL,J.JEYAKANTHAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF GLUTAMINYL-TRNA JRNL TITL 2 SYNTHETASE (TTGLNRS) FROM THERMUS THERMOPHILUS HB8 AND ITS JRNL TITL 3 COMPLEXES JRNL REF INT. J. BIOL. MACROMOL. V. 120 1379 2018 JRNL REFN ISSN 1879-0003 JRNL PMID 30248426 JRNL DOI 10.1016/J.IJBIOMAC.2018.09.115 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.4280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.07000 REMARK 3 B22 (A**2) : 2.54000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.375 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.238 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4441 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6042 ; 1.689 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 535 ; 7.076 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;31.892 ;22.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;17.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;20.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3481 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5ZDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-18. REMARK 100 THE DEPOSITION ID IS D_1300006891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE TRIHYDRATE PH 6.5, 30% W/V POLYETHYLENE GLYCOL 8,000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.93400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.69650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.93400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.69650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 225 REMARK 465 PHE A 226 REMARK 465 GLU A 227 REMARK 465 ASN A 228 REMARK 465 ASN A 229 REMARK 465 ARG A 230 REMARK 465 GLU A 544 REMARK 465 GLY A 545 REMARK 465 TYR A 546 REMARK 465 ARG A 547 REMARK 465 VAL A 548 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 PHE A 8 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 THR A 231 OG1 CG2 REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 317 CG OD1 ND2 REMARK 470 ARG A 368 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 397 NZ REMARK 470 THR A 439 OG1 CG2 REMARK 470 GLU A 445 CD OE1 OE2 REMARK 470 ASP A 484 CG OD1 OD2 REMARK 470 GLN A 487 CG CD OE1 NE2 REMARK 470 LYS A 543 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 30 N - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 GLY A 438 N - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 23 -74.29 -74.06 REMARK 500 ASP A 65 76.88 -117.34 REMARK 500 GLU A 140 43.45 -107.19 REMARK 500 ILE A 169 -88.30 -121.76 REMARK 500 ARG A 259 136.77 -35.48 REMARK 500 ALA A 319 136.95 -39.96 REMARK 500 LYS A 372 132.55 -39.98 REMARK 500 ARG A 401 -158.11 -118.90 REMARK 500 ALA A 413 -154.27 -146.22 REMARK 500 ARG A 518 8.30 57.33 REMARK 500 ALA A 533 71.07 -162.80 REMARK 500 VAL A 540 142.82 -173.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 514 GLN A 515 149.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 DBREF 5ZDO A 1 548 UNP Q5SKU4 Q5SKU4_THET8 1 548 SEQRES 1 A 548 MET GLY LEU VAL PRO GLU CYS PHE ILE THR GLU LEU VAL SEQRES 2 A 548 GLU ARG ASP LEU LYS GLU GLY LYS TYR ALA LYS LEU VAL SEQRES 3 A 548 THR ARG PHE PRO PRO GLU PRO ASN GLY TYR LEU HIS ILE SEQRES 4 A 548 GLY HIS ALA ARG SER ILE VAL LEU ASN PHE GLY LEU ALA SEQRES 5 A 548 GLN ASP TYR GLY GLY GLU CYS ASN LEU ARG PHE ASP ASP SEQRES 6 A 548 THR ASN PRO GLU THR GLU LYS GLU GLU TYR ALA ARG ALA SEQRES 7 A 548 ILE GLU GLU ASP VAL ARG TRP LEU GLY PHE ARG PRO THR SEQRES 8 A 548 ARG VAL LEU TYR ALA SER ASP TYR PHE GLU THR MET TYR SEQRES 9 A 548 GLN CYS ALA LEU VAL LEU ILE GLN GLU GLY LYS ALA TYR SEQRES 10 A 548 VAL ASP ASP LEU PRO GLU GLU GLU MET SER GLU LEU ARG SEQRES 11 A 548 ALA GLN GLY LYS PRO SER PRO TYR ARG GLU ARG SER VAL SEQRES 12 A 548 GLU GLU ASN LEU GLU LEU PHE GLU ARG MET ARG ARG GLY SEQRES 13 A 548 GLU PHE PRO THR GLY SER ARG VAL LEU ARG ALA LYS ILE SEQRES 14 A 548 ASP PRO ALA HIS PRO ASN PHE LYS LEU ARG ASP PRO VAL SEQRES 15 A 548 LEU TYR ARG ILE VAL HIS ALA PRO HIS TYR HIS VAL GLY SEQRES 16 A 548 ASP ARG TRP VAL ILE TYR PRO MET TYR ASP PHE ALA HIS SEQRES 17 A 548 PRO LEU GLU ASP PHE ILE GLU GLY VAL THR HIS SER LEU SEQRES 18 A 548 CYS THR LEU GLU PHE GLU ASN ASN ARG THR VAL TYR ASP SEQRES 19 A 548 TRP VAL ILE GLU ASN LEU LYS GLY LYS CYS GLY LEU PRO SEQRES 20 A 548 THR SER PRO ARG PRO HIS GLN TYR GLU PHE ALA ARG LEU SEQRES 21 A 548 ASP LEU SER HIS THR VAL LEU SER LYS ARG LYS LEU ILE SEQRES 22 A 548 LYS LEU VAL GLU GLY GLY TYR VAL SER GLY TRP ASP ASP SEQRES 23 A 548 PRO ARG LEU PRO THR LEU ARG GLY LEU ARG ARG ARG GLY SEQRES 24 A 548 VAL ARG PRO GLU ALA ILE VAL GLU PHE VAL ARG LYS THR SEQRES 25 A 548 GLY ILE SER ARG ASN GLU ALA GLN ILE GLU MET ASP LEU SEQRES 26 A 548 PHE GLU GLU VAL VAL ARG ASP ASP LEU ASN PRO ILE ALA SEQRES 27 A 548 PRO ARG VAL LEU GLY VAL VAL ASP PRO LEU LYS VAL VAL SEQRES 28 A 548 LEU THR ASN TYR GLU GLY GLU GLU TRP ILE GLU ALA PRO SEQRES 29 A 548 TYR TRP PRO ARG ASP ILE PRO LYS GLU GLY THR ARG PRO SEQRES 30 A 548 LEU PRO PHE SER PRO GLU LEU TYR ILE GLU ARG THR ASP SEQRES 31 A 548 PHE SER LEU ASN PRO PRO LYS GLY TRP LYS ARG LEU ALA SEQRES 32 A 548 PRO GLY GLN ARG VAL ARG LEU ARG HIS ALA TYR VAL ILE SEQRES 33 A 548 GLU LEU GLU ASP VAL VAL GLU GLU GLY GLY GLU VAL ARG SEQRES 34 A 548 LEU LEU LYS ALA ARG ILE VAL PRO GLY THR LEU GLY ALA SEQRES 35 A 548 ASN PRO GLU ASP GLY VAL ARG PRO LYS GLY VAL ILE HIS SEQRES 36 A 548 TRP VAL SER ALA ARG HIS ALA LEU PRO VAL GLU PHE ARG SEQRES 37 A 548 LEU TYR GLY ARG LEU PHE ARG THR LYS ASP PRO GLU GLU SEQRES 38 A 548 GLY GLY ASP PHE LEU GLN ASN LEU ASN PRO GLU ALA LEU SEQRES 39 A 548 VAL VAL LYS ARG GLY PHE ILE GLU PRO SER VAL ALA GLN SEQRES 40 A 548 ASP PRO GLU ASP THR ARG TYR GLN LEU GLU ARG LEU GLY SEQRES 41 A 548 TYR PHE TRP ARG ASP PRO VAL ASP SER ARG PRO GLU ALA SEQRES 42 A 548 LEU VAL MET ASN ARG ILE VAL PRO LEU LYS GLU GLY TYR SEQRES 43 A 548 ARG VAL HET CL A 601 1 HETNAM CL CHLORIDE ION FORMUL 2 CL CL 1- HELIX 1 AA1 CYS A 7 GLU A 19 1 13 HELIX 2 AA2 GLY A 40 TYR A 55 1 16 HELIX 3 AA3 LYS A 72 LEU A 86 1 15 HELIX 4 AA4 TYR A 99 GLU A 113 1 15 HELIX 5 AA5 PRO A 122 GLY A 133 1 12 HELIX 6 AA6 SER A 136 ARG A 141 5 6 HELIX 7 AA7 SER A 142 ARG A 155 1 14 HELIX 8 AA8 ASN A 175 ARG A 179 5 5 HELIX 9 AA9 MET A 203 GLY A 216 1 14 HELIX 10 AB1 VAL A 232 ASN A 239 1 8 HELIX 11 AB2 SER A 268 GLY A 278 1 11 HELIX 12 AB3 THR A 291 GLY A 299 1 9 HELIX 13 AB4 ARG A 301 THR A 312 1 12 HELIX 14 AB5 GLU A 322 ASN A 335 1 14 HELIX 15 AB6 THR A 389 PHE A 391 5 3 HELIX 16 AB7 PHE A 485 LEU A 489 5 5 HELIX 17 AB8 PRO A 503 ASP A 508 5 6 SHEET 1 AA1 3 VAL A 26 PHE A 29 0 SHEET 2 AA1 3 GLU A 58 PHE A 63 1 O ASN A 60 N PHE A 29 SHEET 3 AA1 3 ARG A 92 TYR A 95 1 O LEU A 94 N PHE A 63 SHEET 1 AA2 4 ALA A 116 ASP A 119 0 SHEET 2 AA2 4 VAL A 164 ALA A 167 -1 O ARG A 166 N TYR A 117 SHEET 3 AA2 4 VAL A 182 ILE A 186 -1 O LEU A 183 N LEU A 165 SHEET 4 AA2 4 ILE A 200 PRO A 202 -1 O TYR A 201 N ARG A 185 SHEET 1 AA3 2 HIS A 219 THR A 223 0 SHEET 2 AA3 2 HIS A 253 PHE A 257 1 O HIS A 253 N SER A 220 SHEET 1 AA4 7 ARG A 340 VAL A 341 0 SHEET 2 AA4 7 ARG A 513 LEU A 516 1 O GLN A 515 N VAL A 341 SHEET 3 AA4 7 GLY A 520 ARG A 524 -1 O PHE A 522 N TYR A 514 SHEET 4 AA4 7 LEU A 534 VAL A 540 -1 O VAL A 540 N TYR A 521 SHEET 5 AA4 7 LEU A 463 TYR A 470 1 N ARG A 468 O MET A 536 SHEET 6 AA4 7 LEU A 494 ILE A 501 -1 O LYS A 497 N PHE A 467 SHEET 7 AA4 7 GLY A 343 VAL A 344 -1 N VAL A 344 O PHE A 500 SHEET 1 AA5 7 VAL A 453 ILE A 454 0 SHEET 2 AA5 7 ARG A 407 LEU A 410 1 N ARG A 409 O ILE A 454 SHEET 3 AA5 7 VAL A 415 GLU A 424 -1 O ILE A 416 N VAL A 408 SHEET 4 AA5 7 GLU A 427 VAL A 436 -1 O LYS A 432 N GLU A 419 SHEET 5 AA5 7 PRO A 347 LEU A 352 1 N VAL A 351 O LEU A 431 SHEET 6 AA5 7 GLU A 383 GLU A 387 -1 O ILE A 386 N LEU A 348 SHEET 7 AA5 7 VAL A 457 SER A 458 -1 O VAL A 457 N TYR A 385 SHEET 1 AA6 2 GLU A 359 PRO A 364 0 SHEET 2 AA6 2 THR A 375 PHE A 380 -1 O PHE A 380 N GLU A 359 SSBOND 1 CYS A 106 CYS A 244 1555 1555 2.06 CISPEP 1 SER A 249 PRO A 250 0 0.11 CISPEP 2 PRO A 437 GLY A 438 0 -12.94 SITE 1 AC1 2 ARG A 411 HIS A 412 CRYST1 143.868 39.393 115.837 90.00 116.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006951 0.000000 0.003514 0.00000 SCALE2 0.000000 0.025385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009673 0.00000