HEADER TRANSFERASE 27-FEB-18 5ZES TITLE UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE FROM TITLE 2 SYNECHOCOCCUS SPECIES PCC 7942 - UDP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE:TETRAHYDROBIOPTERIN GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-354; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS (STRAIN PCC 7942); SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 4 ORGANISM_TAXID: 1140; SOURCE 5 STRAIN: PCC 7942; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TETRAHYDROBIOPTERIN, PTERIDINE GLYCOSYLTRANSFERASE, PTERIDINE KEYWDS 2 GLYCOSIDES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KILLIVALAVAN,K.H.LEE REVDAT 2 06-NOV-24 5ZES 1 REMARK REVDAT 1 06-MAR-19 5ZES 0 JRNL AUTH A.KILLIVALAVAN,K.H.LEE JRNL TITL UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE JRNL TITL 2 FROM SYNECHOCOCCUS SPECIES PCC 7942 - UDP COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2295 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3108 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5534 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5092 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7559 ; 1.925 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11788 ; 1.131 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 702 ; 7.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;39.534 ;23.840 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;16.371 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.775 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6240 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1129 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2817 ; 3.704 ; 3.815 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2816 ; 3.697 ; 3.813 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3516 ; 5.696 ; 5.699 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3517 ; 5.698 ; 5.701 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2717 ; 4.391 ; 4.354 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2717 ; 4.388 ; 4.354 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4044 ; 6.704 ; 6.330 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6064 ; 9.694 ;46.415 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6065 ; 9.693 ;46.424 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979,0.979,0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEG3350, GALACTOSE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.90500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.34900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.90500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.34900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 203 O HOH B 401 1.84 REMARK 500 O1 GOL A 403 O HOH A 501 2.07 REMARK 500 OE2 GLU A 297 OH TYR A 327 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG A 329 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 38 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 216 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 329 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 335 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 335 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 -25.88 76.59 REMARK 500 THR A 67 -39.78 -38.88 REMARK 500 ALA A 68 20.10 83.74 REMARK 500 SER A 70 140.01 -30.20 REMARK 500 HIS A 71 -119.10 53.35 REMARK 500 ALA A 196 156.21 179.18 REMARK 500 GLU A 223 106.15 80.59 REMARK 500 TRP A 227 -82.72 -47.76 REMARK 500 GLN A 228 141.03 -39.28 REMARK 500 ARG A 229 -26.00 107.73 REMARK 500 PHE A 234 -67.50 -120.32 REMARK 500 ASP A 236 -68.21 107.23 REMARK 500 VAL A 267 101.95 117.55 REMARK 500 ALA A 269 37.29 75.53 REMARK 500 ARG B 20 37.53 -146.42 REMARK 500 ASP B 54 -7.60 72.01 REMARK 500 ALA B 68 -89.26 30.33 REMARK 500 SER B 70 -74.67 -34.30 REMARK 500 HIS B 71 46.40 -102.02 REMARK 500 PHE B 244 -73.54 -82.27 REMARK 500 VAL B 245 140.06 80.14 REMARK 500 LYS B 300 -56.98 -130.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 232 GLN A 233 149.90 REMARK 500 GLY A 235 ASP A 236 145.49 REMARK 500 TRP A 266 VAL A 267 -144.28 REMARK 500 MSE B 128 GLY B 129 53.81 REMARK 500 PHE B 244 VAL B 245 149.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 DBREF 5ZES A 2 354 UNP Q93EY3 Q93EY3_SYNE7 2 354 DBREF 5ZES B 2 354 UNP Q93EY3 Q93EY3_SYNE7 2 354 SEQRES 1 A 353 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 A 353 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 A 353 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 A 353 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 A 353 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 A 353 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 A 353 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 A 353 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 A 353 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 A 353 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 A 353 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 A 353 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 A 353 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 A 353 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 A 353 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 A 353 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 A 353 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 A 353 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 A 353 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 A 353 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 A 353 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 A 353 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 A 353 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 A 353 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 A 353 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 A 353 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 A 353 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 A 353 LEU SER SEQRES 1 B 353 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 B 353 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 B 353 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 B 353 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 B 353 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 B 353 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 B 353 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 B 353 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 B 353 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 B 353 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 B 353 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 B 353 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 B 353 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 B 353 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 B 353 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 B 353 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 B 353 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 B 353 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 B 353 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 B 353 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 B 353 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 B 353 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 B 353 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 B 353 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 B 353 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 B 353 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 B 353 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 B 353 LEU SER MODRES 5ZES MSE A 128 MET MODIFIED RESIDUE MODRES 5ZES MSE A 135 MET MODIFIED RESIDUE MODRES 5ZES MSE A 262 MET MODIFIED RESIDUE MODRES 5ZES MSE A 341 MET MODIFIED RESIDUE MODRES 5ZES MSE B 128 MET MODIFIED RESIDUE MODRES 5ZES MSE B 135 MET MODIFIED RESIDUE MODRES 5ZES MSE B 262 MET MODIFIED RESIDUE MODRES 5ZES MSE B 341 MET MODIFIED RESIDUE HET MSE A 128 8 HET MSE A 135 8 HET MSE A 262 8 HET MSE A 341 8 HET MSE B 128 8 HET MSE B 135 8 HET MSE B 262 8 HET MSE B 341 8 HET UDP A 401 25 HET GOL A 402 6 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *178(H2 O) HELIX 1 AA1 GLY A 23 GLN A 37 1 15 HELIX 2 AA2 SER A 83 GLN A 95 1 13 HELIX 3 AA3 GLN A 96 PHE A 99 5 4 HELIX 4 AA4 ASP A 108 THR A 115 1 8 HELIX 5 AA5 PRO A 116 PHE A 118 5 3 HELIX 6 AA6 SER A 132 TYR A 146 1 15 HELIX 7 AA7 SER A 154 ALA A 159 1 6 HELIX 8 AA8 PHE A 163 CYS A 167 5 5 HELIX 9 AA9 ASP A 175 TYR A 179 5 5 HELIX 10 AB1 GLY A 200 ALA A 211 1 12 HELIX 11 AB2 GLU A 223 GLN A 228 1 6 HELIX 12 AB3 SER A 246 GLY A 255 1 10 HELIX 13 AB4 GLY A 271 CYS A 280 1 10 HELIX 14 AB5 GLY A 290 ILE A 295 5 6 HELIX 15 AB6 GLN A 309 GLN A 319 1 11 HELIX 16 AB7 LEU A 320 LEU A 323 5 4 HELIX 17 AB8 ASP A 324 PHE A 336 1 13 HELIX 18 AB9 SER A 337 LEU A 350 1 14 HELIX 19 AC1 PRO A 351 LEU A 353 5 3 HELIX 20 AC2 GLY B 23 GLN B 37 1 15 HELIX 21 AC3 HIS B 71 THR B 75 5 5 HELIX 22 AC4 SER B 83 GLN B 95 1 13 HELIX 23 AC5 GLN B 96 PHE B 99 5 4 HELIX 24 AC6 ASP B 108 THR B 115 1 8 HELIX 25 AC7 PRO B 116 PHE B 118 5 3 HELIX 26 AC8 SER B 132 TYR B 146 1 15 HELIX 27 AC9 SER B 154 THR B 160 1 7 HELIX 28 AD1 PHE B 163 CYS B 167 5 5 HELIX 29 AD2 ASP B 175 TYR B 179 5 5 HELIX 30 AD3 GLY B 200 GLY B 212 1 13 HELIX 31 AD4 GLU B 223 GLY B 235 1 13 HELIX 32 AD5 SER B 246 ARG B 256 1 11 HELIX 33 AD6 LYS B 265 ALA B 269 5 5 HELIX 34 AD7 GLY B 271 CYS B 280 1 10 HELIX 35 AD8 GLY B 291 ILE B 296 1 6 HELIX 36 AD9 GLN B 309 GLN B 319 1 11 HELIX 37 AE1 LEU B 320 LEU B 323 5 4 HELIX 38 AE2 ASP B 324 PHE B 336 1 13 HELIX 39 AE3 SER B 337 LEU B 350 1 14 HELIX 40 AE4 PRO B 351 LEU B 353 5 3 SHEET 1 AA1 7 LEU A 57 VAL A 60 0 SHEET 2 AA1 7 GLN A 41 PRO A 47 1 N VAL A 44 O GLU A 58 SHEET 3 AA1 7 ARG A 5 VAL A 9 1 N PHE A 8 O SER A 43 SHEET 4 AA1 7 LEU A 101 ASN A 104 1 O LEU A 103 N LEU A 7 SHEET 5 AA1 7 VAL A 122 LEU A 125 1 O ALA A 123 N ASN A 104 SHEET 6 AA1 7 ILE A 150 VAL A 152 1 O ALA A 151 N HIS A 124 SHEET 7 AA1 7 LEU A 168 CYS A 169 1 O LEU A 168 N VAL A 152 SHEET 1 AA2 6 SER A 240 TYR A 241 0 SHEET 2 AA2 6 LEU A 215 TRP A 218 1 N VAL A 217 O SER A 240 SHEET 3 AA2 6 LEU A 189 VAL A 192 1 N LEU A 189 O ARG A 216 SHEET 4 AA2 6 GLY A 259 MSE A 262 1 O LEU A 261 N GLY A 190 SHEET 5 AA2 6 VAL A 284 TYR A 287 1 O ILE A 285 N LEU A 260 SHEET 6 AA2 6 GLY A 302 VAL A 305 1 O TRP A 303 N ALA A 286 SHEET 1 AA3 7 LEU B 57 VAL B 60 0 SHEET 2 AA3 7 GLN B 41 PRO B 47 1 N ALA B 46 O GLU B 58 SHEET 3 AA3 7 ARG B 5 VAL B 9 1 N PHE B 6 O GLN B 41 SHEET 4 AA3 7 LEU B 101 ASN B 104 1 O LEU B 103 N LEU B 7 SHEET 5 AA3 7 VAL B 122 ILE B 126 1 O ALA B 123 N ASN B 104 SHEET 6 AA3 7 ILE B 150 VAL B 152 1 O ALA B 151 N ILE B 126 SHEET 7 AA3 7 LEU B 168 CYS B 169 1 O LEU B 168 N VAL B 152 SHEET 1 AA4 6 VAL B 239 GLY B 243 0 SHEET 2 AA4 6 LEU B 215 TRP B 218 1 N VAL B 217 O GLN B 242 SHEET 3 AA4 6 LEU B 189 VAL B 192 1 N LEU B 189 O ARG B 216 SHEET 4 AA4 6 GLY B 259 MSE B 262 1 O LEU B 261 N GLY B 190 SHEET 5 AA4 6 VAL B 284 TYR B 287 1 O ILE B 285 N MSE B 262 SHEET 6 AA4 6 GLY B 302 VAL B 305 1 O VAL B 305 N ALA B 286 LINK C SER A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N GLY A 129 1555 1555 1.34 LINK C VAL A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N ASP A 136 1555 1555 1.35 LINK C LEU A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N THR A 263 1555 1555 1.32 LINK C ALA A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N GLY A 342 1555 1555 1.33 LINK C SER B 127 N MSE B 128 1555 1555 1.32 LINK C MSE B 128 N GLY B 129 1555 1555 1.33 LINK C VAL B 134 N MSE B 135 1555 1555 1.34 LINK C MSE B 135 N ASP B 136 1555 1555 1.33 LINK C LEU B 261 N MSE B 262 1555 1555 1.32 LINK C MSE B 262 N THR B 263 1555 1555 1.32 LINK C ALA B 340 N MSE B 341 1555 1555 1.34 LINK C MSE B 341 N GLY B 342 1555 1555 1.33 CISPEP 1 VAL A 267 GLU A 268 0 -7.01 CISPEP 2 GLU A 268 ALA A 269 0 2.74 SITE 1 AC1 15 GLY A 22 GLY A 23 LEU A 26 VAL A 192 SITE 2 AC1 15 GLY A 193 ARG A 194 TRP A 218 GLY A 219 SITE 3 AC1 15 PHE A 244 VAL A 245 ASN A 272 VAL A 273 SITE 4 AC1 15 GLU A 276 GOL A 403 HOH A 557 SITE 1 AC2 3 GLY A 62 THR A 63 TRP A 64 SITE 1 AC3 9 GLY A 19 GLY A 22 GLY A 193 ARG A 194 SITE 2 AC3 9 GLY A 219 ALA A 220 PHE A 244 UDP A 401 SITE 3 AC3 9 HOH A 501 CRYST1 171.810 78.698 53.605 90.00 90.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005820 0.000000 0.000088 0.00000 SCALE2 0.000000 0.012707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018657 0.00000