HEADER OXIDOREDUCTASE 02-MAR-18 5ZF1 TITLE MOLECULAR STRUCTURE OF A NOVEL 5,10-METHYLENETETRAHYDROFOLATE TITLE 2 DEHYDROGENASE FROM THE SILKWORM, BOMBYX MORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5,10-METHYLENETETRAHYDROFOLATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: LOC101741628; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEPIDOPTERA, 5, 10-METHYLENETETRAHYDROFOLATE DEHYDROGENASE, NADP+, KEYWDS 2 SERINE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HAQUE,A.HIGASHIURA,A.NAKAGAWA,K.YAMAMOTO REVDAT 3 27-MAR-24 5ZF1 1 REMARK REVDAT 2 01-MAY-19 5ZF1 1 JRNL REVDAT 1 23-JAN-19 5ZF1 0 JRNL AUTH M.R.HAQUE,A.HIGASHIURA,A.NAKAGAWA,A.HIROWATARI,S.FURUYA, JRNL AUTH 2 K.YAMAMOTO JRNL TITL MOLECULAR STRUCTURE OF A 5,10-METHYLENETETRAHYDROFOLATE JRNL TITL 2 DEHYDROGENASE FROM THE SILKWORMBOMBYX MORI. JRNL REF FEBS OPEN BIO V. 9 618 2019 JRNL REFN ESSN 2211-5463 JRNL PMID 30984537 JRNL DOI 10.1002/2211-5463.12595 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 100664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 4958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3042 - 5.4301 0.82 2693 138 0.2160 0.2461 REMARK 3 2 5.4301 - 4.3119 0.97 3147 172 0.1901 0.2151 REMARK 3 3 4.3119 - 3.7674 0.99 3225 139 0.1859 0.2286 REMARK 3 4 3.7674 - 3.4232 1.00 3221 175 0.1943 0.2207 REMARK 3 5 3.4232 - 3.1780 1.00 3222 169 0.2097 0.2430 REMARK 3 6 3.1780 - 2.9907 1.00 3215 159 0.2224 0.2424 REMARK 3 7 2.9907 - 2.8409 1.00 3243 157 0.2203 0.2774 REMARK 3 8 2.8409 - 2.7173 1.00 3199 175 0.2214 0.2607 REMARK 3 9 2.7173 - 2.6127 1.00 3203 186 0.2148 0.2264 REMARK 3 10 2.6127 - 2.5226 1.00 3245 153 0.2089 0.2364 REMARK 3 11 2.5226 - 2.4437 1.00 3206 171 0.2109 0.2304 REMARK 3 12 2.4437 - 2.3739 1.00 3207 179 0.2162 0.2333 REMARK 3 13 2.3739 - 2.3114 1.00 3202 139 0.2070 0.2410 REMARK 3 14 2.3114 - 2.2550 1.00 3195 177 0.2173 0.2391 REMARK 3 15 2.2550 - 2.2038 1.00 3233 159 0.2120 0.2389 REMARK 3 16 2.2038 - 2.1569 1.00 3195 197 0.2181 0.2284 REMARK 3 17 2.1569 - 2.1137 1.00 3218 155 0.2166 0.2450 REMARK 3 18 2.1137 - 2.0738 1.00 3222 148 0.2247 0.2503 REMARK 3 19 2.0738 - 2.0368 1.00 3173 184 0.2227 0.2505 REMARK 3 20 2.0368 - 2.0023 1.00 3213 168 0.2262 0.2751 REMARK 3 21 2.0023 - 1.9700 1.00 3220 158 0.2280 0.2631 REMARK 3 22 1.9700 - 1.9397 1.00 3248 148 0.2225 0.2327 REMARK 3 23 1.9397 - 1.9111 1.00 3164 150 0.2207 0.2487 REMARK 3 24 1.9111 - 1.8842 1.00 3230 198 0.2328 0.2792 REMARK 3 25 1.8842 - 1.8588 1.00 3179 178 0.2395 0.2873 REMARK 3 26 1.8588 - 1.8346 1.00 3194 155 0.2443 0.2590 REMARK 3 27 1.8346 - 1.8117 1.00 3162 195 0.2464 0.2778 REMARK 3 28 1.8117 - 1.7899 1.00 3208 157 0.2434 0.2756 REMARK 3 29 1.7899 - 1.7691 1.00 3229 171 0.2531 0.3057 REMARK 3 30 1.7691 - 1.7492 0.99 3195 148 0.2528 0.2656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4578 REMARK 3 ANGLE : 0.869 6233 REMARK 3 CHIRALITY : 0.057 752 REMARK 3 PLANARITY : 0.006 807 REMARK 3 DIHEDRAL : 6.273 3867 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT EOS CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100729 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE TRIHYDRATE, 30% PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.65300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.47950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.82650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 THR A 246 REMARK 465 ASP A 247 REMARK 465 GLU A 248 REMARK 465 ASN A 249 REMARK 465 GLY A 250 REMARK 465 LYS A 251 REMARK 465 SER A 252 REMARK 465 ARG A 253 REMARK 465 SER A 300 REMARK 465 ASN A 301 REMARK 465 THR B 244 REMARK 465 ARG B 245 REMARK 465 THR B 246 REMARK 465 ASP B 247 REMARK 465 GLU B 248 REMARK 465 ASN B 249 REMARK 465 GLY B 250 REMARK 465 LYS B 251 REMARK 465 SER B 252 REMARK 465 SER B 300 REMARK 465 ASN B 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 ASP A 43 CG OD1 OD2 REMARK 470 ARG A 108 NE CZ NH1 NH2 REMARK 470 THR A 244 OG1 CG2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS B 182 CG CD CE NZ REMARK 470 ARG B 253 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 254 CG CD1 CD2 REMARK 470 VAL B 255 CG1 CG2 REMARK 470 LYS B 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 186 O HOH B 501 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 95 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 97 92.02 -69.45 REMARK 500 ASP A 133 34.32 70.41 REMARK 500 VAL A 170 -64.72 -130.88 REMARK 500 ALA A 219 56.14 -142.00 REMARK 500 LEU B 98 40.44 -96.75 REMARK 500 VAL B 170 -61.58 -132.73 REMARK 500 LEU B 188 43.66 -83.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 98 PRO B 99 144.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 DBREF 5ZF1 A 1 301 PDB 5ZF1 5ZF1 1 301 DBREF 5ZF1 B 1 301 PDB 5ZF1 5ZF1 1 301 SEQRES 1 A 301 MET ALA ARG ILE LEU ASP GLY LYS ALA LEU ALA MET GLU SEQRES 2 A 301 ILE LYS LYS GLU LEU LYS GLN LYS ILE ALA GLN TRP VAL SEQRES 3 A 301 SER LEU GLY ASN ARG ALA PRO THR ILE ARG CYS ILE ILE SEQRES 4 A 301 VAL GLY ASP ASP PRO ALA SER HIS THR TYR VAL ARG ASN SEQRES 5 A 301 LYS VAL GLU ALA ALA LYS PHE VAL GLY ILE ASP ALA LEU SEQRES 6 A 301 THR ILE ASN ARG ASP SER ASP ILE THR GLU GLU GLN LEU SEQRES 7 A 301 LEU SER GLU ILE GLN ASN LEU ASN GLU ASP ASN SER VAL SEQRES 8 A 301 ASP GLY ILE LEU VAL GLN LEU PRO VAL PRO ASP THR ILE SEQRES 9 A 301 ASN GLU ARG ARG VAL CYS ASP ALA ILE ALA PRO GLU LYS SEQRES 10 A 301 ASP ILE ASP GLY PHE HIS ILE ILE ASN ILE GLY ARG LEU SEQRES 11 A 301 CYS VAL ASP LEU PRO THR ILE VAL PRO ALA THR ALA LEU SEQRES 12 A 301 ALA VAL VAL GLU MET LEU LYS ARG PHE ASN ILE ASP THR SEQRES 13 A 301 PHE GLY ARG ASN ALA VAL VAL ILE GLY ARG SER LYS ASN SEQRES 14 A 301 VAL GLY MET PRO ILE ALA MET MET LEU HIS SER ASP LYS SEQRES 15 A 301 ARG HIS GLU SER GLY LEU GLY MET ASP ALA THR VAL THR SEQRES 16 A 301 ILE CYS HIS ARG TYR THR PRO LYS ASP LYS LEU GLU ALA SEQRES 17 A 301 TYR CYS ARG ASN ALA ASP ILE ILE ILE THR ALA THR GLY SEQRES 18 A 301 LEU PRO LYS LEU ILE LYS ALA ASP MET VAL LYS PRO GLY SEQRES 19 A 301 ALA THR ILE ILE ASP VAL GLY ILE THR THR ARG THR ASP SEQRES 20 A 301 GLU ASN GLY LYS SER ARG LEU VAL GLY ASP VAL ASP TYR SEQRES 21 A 301 GLU GLU VAL SER LYS ILE ALA GLY ALA ILE THR PRO VAL SEQRES 22 A 301 PRO GLY GLY VAL GLY PRO MET THR VAL ALA MET LEU MET SEQRES 23 A 301 HIS ASN THR PHE GLN ALA ALA GLN SER GLN ALA ASN LYS SEQRES 24 A 301 SER ASN SEQRES 1 B 301 MET ALA ARG ILE LEU ASP GLY LYS ALA LEU ALA MET GLU SEQRES 2 B 301 ILE LYS LYS GLU LEU LYS GLN LYS ILE ALA GLN TRP VAL SEQRES 3 B 301 SER LEU GLY ASN ARG ALA PRO THR ILE ARG CYS ILE ILE SEQRES 4 B 301 VAL GLY ASP ASP PRO ALA SER HIS THR TYR VAL ARG ASN SEQRES 5 B 301 LYS VAL GLU ALA ALA LYS PHE VAL GLY ILE ASP ALA LEU SEQRES 6 B 301 THR ILE ASN ARG ASP SER ASP ILE THR GLU GLU GLN LEU SEQRES 7 B 301 LEU SER GLU ILE GLN ASN LEU ASN GLU ASP ASN SER VAL SEQRES 8 B 301 ASP GLY ILE LEU VAL GLN LEU PRO VAL PRO ASP THR ILE SEQRES 9 B 301 ASN GLU ARG ARG VAL CYS ASP ALA ILE ALA PRO GLU LYS SEQRES 10 B 301 ASP ILE ASP GLY PHE HIS ILE ILE ASN ILE GLY ARG LEU SEQRES 11 B 301 CYS VAL ASP LEU PRO THR ILE VAL PRO ALA THR ALA LEU SEQRES 12 B 301 ALA VAL VAL GLU MET LEU LYS ARG PHE ASN ILE ASP THR SEQRES 13 B 301 PHE GLY ARG ASN ALA VAL VAL ILE GLY ARG SER LYS ASN SEQRES 14 B 301 VAL GLY MET PRO ILE ALA MET MET LEU HIS SER ASP LYS SEQRES 15 B 301 ARG HIS GLU SER GLY LEU GLY MET ASP ALA THR VAL THR SEQRES 16 B 301 ILE CYS HIS ARG TYR THR PRO LYS ASP LYS LEU GLU ALA SEQRES 17 B 301 TYR CYS ARG ASN ALA ASP ILE ILE ILE THR ALA THR GLY SEQRES 18 B 301 LEU PRO LYS LEU ILE LYS ALA ASP MET VAL LYS PRO GLY SEQRES 19 B 301 ALA THR ILE ILE ASP VAL GLY ILE THR THR ARG THR ASP SEQRES 20 B 301 GLU ASN GLY LYS SER ARG LEU VAL GLY ASP VAL ASP TYR SEQRES 21 B 301 GLU GLU VAL SER LYS ILE ALA GLY ALA ILE THR PRO VAL SEQRES 22 B 301 PRO GLY GLY VAL GLY PRO MET THR VAL ALA MET LEU MET SEQRES 23 B 301 HIS ASN THR PHE GLN ALA ALA GLN SER GLN ALA ASN LYS SEQRES 24 B 301 SER ASN HET SO4 A 401 5 HET EDO A 402 4 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET EDO B 404 4 HET EDO B 405 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 10 HOH *315(H2 O) HELIX 1 AA1 ASP A 6 SER A 27 1 22 HELIX 2 AA2 THR A 48 GLY A 61 1 14 HELIX 3 AA3 THR A 74 ASP A 88 1 15 HELIX 4 AA4 ASN A 105 ILE A 113 1 9 HELIX 5 AA5 ALA A 114 ASP A 118 5 5 HELIX 6 AA6 HIS A 123 VAL A 132 1 10 HELIX 7 AA7 PRO A 139 PHE A 152 1 14 HELIX 8 AA8 VAL A 170 SER A 180 1 11 HELIX 9 AA9 PRO A 202 ALA A 213 1 12 HELIX 10 AB1 LYS A 227 VAL A 231 5 5 HELIX 11 AB2 ASP A 259 SER A 264 1 6 HELIX 12 AB3 GLY A 276 LYS A 299 1 24 HELIX 13 AB4 ASP B 6 SER B 27 1 22 HELIX 14 AB5 ASP B 43 GLY B 61 1 19 HELIX 15 AB6 THR B 74 ASP B 88 1 15 HELIX 16 AB7 ASN B 105 ILE B 113 1 9 HELIX 17 AB8 ALA B 114 ASP B 118 5 5 HELIX 18 AB9 HIS B 123 VAL B 132 1 10 HELIX 19 AC1 PRO B 139 PHE B 152 1 14 HELIX 20 AC2 VAL B 170 HIS B 179 1 10 HELIX 21 AC3 PRO B 202 ASN B 212 1 11 HELIX 22 AC4 LYS B 227 VAL B 231 5 5 HELIX 23 AC5 ASP B 259 SER B 264 1 6 HELIX 24 AC6 GLY B 276 LYS B 299 1 24 SHEET 1 AA112 ARG A 3 ILE A 4 0 SHEET 2 AA112 ALA A 269 ILE A 270 1 O ILE A 270 N ARG A 3 SHEET 3 AA112 THR A 236 ASP A 239 1 N ILE A 237 O ALA A 269 SHEET 4 AA112 ILE A 215 THR A 218 1 N ILE A 216 O ILE A 238 SHEET 5 AA112 ASN A 160 ILE A 164 1 N VAL A 162 O ILE A 217 SHEET 6 AA112 THR A 193 CYS A 197 1 O THR A 193 N ALA A 161 SHEET 7 AA112 THR B 193 CYS B 197 -1 O ILE B 196 N VAL A 194 SHEET 8 AA112 ASN B 160 ILE B 164 1 N ALA B 161 O THR B 193 SHEET 9 AA112 ILE B 215 THR B 218 1 O ILE B 217 N ILE B 164 SHEET 10 AA112 THR B 236 ASP B 239 1 O ILE B 238 N ILE B 216 SHEET 11 AA112 ALA B 269 ILE B 270 1 O ALA B 269 N ILE B 237 SHEET 12 AA112 ARG B 3 ILE B 4 1 N ARG B 3 O ILE B 270 SHEET 1 AA2 3 ASP A 63 ARG A 69 0 SHEET 2 AA2 3 THR A 34 VAL A 40 1 N CYS A 37 O ILE A 67 SHEET 3 AA2 3 GLY A 93 VAL A 96 1 O LEU A 95 N ILE A 38 SHEET 1 AA3 3 ASP B 63 ARG B 69 0 SHEET 2 AA3 3 THR B 34 VAL B 40 1 N ILE B 39 O ARG B 69 SHEET 3 AA3 3 GLY B 93 VAL B 96 1 O LEU B 95 N ILE B 38 CISPEP 1 LEU A 98 PRO A 99 0 16.00 CISPEP 2 VAL A 273 PRO A 274 0 2.59 CISPEP 3 VAL B 273 PRO B 274 0 0.89 SITE 1 AC1 5 GLY A 165 ARG A 166 HIS A 198 ARG A 199 SITE 2 AC1 5 HOH A 502 SITE 1 AC2 2 HIS A 184 ARG B 199 SITE 1 AC3 9 GLY B 165 ARG B 166 HIS B 198 ARG B 199 SITE 2 AC3 9 THR B 220 LEU B 222 HOH B 527 HOH B 557 SITE 3 AC3 9 HOH B 598 SITE 1 AC4 6 PRO B 274 GLY B 275 GLY B 276 VAL B 277 SITE 2 AC4 6 GLY B 278 HOH B 610 SITE 1 AC5 5 ARG A 159 ASP B 214 LYS B 232 HOH B 502 SITE 2 AC5 5 HOH B 512 SITE 1 AC6 4 ALA A 208 TYR A 209 ASN B 212 HOH B 572 SITE 1 AC7 5 THR B 156 GLY B 189 MET B 190 LYS B 203 SITE 2 AC7 5 HOH B 594 CRYST1 89.789 89.789 127.306 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011137 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007855 0.00000