HEADER TRANSFERASE 06-MAR-18 5ZFG TITLE CRYSTAL STRUCTURE OF A DIAZINON-METABOLIZING GLUTATHIONE S-TRANSFERASE TITLE 2 IN THE SILKWORM, BOMBYX MORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE S-TRANSFERASE 7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: BMGSTU2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEPIDOPTERA, GLUTATHIONE, GLUTATHIONE TRANSFERASE, DIAZINON, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,A.HIGASHIURA,A.NAKAGAWA REVDAT 3 27-MAR-24 5ZFG 1 REMARK REVDAT 2 25-SEP-19 5ZFG 1 JRNL REVDAT 1 12-SEP-18 5ZFG 0 JRNL AUTH K.YAMAMOTO,A.HIGASHIURA,A.HIROWATARI,N.YAMADA,T.TSUBOTA, JRNL AUTH 2 H.SEZUTSU,A.NAKAGAWA JRNL TITL CHARACTERISATION OF A DIAZINON-METABOLISING GLUTATHIONE JRNL TITL 2 S-TRANSFERASE IN THE SILKWORM BOMBYX MORI BY X-RAY JRNL TITL 3 CRYSTALLOGRAPHY AND GENOME EDITING ANALYSIS. JRNL REF SCI REP V. 8 16835 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 30443011 JRNL DOI 10.1038/S41598-018-35207-8 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 44320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3329 - 4.2379 0.94 2829 150 0.1740 0.2023 REMARK 3 2 4.2379 - 3.3642 1.00 2933 151 0.1540 0.1707 REMARK 3 3 3.3642 - 2.9390 1.00 2912 162 0.1824 0.2102 REMARK 3 4 2.9390 - 2.6704 1.00 2902 188 0.1851 0.2337 REMARK 3 5 2.6704 - 2.4790 1.00 2889 176 0.1892 0.2050 REMARK 3 6 2.4790 - 2.3328 1.00 2897 174 0.1865 0.2332 REMARK 3 7 2.3328 - 2.2160 1.00 2898 136 0.1892 0.2278 REMARK 3 8 2.2160 - 2.1196 1.00 2953 137 0.1861 0.2524 REMARK 3 9 2.1196 - 2.0380 1.00 2920 152 0.2068 0.2539 REMARK 3 10 2.0380 - 1.9676 1.00 2888 128 0.2024 0.2544 REMARK 3 11 1.9676 - 1.9061 1.00 2918 154 0.2092 0.2331 REMARK 3 12 1.9061 - 1.8516 0.92 2690 118 0.2212 0.2659 REMARK 3 13 1.8516 - 1.8029 0.79 2274 128 0.2207 0.2530 REMARK 3 14 1.8029 - 1.7589 0.70 2023 116 0.2181 0.2603 REMARK 3 15 1.7589 - 1.7189 0.60 1719 93 0.2144 0.2678 REMARK 3 16 1.7189 - 1.6823 0.49 1445 67 0.2256 0.3105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3455 REMARK 3 ANGLE : 0.832 4710 REMARK 3 CHIRALITY : 0.053 527 REMARK 3 PLANARITY : 0.006 598 REMARK 3 DIHEDRAL : 5.403 2865 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE AUTHOR USED ISOMORPHOUS REPLACEMENT REMARK 3 METHOD FOR THE STRUCTURE DETERMINATION REMARK 4 REMARK 4 5ZFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : AGILENT TITAN CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.0 CONTAINING 0.6 M REMARK 280 SODIUM ACETATE, 25% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.38600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.69300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.07900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 116 REMARK 465 PRO A 117 REMARK 465 ILE A 118 REMARK 465 PHE A 119 REMARK 465 PHE A 120 REMARK 465 ASP A 121 REMARK 465 TYR A 122 REMARK 465 GLU A 123 REMARK 465 PHE A 211 REMARK 465 ALA A 212 REMARK 465 ALA A 213 REMARK 465 ASN A 214 REMARK 465 PRO A 215 REMARK 465 PRO A 216 REMARK 465 ASP A 217 REMARK 465 LEU A 218 REMARK 465 THR A 219 REMARK 465 HIS A 220 REMARK 465 LEU A 221 REMARK 465 ASN A 222 REMARK 465 HIS A 223 REMARK 465 PRO A 224 REMARK 465 ILE A 225 REMARK 465 HIS A 226 REMARK 465 PRO A 227 REMARK 465 ILE A 228 REMARK 465 ARG A 229 REMARK 465 LYS A 230 REMARK 465 ILE A 231 REMARK 465 LYS A 232 REMARK 465 ASN A 233 REMARK 465 PRO B 117 REMARK 465 ILE B 118 REMARK 465 PHE B 119 REMARK 465 PHE B 120 REMARK 465 ASP B 121 REMARK 465 TYR B 122 REMARK 465 HIS B 210 REMARK 465 PHE B 211 REMARK 465 ALA B 212 REMARK 465 ALA B 213 REMARK 465 ASN B 214 REMARK 465 PRO B 215 REMARK 465 PRO B 216 REMARK 465 ASP B 217 REMARK 465 LEU B 218 REMARK 465 THR B 219 REMARK 465 HIS B 220 REMARK 465 LEU B 221 REMARK 465 ASN B 222 REMARK 465 HIS B 223 REMARK 465 PRO B 224 REMARK 465 ILE B 225 REMARK 465 HIS B 226 REMARK 465 PRO B 227 REMARK 465 ILE B 228 REMARK 465 ARG B 229 REMARK 465 LYS B 230 REMARK 465 ILE B 231 REMARK 465 LYS B 232 REMARK 465 ASN B 233 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 444 O HOH A 594 2.07 REMARK 500 O HOH B 551 O HOH B 616 2.12 REMARK 500 O HOH B 429 O HOH B 573 2.16 REMARK 500 O HOH B 552 O HOH B 593 2.19 REMARK 500 O HOH B 572 O HOH B 601 2.19 REMARK 500 OG1 THR B 181 O HOH B 401 2.19 REMARK 500 O HOH B 587 O HOH B 589 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 432 O HOH A 446 3655 2.08 REMARK 500 O HOH A 569 O HOH B 602 3655 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 66 107.32 66.43 REMARK 500 SER A 105 -62.04 -141.88 REMARK 500 SER A 105 -62.65 -141.54 REMARK 500 GLU B 66 106.11 66.28 REMARK 500 SER B 105 -59.06 -139.80 REMARK 500 SER B 105 -53.02 -143.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 636 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A 637 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 638 DISTANCE = 6.98 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 DBREF 5ZFG A 1 233 UNP A9XI30 A9XI30_BOMMO 1 233 DBREF 5ZFG B 1 233 UNP A9XI30 A9XI30_BOMMO 1 233 SEQRES 1 A 233 MET VAL LEU LYS LEU TYR ALA VAL SER ASP GLY PRO PRO SEQRES 2 A 233 SER LEU SER VAL ARG GLN ALA LEU VAL ALA LEU GLU VAL SEQRES 3 A 233 PRO PHE GLU LEU ILE ASN VAL ASP PHE GLY ALA GLY GLU SEQRES 4 A 233 HIS MET THR SER ASP TYR ALA LEU MET ASN PRO GLN LYS SEQRES 5 A 233 GLU ILE PRO VAL LEU ASP ASP GLU GLY PHE TYR LEU SER SEQRES 6 A 233 GLU SER ASN ALA ILE LEU GLN TYR ILE CYS ASP LYS TYR SEQRES 7 A 233 ARG PRO GLY SER PRO LEU TYR PRO GLN ASP PRO LYS SER SEQRES 8 A 233 ARG ALA ILE VAL ASN HIS ARG LEU CYS PHE ASN LEU SER SEQRES 9 A 233 SER TYR TYR ALA ASN ILE SER ALA TYR THR MET ALA PRO SEQRES 10 A 233 ILE PHE PHE ASP TYR GLU ARG THR PRO LEU GLY LEU LYS SEQRES 11 A 233 LYS VAL HIS ILE SER LEU ASP VAL LEU GLU THR TYR LEU SEQRES 12 A 233 THR ARG THR ASN THR SER TYR ALA ALA ALA ASN HIS LEU SEQRES 13 A 233 THR ILE ALA ASP PHE PRO LEU ILE ASN SER THR MET THR SEQRES 14 A 233 LEU GLU ALA ILE ASP PHE ASP PHE SER LYS TYR THR LYS SEQRES 15 A 233 ILE HIS LYS TRP TYR ASN ASP PHE LYS VAL LYS TYR PRO SEQRES 16 A 233 ASP LEU TRP LYS ILE SER GLU SER ALA MET LYS GLU ILE SEQRES 17 A 233 GLN HIS PHE ALA ALA ASN PRO PRO ASP LEU THR HIS LEU SEQRES 18 A 233 ASN HIS PRO ILE HIS PRO ILE ARG LYS ILE LYS ASN SEQRES 1 B 233 MET VAL LEU LYS LEU TYR ALA VAL SER ASP GLY PRO PRO SEQRES 2 B 233 SER LEU SER VAL ARG GLN ALA LEU VAL ALA LEU GLU VAL SEQRES 3 B 233 PRO PHE GLU LEU ILE ASN VAL ASP PHE GLY ALA GLY GLU SEQRES 4 B 233 HIS MET THR SER ASP TYR ALA LEU MET ASN PRO GLN LYS SEQRES 5 B 233 GLU ILE PRO VAL LEU ASP ASP GLU GLY PHE TYR LEU SER SEQRES 6 B 233 GLU SER ASN ALA ILE LEU GLN TYR ILE CYS ASP LYS TYR SEQRES 7 B 233 ARG PRO GLY SER PRO LEU TYR PRO GLN ASP PRO LYS SER SEQRES 8 B 233 ARG ALA ILE VAL ASN HIS ARG LEU CYS PHE ASN LEU SER SEQRES 9 B 233 SER TYR TYR ALA ASN ILE SER ALA TYR THR MET ALA PRO SEQRES 10 B 233 ILE PHE PHE ASP TYR GLU ARG THR PRO LEU GLY LEU LYS SEQRES 11 B 233 LYS VAL HIS ILE SER LEU ASP VAL LEU GLU THR TYR LEU SEQRES 12 B 233 THR ARG THR ASN THR SER TYR ALA ALA ALA ASN HIS LEU SEQRES 13 B 233 THR ILE ALA ASP PHE PRO LEU ILE ASN SER THR MET THR SEQRES 14 B 233 LEU GLU ALA ILE ASP PHE ASP PHE SER LYS TYR THR LYS SEQRES 15 B 233 ILE HIS LYS TRP TYR ASN ASP PHE LYS VAL LYS TYR PRO SEQRES 16 B 233 ASP LEU TRP LYS ILE SER GLU SER ALA MET LYS GLU ILE SEQRES 17 B 233 GLN HIS PHE ALA ALA ASN PRO PRO ASP LEU THR HIS LEU SEQRES 18 B 233 ASN HIS PRO ILE HIS PRO ILE ARG LYS ILE LYS ASN HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET ACT A 304 4 HET EDO B 301 4 HET ACT B 302 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 9 HOH *461(H2 O) HELIX 1 AA1 GLY A 11 LEU A 24 1 14 HELIX 2 AA2 GLY A 38 MET A 41 5 4 HELIX 3 AA3 THR A 42 ASN A 49 1 8 HELIX 4 AA4 GLU A 66 ARG A 79 1 14 HELIX 5 AA5 ASP A 88 SER A 105 1 18 HELIX 6 AA6 SER A 105 MET A 115 1 11 HELIX 7 AA7 THR A 125 ASN A 147 1 23 HELIX 8 AA8 ALA A 159 ILE A 173 1 15 HELIX 9 AA9 TYR A 180 TYR A 194 1 15 HELIX 10 AB1 TYR A 194 HIS A 210 1 17 HELIX 11 AB2 GLY B 11 LEU B 24 1 14 HELIX 12 AB3 GLY B 38 MET B 41 5 4 HELIX 13 AB4 THR B 42 ASN B 49 1 8 HELIX 14 AB5 GLU B 66 ARG B 79 1 14 HELIX 15 AB6 ASP B 88 SER B 105 1 18 HELIX 16 AB7 SER B 105 MET B 115 1 11 HELIX 17 AB8 THR B 125 ASN B 147 1 23 HELIX 18 AB9 ALA B 159 ILE B 173 1 15 HELIX 19 AC1 TYR B 180 TYR B 194 1 15 HELIX 20 AC2 TYR B 194 GLN B 209 1 16 SHEET 1 AA1 4 PHE A 28 ASN A 32 0 SHEET 2 AA1 4 LEU A 3 ALA A 7 1 N LEU A 3 O GLU A 29 SHEET 3 AA1 4 VAL A 56 ASP A 59 -1 O ASP A 58 N LYS A 4 SHEET 4 AA1 4 PHE A 62 SER A 65 -1 O LEU A 64 N LEU A 57 SHEET 1 AA2 4 GLU B 29 ASN B 32 0 SHEET 2 AA2 4 LEU B 3 ALA B 7 1 N LEU B 3 O GLU B 29 SHEET 3 AA2 4 VAL B 56 ASP B 59 -1 O ASP B 58 N LYS B 4 SHEET 4 AA2 4 PHE B 62 SER B 65 -1 O PHE B 62 N ASP B 59 CISPEP 1 ILE A 54 PRO A 55 0 8.59 CISPEP 2 ILE B 54 PRO B 55 0 6.27 SITE 1 AC1 8 ASN A 68 CYS A 100 LEU A 103 HOH A 471 SITE 2 AC1 8 ASN B 68 CYS B 100 LEU B 103 HOH B 492 SITE 1 AC2 4 HIS A 97 ARG A 98 HOH A 436 TYR B 63 SITE 1 AC3 8 ARG A 18 VAL A 22 PHE A 28 PHE A 35 SITE 2 AC3 8 GLY A 38 MET A 41 HOH A 446 HOH A 545 SITE 1 AC4 5 GLU A 66 SER A 67 HOH A 466 HOH A 485 SITE 2 AC4 5 HOH A 506 SITE 1 AC5 8 ARG B 18 VAL B 22 PHE B 28 PHE B 35 SITE 2 AC5 8 GLY B 38 MET B 41 HOH B 448 HOH B 538 SITE 1 AC6 5 GLU B 66 SER B 67 HOH B 460 HOH B 520 SITE 2 AC6 5 HOH B 536 CRYST1 86.249 86.249 58.772 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017015 0.00000