HEADER TRANSFERASE 06-MAR-18 5ZFK TITLE UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE FROM TITLE 2 SYNECHOCOCCUS SPECIES PCC 7942 - UDP-BH2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE:TETRAHYDROBIOPTERIN GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-355; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UDP-GLUCOSE:TETRAHYDROBIOPTERIN GLUCOSYLTRANSFERASE; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 2-354; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 3 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 4 ORGANISM_TAXID: 1140; SOURCE 5 STRAIN: PCC 7942; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 11 ORGANISM_COMMON: ANACYSTIS NIDULANS R2; SOURCE 12 ORGANISM_TAXID: 1140; SOURCE 13 STRAIN: PCC 7942; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TETRAHYDROBIOPTERIN, UDPGLUCOSE, PTERIDINE GLYCOSYLTRANSFERASE, KEYWDS 2 PTERIDINE GLYCOSIDES, SYNECHOCOCCUS., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KILLIVALAVAN,K.H.LEE REVDAT 3 23-OCT-24 5ZFK 1 REMARK REVDAT 2 22-NOV-23 5ZFK 1 REMARK REVDAT 1 06-MAR-19 5ZFK 0 JRNL AUTH A.KILLIVALAVAN,K.H.LEE JRNL TITL UDP GLUCOSE ALPHA TETRAHYDROBIOPTERIN GLYCOSYLTRANSFERASE JRNL TITL 2 FROM SYNECHOCOCCUS SPECIES PCC 7942 - APO FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 68206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4750 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5377 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 419 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.435 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5597 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5145 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7655 ; 2.039 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11908 ; 1.132 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 711 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;36.403 ;23.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;13.518 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 845 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6318 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1155 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2832 ; 2.497 ; 2.609 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2831 ; 2.496 ; 2.607 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3538 ; 3.444 ; 3.896 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3539 ; 3.444 ; 3.897 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2765 ; 3.678 ; 3.016 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2764 ; 3.679 ; 3.016 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4115 ; 5.396 ; 4.364 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6356 ; 6.637 ;31.992 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6276 ; 6.577 ;31.738 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZFK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300006939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979,0.979,0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, PEG3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.18500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.99200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.18500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.99200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 730 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 265 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 225 O HOH B 701 1.73 REMARK 500 O HOH A 694 O HOH A 726 1.91 REMARK 500 O HOH A 526 O HOH A 721 2.01 REMARK 500 O HOH A 506 O HOH A 721 2.09 REMARK 500 O HOH A 606 O HOH A 699 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 577 O HOH A 577 2656 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 282 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU A 282 CB - CG - CD1 ANGL. DEV. = -18.4 DEGREES REMARK 500 LEU A 282 CB - CG - CD2 ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 289 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 338 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 PHE B 8 CB - CG - CD1 ANGL. DEV. = 4.8 DEGREES REMARK 500 LEU B 45 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 MSE B 262 CG - SE - CE ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG B 329 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 335 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 335 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 -31.60 69.40 REMARK 500 PHE A 270 -81.24 -144.07 REMARK 500 LYS A 300 -56.75 -126.14 REMARK 500 ASP B 54 -12.95 85.27 REMARK 500 LYS B 300 -55.43 -129.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 270 GLY B 271 134.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HBI B 600 DBREF 5ZFK A 2 355 UNP Q93EY3 Q93EY3_SYNE7 2 355 DBREF 5ZFK B 2 354 UNP Q93EY3 Q93EY3_SYNE7 2 354 SEQRES 1 A 354 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 A 354 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 A 354 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 A 354 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 A 354 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 A 354 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 A 354 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 A 354 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 A 354 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 A 354 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 A 354 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 A 354 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 A 354 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 A 354 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 A 354 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 A 354 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 A 354 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 A 354 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 A 354 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 A 354 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 A 354 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 A 354 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 A 354 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 A 354 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 A 354 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 A 354 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 A 354 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 A 354 LEU SER ARG SEQRES 1 B 353 THR ALA HIS ARG PHE LEU PHE VAL SER THR PRO VAL GLY SEQRES 2 B 353 PRO LEU GLY SER GLY ARG GLY GLY GLY VAL GLU LEU THR SEQRES 3 B 353 LEU PRO ASN LEU ALA LYS ALA LEU THR GLN ARG GLY HIS SEQRES 4 B 353 GLN VAL SER VAL LEU ALA PRO ALA GLY SER VAL LEU PRO SEQRES 5 B 353 ASP LEU PRO LEU GLU THR VAL PRO GLY THR TRP GLN SER SEQRES 6 B 353 THR ALA GLN SER HIS GLY ARG ALA THR PRO ALA GLU ILE SEQRES 7 B 353 PRO ALA GLU SER VAL LEU ALA ARG LEU TRP ASP ARG ALA SEQRES 8 B 353 HIS GLN GLN GLN ALA ASP PHE ASP LEU ILE LEU ASN PHE SEQRES 9 B 353 ALA TYR ASP TRP LEU PRO LEU TYR LEU THR PRO PHE PHE SEQRES 10 B 353 LYS THR PRO VAL ALA HIS LEU ILE SER MSE GLY SER LEU SEQRES 11 B 353 SER GLU VAL MSE ASP GLN ALA ILE ALA THR SER LEU ASP SEQRES 12 B 353 ARG TYR PRO GLY SER ILE ALA VAL HIS SER LEU ALA GLN SEQRES 13 B 353 ALA ALA THR PHE PRO PHE GLY ASP ARG CYS LEU CYS ILE SEQRES 14 B 353 GLY ASN ALA LEU ASP LEU ALA ALA TYR GLY PHE ASN PRO SEQRES 15 B 353 GLU PRO GLU PRO VAL LEU GLY TRP VAL GLY ARG ILE ALA SEQRES 16 B 353 PRO GLU LYS GLY LEU GLU ASP ALA ILE GLN ALA ALA GLN SEQRES 17 B 353 GLN ALA GLY LEU PRO LEU ARG VAL TRP GLY ALA LEU THR SEQRES 18 B 353 GLU PRO ASP TYR TRP GLN ARG LEU GLN GLN GLN PHE GLY SEQRES 19 B 353 ASP ARG ALA VAL SER TYR GLN GLY PHE VAL SER THR ASP SEQRES 20 B 353 GLU LEU GLN ARG GLY LEU GLY ARG CYS GLN GLY LEU LEU SEQRES 21 B 353 MSE THR PRO LYS TRP VAL GLU ALA PHE GLY ASN VAL ALA SEQRES 22 B 353 ILE GLU ALA LEU ALA CYS GLY LEU PRO VAL ILE ALA TYR SEQRES 23 B 353 ALA ARG GLY GLY PRO LEU GLU ILE ILE GLU GLN GLY LYS SEQRES 24 B 353 SER GLY TRP LEU VAL GLU PRO ASP GLN GLN ALA ALA LEU SEQRES 25 B 353 VAL ASN ALA ILE GLY GLN LEU SER SER LEU ASP ARG ALA SEQRES 26 B 353 TYR CYS ARG ALA GLN ALA GLU ALA ARG PHE SER LEU ALA SEQRES 27 B 353 ALA MSE GLY GLN ARG LEU GLU ALA TRP LEU LEU PRO LEU SEQRES 28 B 353 LEU SER MODRES 5ZFK MSE A 128 MET MODIFIED RESIDUE MODRES 5ZFK MSE A 135 MET MODIFIED RESIDUE MODRES 5ZFK MSE A 262 MET MODIFIED RESIDUE MODRES 5ZFK MSE A 341 MET MODIFIED RESIDUE MODRES 5ZFK MSE B 128 MET MODIFIED RESIDUE MODRES 5ZFK MSE B 135 MET MODIFIED RESIDUE MODRES 5ZFK MSE B 262 MET MODIFIED RESIDUE MODRES 5ZFK MSE B 341 MET MODIFIED RESIDUE HET MSE A 128 8 HET MSE A 135 8 HET MSE A 262 8 HET MSE A 341 8 HET MSE B 128 8 HET MSE B 135 8 HET MSE B 262 8 HET MSE B 341 8 HET UDP A 401 25 HET HBI A 402 17 HET HBI B 600 17 HETNAM MSE SELENOMETHIONINE HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM HBI 7,8-DIHYDROBIOPTERIN FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 UDP C9 H14 N2 O12 P2 FORMUL 4 HBI 2(C9 H13 N5 O3) FORMUL 6 HOH *419(H2 O) HELIX 1 AA1 GLY A 23 GLN A 37 1 15 HELIX 2 AA2 THR A 67 HIS A 71 5 5 HELIX 3 AA3 SER A 83 GLN A 95 1 13 HELIX 4 AA4 GLN A 96 PHE A 99 5 4 HELIX 5 AA5 ASP A 108 THR A 115 1 8 HELIX 6 AA6 PRO A 116 PHE A 118 5 3 HELIX 7 AA7 SER A 132 TYR A 146 1 15 HELIX 8 AA8 SER A 154 THR A 160 1 7 HELIX 9 AA9 PHE A 163 CYS A 167 5 5 HELIX 10 AB1 ASP A 175 TYR A 179 5 5 HELIX 11 AB2 ALA A 196 LYS A 199 5 4 HELIX 12 AB3 GLY A 200 GLY A 212 1 13 HELIX 13 AB4 GLU A 223 GLY A 235 1 13 HELIX 14 AB5 SER A 246 ARG A 256 1 11 HELIX 15 AB6 GLY A 271 CYS A 280 1 10 HELIX 16 AB7 GLY A 290 ILE A 295 5 6 HELIX 17 AB8 GLN A 309 GLN A 319 1 11 HELIX 18 AB9 ASP A 324 PHE A 336 1 13 HELIX 19 AC1 SER A 337 SER A 354 1 18 HELIX 20 AC2 GLY B 23 GLN B 37 1 15 HELIX 21 AC3 THR B 67 HIS B 71 5 5 HELIX 22 AC4 SER B 83 GLN B 95 1 13 HELIX 23 AC5 GLN B 96 PHE B 99 5 4 HELIX 24 AC6 ASP B 108 THR B 115 1 8 HELIX 25 AC7 PRO B 116 PHE B 118 5 3 HELIX 26 AC8 SER B 132 TYR B 146 1 15 HELIX 27 AC9 SER B 154 THR B 160 1 7 HELIX 28 AD1 PHE B 163 CYS B 167 5 5 HELIX 29 AD2 ASP B 175 TYR B 179 5 5 HELIX 30 AD3 GLY B 200 GLY B 212 1 13 HELIX 31 AD4 GLU B 223 GLY B 235 1 13 HELIX 32 AD5 SER B 246 GLY B 255 1 10 HELIX 33 AD6 LYS B 265 ALA B 269 5 5 HELIX 34 AD7 GLY B 271 CYS B 280 1 10 HELIX 35 AD8 GLY B 291 ILE B 296 1 6 HELIX 36 AD9 GLN B 309 GLY B 318 1 10 HELIX 37 AE1 GLN B 319 LEU B 323 5 5 HELIX 38 AE2 ASP B 324 SER B 337 1 14 HELIX 39 AE3 SER B 337 LEU B 350 1 14 HELIX 40 AE4 PRO B 351 LEU B 353 5 3 SHEET 1 AA1 7 LEU A 57 VAL A 60 0 SHEET 2 AA1 7 GLN A 41 PRO A 47 1 N VAL A 44 O GLU A 58 SHEET 3 AA1 7 ARG A 5 VAL A 9 1 N PHE A 8 O LEU A 45 SHEET 4 AA1 7 LEU A 101 ASN A 104 1 O LEU A 103 N VAL A 9 SHEET 5 AA1 7 VAL A 122 LEU A 125 1 O ALA A 123 N ASN A 104 SHEET 6 AA1 7 ILE A 150 VAL A 152 1 O ALA A 151 N HIS A 124 SHEET 7 AA1 7 LEU A 168 CYS A 169 1 O LEU A 168 N VAL A 152 SHEET 1 AA2 6 SER A 240 TYR A 241 0 SHEET 2 AA2 6 LEU A 215 TRP A 218 1 N LEU A 215 O SER A 240 SHEET 3 AA2 6 LEU A 189 VAL A 192 1 N LEU A 189 O ARG A 216 SHEET 4 AA2 6 GLY A 259 MSE A 262 1 O GLY A 259 N GLY A 190 SHEET 5 AA2 6 VAL A 284 TYR A 287 1 O ILE A 285 N LEU A 260 SHEET 6 AA2 6 GLY A 302 VAL A 305 1 O TRP A 303 N ALA A 286 SHEET 1 AA3 7 LEU B 57 VAL B 60 0 SHEET 2 AA3 7 GLN B 41 PRO B 47 1 N VAL B 44 O GLU B 58 SHEET 3 AA3 7 ARG B 5 VAL B 9 1 N PHE B 8 O SER B 43 SHEET 4 AA3 7 LEU B 101 ASN B 104 1 O LEU B 103 N LEU B 7 SHEET 5 AA3 7 VAL B 122 LEU B 125 1 O ALA B 123 N ASN B 104 SHEET 6 AA3 7 ILE B 150 VAL B 152 1 O ALA B 151 N HIS B 124 SHEET 7 AA3 7 LEU B 168 CYS B 169 1 O LEU B 168 N VAL B 152 SHEET 1 AA4 6 VAL B 239 GLY B 243 0 SHEET 2 AA4 6 LEU B 215 TRP B 218 1 N VAL B 217 O GLN B 242 SHEET 3 AA4 6 LEU B 189 VAL B 192 1 N LEU B 189 O ARG B 216 SHEET 4 AA4 6 GLY B 259 MSE B 262 1 O LEU B 261 N GLY B 190 SHEET 5 AA4 6 VAL B 284 TYR B 287 1 O ILE B 285 N LEU B 260 SHEET 6 AA4 6 GLY B 302 VAL B 305 1 O VAL B 305 N ALA B 286 LINK C SER A 127 N MSE A 128 1555 1555 1.32 LINK C MSE A 128 N GLY A 129 1555 1555 1.32 LINK C VAL A 134 N MSE A 135 1555 1555 1.34 LINK C MSE A 135 N ASP A 136 1555 1555 1.33 LINK C LEU A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N THR A 263 1555 1555 1.33 LINK C ALA A 340 N MSE A 341 1555 1555 1.34 LINK C MSE A 341 N GLY A 342 1555 1555 1.33 LINK C SER B 127 N MSE B 128 1555 1555 1.34 LINK C MSE B 128 N GLY B 129 1555 1555 1.34 LINK C VAL B 134 N MSE B 135 1555 1555 1.35 LINK C MSE B 135 N ASP B 136 1555 1555 1.33 LINK C LEU B 261 N MSE B 262 1555 1555 1.33 LINK C MSE B 262 N THR B 263 1555 1555 1.32 LINK C ALA B 340 N MSE B 341 1555 1555 1.33 LINK C MSE B 341 N GLY B 342 1555 1555 1.33 SITE 1 AC1 22 GLY A 22 GLY A 23 LEU A 26 VAL A 192 SITE 2 AC1 22 ARG A 194 LYS A 199 TRP A 218 PHE A 244 SITE 3 AC1 22 VAL A 245 TRP A 266 GLU A 268 ASN A 272 SITE 4 AC1 22 VAL A 273 GLU A 276 HBI A 402 HOH A 526 SITE 5 AC1 22 HOH A 531 HOH A 568 HOH A 620 HOH A 696 SITE 6 AC1 22 HOH A 699 HOH A 702 SITE 1 AC2 15 THR A 11 VAL A 13 GLY A 21 GLY A 23 SITE 2 AC2 15 SER A 66 THR A 67 ALA A 68 GLN A 69 SITE 3 AC2 15 ALA A 106 TYR A 107 ASP A 108 MSE A 128 SITE 4 AC2 15 ARG A 194 UDP A 401 HOH A 563 SITE 1 AC3 17 THR B 11 VAL B 13 GLY B 21 GLY B 22 SITE 2 AC3 17 GLY B 23 VAL B 24 SER B 66 THR B 67 SITE 3 AC3 17 ALA B 68 GLN B 69 ALA B 106 TYR B 107 SITE 4 AC3 17 ASP B 108 SER B 127 MSE B 128 HOH B 734 SITE 5 AC3 17 HOH B 760 CRYST1 168.370 79.984 53.827 90.00 90.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005939 0.000000 0.000100 0.00000 SCALE2 0.000000 0.012503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018581 0.00000