data_5ZGL # _entry.id 5ZGL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5ZGL pdb_00005zgl 10.2210/pdb5zgl/pdb WWPDB D_1300007034 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-03 2 'Structure model' 1 1 2019-10-16 3 'Structure model' 1 2 2020-03-04 4 'Structure model' 1 3 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' reflns_shell 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_reflns_shell.percent_possible_all' 13 4 'Structure model' '_database_2.pdbx_DOI' 14 4 'Structure model' '_database_2.pdbx_database_accession' 15 4 'Structure model' '_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5ZGL _pdbx_database_status.recvd_initial_deposition_date 2018-03-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xie, M.' 1 ? 'Luo, F.' 2 ? 'Gui, X.' 3 ? 'Zhao, M.' 4 ? 'He, J.' 5 ? 'Li, D.' 6 ? 'Liu, C.' 7 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 2006 _citation.page_last 2006 _citation.title 'Structural basis for reversible amyloids of hnRNPA1 elucidates their role in stress granule assembly.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-09902-7 _citation.pdbx_database_id_PubMed 31043593 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gui, X.' 1 ? primary 'Luo, F.' 2 ? primary 'Li, Y.' 3 ? primary 'Zhou, H.' 4 0000-0002-6267-1585 primary 'Qin, Z.' 5 0000-0002-2731-5622 primary 'Liu, Z.' 6 ? primary 'Gu, J.' 7 ? primary 'Xie, M.' 8 ? primary 'Zhao, K.' 9 ? primary 'Dai, B.' 10 ? primary 'Shin, W.S.' 11 ? primary 'He, J.' 12 ? primary 'He, L.' 13 ? primary 'Jiang, L.' 14 0000-0003-3039-1877 primary 'Zhao, M.' 15 ? primary 'Sun, B.' 16 0000-0002-4590-7795 primary 'Li, X.' 17 0000-0002-8451-9947 primary 'Liu, C.' 18 0000-0003-3425-6672 primary 'Li, D.' 19 0000-0002-1609-1539 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn '7-mer peptide from Heterogeneous nuclear ribonucleoprotein A1' 553.526 2 ? ? ? ? 2 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hnRNP A1,Helix-destabilizing protein,Single-strand RNA-binding protein,hnRNP core protein A1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGYGGS _entity_poly.pdbx_seq_one_letter_code_can GGGYGGS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 GLY n 1 4 TYR n 1 5 GLY n 1 6 GLY n 1 7 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 7 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 234 234 GLY GLY A . n A 1 2 GLY 2 235 235 GLY GLY A . n A 1 3 GLY 3 236 236 GLY GLY A . n A 1 4 TYR 4 237 237 TYR TYR A . n A 1 5 GLY 5 238 238 GLY GLY A . n A 1 6 GLY 6 239 239 GLY GLY A . n A 1 7 SER 7 240 240 SER SER A . n B 1 1 GLY 1 234 234 GLY GLY B . n B 1 2 GLY 2 235 235 GLY GLY B . n B 1 3 GLY 3 236 236 GLY GLY B . n B 1 4 TYR 4 237 237 TYR TYR B . n B 1 5 GLY 5 238 238 GLY GLY B . n B 1 6 GLY 6 239 239 GLY GLY B . n B 1 7 SER 7 240 240 SER SER B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 301 1 HOH HOH A . C 2 HOH 2 302 3 HOH HOH A . C 2 HOH 3 303 2 HOH HOH A . D 2 HOH 1 301 4 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXD ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SHELXT ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? SHELXL ? ? ? . 6 # _cell.length_a 11.957 _cell.length_b 10.141 _cell.length_c 21.372 _cell.angle_alpha 90.000 _cell.angle_beta 100.110 _cell.angle_gamma 90.000 _cell.entry_id 5ZGL _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 5ZGL _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5ZGL _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 30% PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9791 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9791 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.entry_id 5ZGL _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 11.771 _reflns.d_resolution_high 0.9500 _reflns.number_obs 5179 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.590 _reflns.B_iso_Wilson_estimate 6.903 _reflns.pdbx_redundancy 3.267 _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_CC_half ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_chi_squared ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.details ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 0.950 0.980 ? 6.640 ? ? ? ? 178 36.200 ? ? ? ? 0.179 ? ? ? ? ? ? ? ? 3.017 ? ? ? ? 0.218 ? ? 1 1 0.962 ? ? 0.980 1.000 ? 8.630 ? ? ? ? 206 46.400 ? ? ? ? 0.115 ? ? ? ? ? ? ? ? 3.189 ? ? ? ? 0.139 ? ? 2 1 0.984 ? ? 1.000 1.030 ? 8.480 ? ? ? ? 356 81.100 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 3.272 ? ? ? ? 0.147 ? ? 3 1 0.991 ? ? 1.030 1.060 ? 9.460 ? ? ? ? 359 84.900 ? ? ? ? 0.109 ? ? ? ? ? ? ? ? 3.304 ? ? ? ? 0.130 ? ? 4 1 0.990 ? ? 1.060 1.100 ? 10.240 ? ? ? ? 339 85.400 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 3.416 ? ? ? ? 0.111 ? ? 5 1 0.995 ? ? 1.100 1.140 ? 12.720 ? ? ? ? 376 88.700 ? ? ? ? 0.074 ? ? ? ? ? ? ? ? 3.367 ? ? ? ? 0.088 ? ? 6 1 0.994 ? ? 1.140 1.180 ? 12.760 ? ? ? ? 352 91.200 ? ? ? ? 0.070 ? ? ? ? ? ? ? ? 3.366 ? ? ? ? 0.083 ? ? 7 1 0.997 ? ? 1.180 1.230 ? 12.850 ? ? ? ? 316 91.300 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 3.304 ? ? ? ? 0.091 ? ? 8 1 0.998 ? ? 1.230 1.280 ? 14.060 ? ? ? ? 320 89.100 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.388 ? ? ? ? 0.086 ? ? 9 1 0.993 ? ? 1.280 1.350 ? 13.700 ? ? ? ? 298 89.500 ? ? ? ? 0.079 ? ? ? ? ? ? ? ? 3.315 ? ? ? ? 0.094 ? ? 10 1 0.987 ? ? 1.350 1.420 ? 14.150 ? ? ? ? 316 97.800 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 3.244 ? ? ? ? 0.086 ? ? 11 1 0.988 ? ? 1.420 1.500 ? 15.710 ? ? ? ? 270 87.700 ? ? ? ? 0.064 ? ? ? ? ? ? ? ? 3.256 ? ? ? ? 0.076 ? ? 12 1 0.992 ? ? 1.500 1.610 ? 16.680 ? ? ? ? 277 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 3.249 ? ? ? ? 0.074 ? ? 13 1 0.992 ? ? 1.610 1.740 ? 17.070 ? ? ? ? 260 90.900 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 3.192 ? ? ? ? 0.072 ? ? 14 1 0.994 ? ? 1.740 1.900 ? 18.260 ? ? ? ? 226 98.700 ? ? ? ? 0.056 ? ? ? ? ? ? ? ? 3.310 ? ? ? ? 0.067 ? ? 15 1 0.994 ? ? 1.900 2.130 ? 18.430 ? ? ? ? 209 93.300 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 3.158 ? ? ? ? 0.069 ? ? 16 1 0.991 ? ? 2.130 2.460 ? 18.840 ? ? ? ? 194 96.500 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 3.077 ? ? ? ? 0.066 ? ? 17 1 0.992 ? ? 2.460 3.010 ? 19.140 ? ? ? ? 160 98.200 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 3.106 ? ? ? ? 0.066 ? ? 18 1 0.994 ? ? 3.010 4.250 ? 18.750 ? ? ? ? 112 88.200 ? ? ? ? 0.059 ? ? ? ? ? ? ? ? 3.036 ? ? ? ? 0.073 ? ? 19 1 0.992 ? ? 4.250 11.774 ? 19.240 ? ? ? ? 55 78.600 ? ? ? ? 0.054 ? ? ? ? ? ? ? ? 3.145 ? ? ? ? 0.064 ? ? 20 1 0.997 ? ? # _refine.entry_id 5ZGL _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 0.9500 _refine.ls_d_res_low 11.7710 _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 82.4700 _refine.ls_number_reflns_obs 5160 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1020 _refine.ls_R_factor_R_work 0.0998 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1211 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 10.0400 _refine.ls_number_reflns_R_free 518 _refine.ls_number_reflns_R_work 4642 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 7.4997 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.0800 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 44.260 _refine.B_iso_min 3.510 _refine.pdbx_overall_phase_error 14.0600 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 0.9500 _refine_hist.d_res_low 11.7710 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 82 _refine_hist.pdbx_number_residues_total 14 _refine_hist.pdbx_B_iso_mean_solvent 30.63 _refine_hist.pdbx_number_atoms_protein 78 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 78 0.012 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 100 1.193 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 4 0.095 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 16 0.014 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 22 15.127 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_obs 0.9500 1.0456 4 58.0000 825 . 0.1285 0.1871 . 90 0.0000 915 . 'X-RAY DIFFRACTION' . 1.0456 1.1967 4 87.0000 1206 . 0.0953 0.1170 . 134 0.0000 1340 . 'X-RAY DIFFRACTION' . 1.1967 1.5073 4 91.0000 1281 . 0.0947 0.0998 . 143 0.0000 1424 . 'X-RAY DIFFRACTION' . 1.5073 11.7722 4 95.0000 1330 . 0.0992 0.1237 . 151 0.0000 1481 . 'X-RAY DIFFRACTION' . # _struct.entry_id 5ZGL _struct.title 'hnRNP A1 segment GGGYGGS (residues 234-240)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5ZGL _struct_keywords.text 'phase separation; reversibility, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ROA1_HUMAN _struct_ref.pdbx_db_accession P09651 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGGYGGS _struct_ref.pdbx_align_begin 234 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5ZGL A 1 ? 7 ? P09651 234 ? 240 ? 234 240 2 1 5ZGL B 1 ? 7 ? P09651 234 ? 240 ? 234 240 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLY _pdbx_validate_symm_contact.auth_seq_id_1 234 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 SER _pdbx_validate_symm_contact.auth_seq_id_2 240 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_654 _pdbx_validate_symm_contact.dist 1.87 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLY N N N N 1 GLY CA C N N 2 GLY C C N N 3 GLY O O N N 4 GLY OXT O N N 5 GLY H H N N 6 GLY H2 H N N 7 GLY HA2 H N N 8 GLY HA3 H N N 9 GLY HXT H N N 10 HOH O O N N 11 HOH H1 H N N 12 HOH H2 H N N 13 SER N N N N 14 SER CA C N S 15 SER C C N N 16 SER O O N N 17 SER CB C N N 18 SER OG O N N 19 SER OXT O N N 20 SER H H N N 21 SER H2 H N N 22 SER HA H N N 23 SER HB2 H N N 24 SER HB3 H N N 25 SER HG H N N 26 SER HXT H N N 27 TYR N N N N 28 TYR CA C N S 29 TYR C C N N 30 TYR O O N N 31 TYR CB C N N 32 TYR CG C Y N 33 TYR CD1 C Y N 34 TYR CD2 C Y N 35 TYR CE1 C Y N 36 TYR CE2 C Y N 37 TYR CZ C Y N 38 TYR OH O N N 39 TYR OXT O N N 40 TYR H H N N 41 TYR H2 H N N 42 TYR HA H N N 43 TYR HB2 H N N 44 TYR HB3 H N N 45 TYR HD1 H N N 46 TYR HD2 H N N 47 TYR HE1 H N N 48 TYR HE2 H N N 49 TYR HH H N N 50 TYR HXT H N N 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLY N CA sing N N 1 GLY N H sing N N 2 GLY N H2 sing N N 3 GLY CA C sing N N 4 GLY CA HA2 sing N N 5 GLY CA HA3 sing N N 6 GLY C O doub N N 7 GLY C OXT sing N N 8 GLY OXT HXT sing N N 9 HOH O H1 sing N N 10 HOH O H2 sing N N 11 SER N CA sing N N 12 SER N H sing N N 13 SER N H2 sing N N 14 SER CA C sing N N 15 SER CA CB sing N N 16 SER CA HA sing N N 17 SER C O doub N N 18 SER C OXT sing N N 19 SER CB OG sing N N 20 SER CB HB2 sing N N 21 SER CB HB3 sing N N 22 SER OG HG sing N N 23 SER OXT HXT sing N N 24 TYR N CA sing N N 25 TYR N H sing N N 26 TYR N H2 sing N N 27 TYR CA C sing N N 28 TYR CA CB sing N N 29 TYR CA HA sing N N 30 TYR C O doub N N 31 TYR C OXT sing N N 32 TYR CB CG sing N N 33 TYR CB HB2 sing N N 34 TYR CB HB3 sing N N 35 TYR CG CD1 doub Y N 36 TYR CG CD2 sing Y N 37 TYR CD1 CE1 sing Y N 38 TYR CD1 HD1 sing N N 39 TYR CD2 CE2 doub Y N 40 TYR CD2 HD2 sing N N 41 TYR CE1 CZ doub Y N 42 TYR CE1 HE1 sing N N 43 TYR CE2 CZ sing Y N 44 TYR CE2 HE2 sing N N 45 TYR CZ OH sing N N 46 TYR OH HH sing N N 47 TYR OXT HXT sing N N 48 # _atom_sites.entry_id 5ZGL _atom_sites.fract_transf_matrix[1][1] 0.083633 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.014915 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.098610 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.047528 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H N O # loop_