HEADER DNA BINDING PROTEIN 13-MAR-18 5ZHV TITLE CRYSTAL STRUCTURE OF THE PADR-FAMILY TRANSCRIPTIONAL REGULATOR RV3488 TITLE 2 OF MYCOBACTERIUM TUBERCULOSIS H37RV IN COMPLEX WITH ZINC ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV3488; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.MEERA,R.K.PAL,A.ARORA,B.K.BISWAL REVDAT 3 22-NOV-23 5ZHV 1 LINK REVDAT 2 01-MAY-19 5ZHV 1 JRNL REVDAT 1 17-OCT-18 5ZHV 0 JRNL AUTH M.KUMARI,R.K.PAL,A.K.MISHRA,S.TRIPATHI,B.K.BISWAL, JRNL AUTH 2 K.K.SRIVASTAVA,A.ARORA JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR RV3488 OFMYCOBACTERIUM JRNL TITL 3 TUBERCULOSISH37RV. JRNL REF BIOCHEM. J. V. 475 3393 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30266832 JRNL DOI 10.1042/BCJ20180356 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 7621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 520 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.5350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.17000 REMARK 3 B22 (A**2) : 1.45000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.673 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.243 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.944 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1647 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2230 ; 1.407 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 5.502 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;27.332 ;21.059 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;16.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.385 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 245 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1282 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 814 ; 1.213 ; 2.990 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1014 ; 2.090 ; 4.478 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 833 ; 1.456 ; 3.222 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2404 ; 5.624 ;40.814 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -5 96 B -5 96 6036 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6156 1.8959 -18.0319 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0383 REMARK 3 T33: 0.0876 T12: -0.0250 REMARK 3 T13: 0.0436 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 0.1334 L22: 0.3329 REMARK 3 L33: 3.5811 L12: -0.0076 REMARK 3 L13: -0.3886 L23: -0.5896 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0538 S13: -0.0971 REMARK 3 S21: 0.0431 S22: -0.0678 S23: 0.0377 REMARK 3 S31: -0.2796 S32: -0.0025 S33: 0.0912 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -5 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2897 0.8146 8.4825 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0596 REMARK 3 T33: 0.0627 T12: 0.0220 REMARK 3 T13: 0.0170 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 0.3286 REMARK 3 L33: 2.4343 L12: -0.1646 REMARK 3 L13: -0.6639 L23: 0.6618 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0296 S13: -0.0353 REMARK 3 S21: -0.0197 S22: 0.0457 S23: -0.0235 REMARK 3 S31: -0.1538 S32: 0.0004 S33: -0.0464 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5ZHV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8086 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 64.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.0 M SODIUM REMARK 280 FORMATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.23400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.60400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.23400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.60400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 GLN A 99 REMARK 465 SER A 100 REMARK 465 HIS A 101 REMARK 465 THR A 102 REMARK 465 ALA A 103 REMARK 465 GLY A 104 REMARK 465 ASN A 105 REMARK 465 GLY A 106 REMARK 465 THR A 107 REMARK 465 GLY B 97 REMARK 465 GLY B 98 REMARK 465 GLN B 99 REMARK 465 SER B 100 REMARK 465 HIS B 101 REMARK 465 THR B 102 REMARK 465 ALA B 103 REMARK 465 GLY B 104 REMARK 465 ASN B 105 REMARK 465 GLY B 106 REMARK 465 THR B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 ARG A 6 CZ NH1 NH2 REMARK 470 ARG A 37 CD NE CZ NH1 NH2 REMARK 470 GLN A 60 CG CD OE1 NE2 REMARK 470 ARG A 86 CZ NH1 NH2 REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 GLU B -1 OE1 REMARK 470 ARG B 37 CZ NH1 NH2 REMARK 470 LEU B 96 CG CD1 CD2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 12 NE2 REMARK 620 2 HIS A 34 ND1 93.6 REMARK 620 3 GLU B 94 OE1 72.0 79.7 REMARK 620 4 GLU B 94 OE2 84.5 135.8 57.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 NE2 REMARK 620 2 GLU A 30 OE1 95.4 REMARK 620 3 HIS A 34 NE2 93.9 86.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 16 NE2 REMARK 620 2 GLU B 30 OE2 101.8 REMARK 620 3 HIS B 34 NE2 111.3 109.9 REMARK 620 4 HOH B 317 O 107.0 120.5 106.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 5ZHV A 1 107 UNP I6X7F9 I6X7F9_MYCTU 1 107 DBREF 5ZHV B 1 107 UNP I6X7F9 I6X7F9_MYCTU 1 107 SEQADV 5ZHV ALA A -5 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV MET A -4 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV ASP A -3 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV PRO A -2 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV GLU A -1 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV PHE A 0 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV ALA B -5 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV MET B -4 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV ASP B -3 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV PRO B -2 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV GLU B -1 UNP I6X7F9 EXPRESSION TAG SEQADV 5ZHV PHE B 0 UNP I6X7F9 EXPRESSION TAG SEQRES 1 A 113 ALA MET ASP PRO GLU PHE MET ARG GLU PHE GLN ARG ALA SEQRES 2 A 113 ALA VAL ARG LEU HIS ILE LEU HIS HIS ALA ALA ASP ASN SEQRES 3 A 113 GLU VAL HIS GLY ALA TRP LEU THR GLN GLU LEU SER ARG SEQRES 4 A 113 HIS GLY TYR ARG VAL SER PRO GLY THR LEU TYR PRO THR SEQRES 5 A 113 LEU HIS ARG LEU GLU ALA ASP GLY LEU LEU VAL SER GLU SEQRES 6 A 113 GLN ARG VAL VAL ASP GLY ARG ALA ARG ARG VAL TYR ARG SEQRES 7 A 113 ALA THR PRO ALA GLY ARG ALA ALA LEU THR GLU ASP ARG SEQRES 8 A 113 ARG ALA LEU GLU GLU LEU ALA ARG GLU VAL LEU GLY GLY SEQRES 9 A 113 GLN SER HIS THR ALA GLY ASN GLY THR SEQRES 1 B 113 ALA MET ASP PRO GLU PHE MET ARG GLU PHE GLN ARG ALA SEQRES 2 B 113 ALA VAL ARG LEU HIS ILE LEU HIS HIS ALA ALA ASP ASN SEQRES 3 B 113 GLU VAL HIS GLY ALA TRP LEU THR GLN GLU LEU SER ARG SEQRES 4 B 113 HIS GLY TYR ARG VAL SER PRO GLY THR LEU TYR PRO THR SEQRES 5 B 113 LEU HIS ARG LEU GLU ALA ASP GLY LEU LEU VAL SER GLU SEQRES 6 B 113 GLN ARG VAL VAL ASP GLY ARG ALA ARG ARG VAL TYR ARG SEQRES 7 B 113 ALA THR PRO ALA GLY ARG ALA ALA LEU THR GLU ASP ARG SEQRES 8 B 113 ARG ALA LEU GLU GLU LEU ALA ARG GLU VAL LEU GLY GLY SEQRES 9 B 113 GLN SER HIS THR ALA GLY ASN GLY THR HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *43(H2 O) HELIX 1 AA1 ASP A -3 ASN A 20 1 24 HELIX 2 AA2 HIS A 23 HIS A 34 1 12 HELIX 3 AA3 SER A 39 ASP A 53 1 15 HELIX 4 AA4 THR A 74 LEU A 96 1 23 HELIX 5 AA5 ASP B -3 ASN B 20 1 24 HELIX 6 AA6 HIS B 23 HIS B 34 1 12 HELIX 7 AA7 SER B 39 ASP B 53 1 15 HELIX 8 AA8 THR B 74 LEU B 96 1 23 SHEET 1 AA1 2 LEU A 56 VAL A 63 0 SHEET 2 AA1 2 ARG A 66 ALA A 73 -1 O ARG A 68 N ARG A 61 SHEET 1 AA2 2 LEU B 56 VAL B 63 0 SHEET 2 AA2 2 ARG B 66 ALA B 73 -1 O ARG B 68 N ARG B 61 LINK NE2 HIS A 12 ZN ZN A 202 1555 1555 2.48 LINK ND1 HIS A 15 ZN ZN A 203 1555 1555 2.02 LINK NE2 HIS A 16 ZN ZN A 201 1555 1555 2.29 LINK OE1 GLU A 30 ZN ZN A 201 1555 1555 2.44 LINK NE2 HIS A 34 ZN ZN A 201 1555 1555 2.38 LINK ND1 HIS A 34 ZN ZN A 202 1555 1555 2.68 LINK ZN ZN A 202 OE1 GLU B 94 1555 1555 1.96 LINK ZN ZN A 202 OE2 GLU B 94 1555 1555 2.47 LINK NE2 HIS B 16 ZN ZN B 201 1555 1555 2.11 LINK OE2 GLU B 30 ZN ZN B 201 1555 1555 1.90 LINK NE2 HIS B 34 ZN ZN B 201 1555 1555 1.98 LINK ZN ZN B 201 O HOH B 317 1555 1555 2.11 SITE 1 AC1 3 HIS A 16 GLU A 30 HIS A 34 SITE 1 AC2 3 HIS A 12 HIS A 34 GLU B 94 SITE 1 AC3 2 HIS A 15 VAL B 95 SITE 1 AC4 4 HIS B 16 GLU B 30 HIS B 34 HOH B 317 CRYST1 30.468 49.208 128.388 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007789 0.00000