HEADER OXIDOREDUCTASE 14-MAR-18 5ZI4 TITLE MDH3 WILD TYPE, NAD-OAA-FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MDH3, SCKG_0552; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MALATE DEHYDROGENASE, GLYOXYSOME, FATTY ACID OXIDATION, MDH3, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MORIYAMA,K.NISHIO,T.MIZUSHIMA REVDAT 2 22-NOV-23 5ZI4 1 REMARK REVDAT 1 24-OCT-18 5ZI4 0 JRNL AUTH S.MORIYAMA,K.NISHIO,T.MIZUSHIMA JRNL TITL STRUCTURE OF GLYOXYSOMAL MALATE DEHYDROGENASE (MDH3) FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 74 617 2018 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 30279312 JRNL DOI 10.1107/S2053230X18011895 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.590 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5356 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5352 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7245 ; 1.910 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12354 ; 1.060 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;38.793 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 979 ;17.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 855 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5913 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1107 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2706 ; 3.208 ; 3.812 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2705 ; 3.201 ; 3.811 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3379 ; 4.549 ; 5.702 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3380 ; 4.552 ; 5.703 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2650 ; 3.554 ; 4.230 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2651 ; 3.554 ; 4.229 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3867 ; 5.300 ; 6.160 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6031 ; 7.017 ;30.237 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6032 ; 7.017 ;30.236 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5ZI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-18. REMARK 100 THE DEPOSITION ID IS D_1300007054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 10000, 0.1M HEPES PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.60900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.52500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.32900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.52500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.60900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.32900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 340 REMARK 465 SER A 341 REMARK 465 LYS A 342 REMARK 465 LEU A 343 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASP B 339 REMARK 465 SER B 340 REMARK 465 SER B 341 REMARK 465 LYS B 342 REMARK 465 LEU B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 81 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 159 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 174 -36.65 -39.31 REMARK 500 ASP A 198 85.26 59.54 REMARK 500 ASP A 206 -119.35 43.24 REMARK 500 THR A 234 -60.17 -128.34 REMARK 500 ASN A 254 39.46 35.77 REMARK 500 ASP A 283 103.61 -162.97 REMARK 500 ALA B 37 -1.21 72.26 REMARK 500 ALA B 108 63.88 -155.85 REMARK 500 ASN B 165 71.05 -177.16 REMARK 500 ASP B 206 -124.86 62.31 REMARK 500 THR B 234 -68.22 -132.34 REMARK 500 ASN B 254 61.89 35.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 164 ASN B 165 -146.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OAA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 402 DBREF1 5ZI4 A 1 343 UNP A0A250W9L1_YEASX DBREF2 5ZI4 A A0A250W9L1 1 343 DBREF1 5ZI4 B 1 343 UNP A0A250W9L1_YEASX DBREF2 5ZI4 B A0A250W9L1 1 343 SEQADV 5ZI4 GLY A -1 UNP A0A250W9L EXPRESSION TAG SEQADV 5ZI4 SER A 0 UNP A0A250W9L EXPRESSION TAG SEQADV 5ZI4 GLY B -1 UNP A0A250W9L EXPRESSION TAG SEQADV 5ZI4 SER B 0 UNP A0A250W9L EXPRESSION TAG SEQRES 1 A 345 GLY SER MET VAL LYS VAL ALA ILE LEU GLY ALA SER GLY SEQRES 2 A 345 GLY VAL GLY GLN PRO LEU SER LEU LEU LEU LYS LEU SER SEQRES 3 A 345 PRO TYR VAL SER GLU LEU ALA LEU TYR ASP ILE ARG ALA SEQRES 4 A 345 ALA GLU GLY ILE GLY LYS ASP LEU SER HIS ILE ASN THR SEQRES 5 A 345 ASN SER SER CYS VAL GLY TYR ASP LYS ASP SER ILE GLU SEQRES 6 A 345 ASN THR LEU SER ASN ALA GLN VAL VAL LEU ILE PRO ALA SEQRES 7 A 345 GLY VAL PRO ARG LYS PRO GLY LEU THR ARG ASP ASP LEU SEQRES 8 A 345 PHE LYS MET ASN ALA GLY ILE VAL LYS SER LEU VAL THR SEQRES 9 A 345 ALA VAL GLY LYS PHE ALA PRO ASN ALA ARG ILE LEU VAL SEQRES 10 A 345 ILE SER ASN PRO VAL ASN SER LEU VAL PRO ILE ALA VAL SEQRES 11 A 345 GLU THR LEU LYS LYS MET GLY LYS PHE LYS PRO GLY ASN SEQRES 12 A 345 VAL MET GLY VAL THR ASN LEU ASP LEU VAL ARG ALA GLU SEQRES 13 A 345 THR PHE LEU VAL ASP TYR LEU MET LEU LYS ASN PRO LYS SEQRES 14 A 345 ILE GLY GLN GLU GLN ASP LYS THR THR MET HIS ARG LYS SEQRES 15 A 345 VAL THR VAL ILE GLY GLY HIS SER GLY GLU THR ILE ILE SEQRES 16 A 345 PRO ILE ILE THR ASP LYS SER LEU VAL PHE GLN LEU ASP SEQRES 17 A 345 LYS GLN TYR GLU HIS PHE ILE HIS ARG VAL GLN PHE GLY SEQRES 18 A 345 GLY ASP GLU ILE VAL LYS ALA LYS GLN GLY ALA GLY SER SEQRES 19 A 345 ALA THR LEU SER MET ALA PHE ALA GLY ALA LYS PHE ALA SEQRES 20 A 345 GLU GLU VAL LEU ARG SER PHE HIS ASN GLU LYS PRO GLU SEQRES 21 A 345 THR GLU SER LEU SER ALA PHE VAL TYR LEU PRO GLY LEU SEQRES 22 A 345 LYS ASN GLY LYS LYS ALA GLN GLN LEU VAL GLY ASP ASN SEQRES 23 A 345 SER ILE GLU TYR PHE SER LEU PRO ILE VAL LEU ARG ASN SEQRES 24 A 345 GLY SER VAL VAL SER ILE ASP THR SER VAL LEU GLU LYS SEQRES 25 A 345 LEU SER PRO ARG GLU GLU GLN LEU VAL ASN THR ALA VAL SEQRES 26 A 345 LYS GLU LEU ARG LYS ASN ILE GLU LYS GLY LYS SER PHE SEQRES 27 A 345 ILE LEU ASP SER SER LYS LEU SEQRES 1 B 345 GLY SER MET VAL LYS VAL ALA ILE LEU GLY ALA SER GLY SEQRES 2 B 345 GLY VAL GLY GLN PRO LEU SER LEU LEU LEU LYS LEU SER SEQRES 3 B 345 PRO TYR VAL SER GLU LEU ALA LEU TYR ASP ILE ARG ALA SEQRES 4 B 345 ALA GLU GLY ILE GLY LYS ASP LEU SER HIS ILE ASN THR SEQRES 5 B 345 ASN SER SER CYS VAL GLY TYR ASP LYS ASP SER ILE GLU SEQRES 6 B 345 ASN THR LEU SER ASN ALA GLN VAL VAL LEU ILE PRO ALA SEQRES 7 B 345 GLY VAL PRO ARG LYS PRO GLY LEU THR ARG ASP ASP LEU SEQRES 8 B 345 PHE LYS MET ASN ALA GLY ILE VAL LYS SER LEU VAL THR SEQRES 9 B 345 ALA VAL GLY LYS PHE ALA PRO ASN ALA ARG ILE LEU VAL SEQRES 10 B 345 ILE SER ASN PRO VAL ASN SER LEU VAL PRO ILE ALA VAL SEQRES 11 B 345 GLU THR LEU LYS LYS MET GLY LYS PHE LYS PRO GLY ASN SEQRES 12 B 345 VAL MET GLY VAL THR ASN LEU ASP LEU VAL ARG ALA GLU SEQRES 13 B 345 THR PHE LEU VAL ASP TYR LEU MET LEU LYS ASN PRO LYS SEQRES 14 B 345 ILE GLY GLN GLU GLN ASP LYS THR THR MET HIS ARG LYS SEQRES 15 B 345 VAL THR VAL ILE GLY GLY HIS SER GLY GLU THR ILE ILE SEQRES 16 B 345 PRO ILE ILE THR ASP LYS SER LEU VAL PHE GLN LEU ASP SEQRES 17 B 345 LYS GLN TYR GLU HIS PHE ILE HIS ARG VAL GLN PHE GLY SEQRES 18 B 345 GLY ASP GLU ILE VAL LYS ALA LYS GLN GLY ALA GLY SER SEQRES 19 B 345 ALA THR LEU SER MET ALA PHE ALA GLY ALA LYS PHE ALA SEQRES 20 B 345 GLU GLU VAL LEU ARG SER PHE HIS ASN GLU LYS PRO GLU SEQRES 21 B 345 THR GLU SER LEU SER ALA PHE VAL TYR LEU PRO GLY LEU SEQRES 22 B 345 LYS ASN GLY LYS LYS ALA GLN GLN LEU VAL GLY ASP ASN SEQRES 23 B 345 SER ILE GLU TYR PHE SER LEU PRO ILE VAL LEU ARG ASN SEQRES 24 B 345 GLY SER VAL VAL SER ILE ASP THR SER VAL LEU GLU LYS SEQRES 25 B 345 LEU SER PRO ARG GLU GLU GLN LEU VAL ASN THR ALA VAL SEQRES 26 B 345 LYS GLU LEU ARG LYS ASN ILE GLU LYS GLY LYS SER PHE SEQRES 27 B 345 ILE LEU ASP SER SER LYS LEU HET OAA A 401 9 HET NAD A 402 44 HET OAA B 401 9 HET NAD B 402 44 HETNAM OAA OXALOACETATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 OAA 2(C4 H3 O5 1-) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *157(H2 O) HELIX 1 AA1 VAL A 13 LEU A 23 1 11 HELIX 2 AA2 ALA A 37 HIS A 47 1 11 HELIX 3 AA3 SER A 61 SER A 67 1 7 HELIX 4 AA4 THR A 85 ALA A 108 1 24 HELIX 5 AA5 PRO A 119 GLY A 135 1 17 HELIX 6 AA6 LYS A 138 GLY A 140 5 3 HELIX 7 AA7 THR A 146 ASN A 165 1 20 HELIX 8 AA8 ASN A 165 GLN A 170 1 6 HELIX 9 AA9 GLU A 171 GLN A 172 5 2 HELIX 10 AB1 ASP A 173 ARG A 179 5 7 HELIX 11 AB2 LYS A 199 ASP A 206 1 8 HELIX 12 AB3 LYS A 207 PHE A 218 1 12 HELIX 13 AB4 PHE A 218 LYS A 227 1 10 HELIX 14 AB5 THR A 234 SER A 251 1 18 HELIX 15 AB6 PRO A 269 LEU A 271 5 3 HELIX 16 AB7 ASN A 273 GLY A 282 1 10 HELIX 17 AB8 THR A 305 GLU A 309 5 5 HELIX 18 AB9 SER A 312 ASP A 339 1 28 HELIX 19 AC1 VAL B 13 LEU B 23 1 11 HELIX 20 AC2 ALA B 37 HIS B 47 1 11 HELIX 21 AC3 SER B 61 SER B 67 1 7 HELIX 22 AC4 THR B 85 ALA B 108 1 24 HELIX 23 AC5 PRO B 119 MET B 134 1 16 HELIX 24 AC6 LYS B 138 GLY B 140 5 3 HELIX 25 AC7 THR B 146 ASN B 165 1 20 HELIX 26 AC8 ASN B 165 GLU B 171 1 7 HELIX 27 AC9 ASP B 173 ARG B 179 5 7 HELIX 28 AD1 ASP B 198 ASP B 206 1 9 HELIX 29 AD2 LYS B 207 LYS B 227 1 21 HELIX 30 AD3 THR B 234 SER B 251 1 18 HELIX 31 AD4 PHE B 252 ASN B 254 5 3 HELIX 32 AD5 PRO B 269 LEU B 271 5 3 HELIX 33 AD6 ASN B 273 VAL B 281 1 9 HELIX 34 AD7 THR B 305 LYS B 310 5 6 HELIX 35 AD8 SER B 312 ILE B 337 1 26 SHEET 1 AA1 6 SER A 53 TYR A 57 0 SHEET 2 AA1 6 VAL A 27 TYR A 33 1 N LEU A 30 O SER A 53 SHEET 3 AA1 6 VAL A 2 LEU A 7 1 N VAL A 4 O GLU A 29 SHEET 4 AA1 6 VAL A 71 ILE A 74 1 O LEU A 73 N LEU A 7 SHEET 5 AA1 6 ARG A 112 VAL A 115 1 O LEU A 114 N VAL A 72 SHEET 6 AA1 6 VAL A 142 GLY A 144 1 O MET A 143 N VAL A 115 SHEET 1 AA2 2 VAL A 181 GLY A 185 0 SHEET 2 AA2 2 ILE A 192 ILE A 196 -1 O ILE A 195 N THR A 182 SHEET 1 AA3 3 SER A 263 TYR A 267 0 SHEET 2 AA3 3 TYR A 288 ARG A 296 -1 O PHE A 289 N VAL A 266 SHEET 3 AA3 3 SER A 299 ILE A 303 -1 O VAL A 301 N VAL A 294 SHEET 1 AA4 6 SER B 53 TYR B 57 0 SHEET 2 AA4 6 VAL B 27 TYR B 33 1 N LEU B 32 O TYR B 57 SHEET 3 AA4 6 VAL B 2 LEU B 7 1 N VAL B 4 O ALA B 31 SHEET 4 AA4 6 VAL B 71 ILE B 74 1 O LEU B 73 N LEU B 7 SHEET 5 AA4 6 ARG B 112 VAL B 115 1 O LEU B 114 N VAL B 72 SHEET 6 AA4 6 VAL B 142 GLY B 144 1 O MET B 143 N ILE B 113 SHEET 1 AA5 2 VAL B 181 GLY B 185 0 SHEET 2 AA5 2 ILE B 192 ILE B 196 -1 O ILE B 195 N THR B 182 SHEET 1 AA6 3 SER B 263 TYR B 267 0 SHEET 2 AA6 3 TYR B 288 ARG B 296 -1 O PHE B 289 N VAL B 266 SHEET 3 AA6 3 SER B 299 ILE B 303 -1 O SER B 302 N VAL B 294 CISPEP 1 ASN A 118 PRO A 119 0 6.20 CISPEP 2 ASN B 118 PRO B 119 0 8.98 SITE 1 AC1 9 ARG A 80 ASN A 118 ARG A 152 HIS A 187 SITE 2 AC1 9 GLY A 220 ALA A 233 NAD A 402 HOH A 511 SITE 3 AC1 9 HOH A 529 SITE 1 AC2 31 GLY A 8 SER A 10 GLY A 11 GLY A 12 SITE 2 AC2 31 VAL A 13 TYR A 33 ASP A 34 ILE A 35 SITE 3 AC2 31 PRO A 75 ALA A 76 GLY A 77 VAL A 78 SITE 4 AC2 31 PRO A 79 ASN A 93 ILE A 96 LEU A 100 SITE 5 AC2 31 ILE A 116 ASN A 118 VAL A 145 HIS A 187 SITE 6 AC2 31 ALA A 233 MET A 237 OAA A 401 HOH A 508 SITE 7 AC2 31 HOH A 509 HOH A 511 HOH A 516 HOH A 524 SITE 8 AC2 31 HOH A 535 HOH A 539 HOH A 549 SITE 1 AC3 10 ARG B 80 ASN B 118 ARG B 152 HIS B 187 SITE 2 AC3 10 GLY B 220 ALA B 233 NAD B 402 HOH B 536 SITE 3 AC3 10 HOH B 539 HOH B 554 SITE 1 AC4 34 GLY B 8 SER B 10 GLY B 11 GLY B 12 SITE 2 AC4 34 VAL B 13 TYR B 33 ASP B 34 ILE B 35 SITE 3 AC4 34 PRO B 75 ALA B 76 GLY B 77 VAL B 78 SITE 4 AC4 34 PRO B 79 ASN B 93 LEU B 100 ILE B 116 SITE 5 AC4 34 ASN B 118 VAL B 145 HIS B 187 ALA B 233 SITE 6 AC4 34 THR B 234 MET B 237 OAA B 401 HOH B 509 SITE 7 AC4 34 HOH B 513 HOH B 514 HOH B 520 HOH B 522 SITE 8 AC4 34 HOH B 523 HOH B 534 HOH B 536 HOH B 546 SITE 9 AC4 34 HOH B 559 HOH B 575 CRYST1 57.218 86.658 135.050 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007405 0.00000